HEADER TRANSFERASE 06-JUN-17 5W2O TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS KASA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-KETOACYL-ACP SYNTHASE 1,KAS 1; COMPND 5 EC: 2.3.1.41; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 35801 / SOURCE 3 TMC 107 / ERDMAN); SOURCE 4 ORGANISM_TAXID: 652616; SOURCE 5 STRAIN: ATCC 35801 / TMC 107 / ERDMAN; SOURCE 6 GENE: KASA, ERDMAN_2470; SOURCE 7 EXPRESSION_SYSTEM: MYCOBACTERIUM SMEGMATIS STR. MC2 155; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 246196 KEYWDS BETA KETOACYL SYNTHASE I, LIPID SYNTHESIS, FATTY ACID BIOSYNTHESIS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.C.CAPODAGLI,M.B.NEIDITCH REVDAT 4 04-OCT-23 5W2O 1 REMARK REVDAT 3 11-DEC-19 5W2O 1 REMARK REVDAT 2 09-JAN-19 5W2O 1 JRNL REVDAT 1 05-DEC-18 5W2O 0 JRNL AUTH P.KUMAR,G.C.CAPODAGLI,D.AWASTHI,R.SHRESTHA,K.MAHARAJA, JRNL AUTH 2 P.SUKHEJA,S.G.LI,D.INOYAMA,M.ZIMMERMAN,H.P.HO LIANG, JRNL AUTH 3 J.SARATHY,M.MINA,G.RASIC,R.RUSSO,A.L.PERRYMAN,T.RICHMANN, JRNL AUTH 4 A.GUPTA,E.SINGLETON,S.VERMA,S.HUSAIN,P.SOTEROPOULOS,Z.WANG, JRNL AUTH 5 R.MORRIS,G.PORTER,G.AGNIHOTRI,P.SALGAME,S.EKINS,K.Y.RHEE, JRNL AUTH 6 N.CONNELL,V.DARTOIS,M.B.NEIDITCH,J.S.FREUNDLICH,D.ALLAND JRNL TITL SYNERGISTIC LETHALITY OF A BINARY INHIBITOR OF MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS KASA. JRNL REF MBIO V. 9 2018 JRNL REFN ESSN 2150-7511 JRNL PMID 30563908 JRNL DOI 10.1128/MBIO.02101-17 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.170 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5666 - 4.3359 0.99 3478 150 0.1488 0.1608 REMARK 3 2 4.3359 - 3.4422 1.00 3353 146 0.1350 0.1656 REMARK 3 3 3.4422 - 3.0072 1.00 3323 141 0.1476 0.1794 REMARK 3 4 3.0072 - 2.7324 1.00 3295 146 0.1526 0.1640 REMARK 3 5 2.7324 - 2.5366 1.00 3300 143 0.1548 0.1756 REMARK 3 6 2.5366 - 2.3870 1.00 3272 142 0.1594 0.1974 REMARK 3 7 2.3870 - 2.2675 1.00 3244 142 0.1568 0.1929 REMARK 3 8 2.2675 - 2.1688 1.00 3264 144 0.1637 0.1986 REMARK 3 9 2.1688 - 2.0853 1.00 3257 141 0.1512 0.1806 REMARK 3 10 2.0853 - 2.0134 1.00 3243 142 0.1560 0.1614 REMARK 3 11 2.0134 - 1.9504 1.00 3234 141 0.1619 0.1813 REMARK 3 12 1.9504 - 1.8946 1.00 3243 142 0.1978 0.2633 REMARK 3 13 1.8946 - 1.8448 1.00 3218 139 0.1925 0.1971 REMARK 3 14 1.8448 - 1.7998 1.00 3253 141 0.2027 0.2304 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3171 REMARK 3 ANGLE : 0.868 4309 REMARK 3 CHIRALITY : 0.055 481 REMARK 3 PLANARITY : 0.005 574 REMARK 3 DIHEDRAL : 13.404 1899 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0338 -16.5536 -14.2870 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.1334 REMARK 3 T33: 0.1566 T12: -0.0126 REMARK 3 T13: -0.0149 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.1733 L22: 0.6143 REMARK 3 L33: 0.4625 L12: 0.0073 REMARK 3 L13: -0.2958 L23: 0.0222 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: 0.0378 S13: -0.0691 REMARK 3 S21: -0.0085 S22: -0.0544 S23: -0.0885 REMARK 3 S31: 0.1923 S32: 0.1127 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.0607 -11.2113 -30.1547 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.1342 REMARK 3 T33: 0.1943 T12: 0.0311 REMARK 3 T13: -0.0136 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.2235 L22: 0.3375 REMARK 3 L33: 0.3161 L12: -0.1230 REMARK 3 L13: 0.0455 L23: -0.1801 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.0161 S13: 0.1161 REMARK 3 S21: -0.0733 S22: -0.1000 S23: -0.0694 REMARK 3 S31: 0.1634 S32: 0.0305 S33: -0.0139 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 159 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5043 -5.9212 -10.8611 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.0976 REMARK 3 T33: 0.1256 T12: -0.0486 REMARK 3 T13: 0.0111 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.2305 L22: 0.6092 REMARK 3 L33: 0.4516 L12: 0.0230 REMARK 3 L13: -0.0509 L23: -0.1035 REMARK 3 S TENSOR REMARK 3 S11: 0.0850 S12: -0.0279 S13: -0.0152 REMARK 3 S21: 0.0976 S22: -0.0347 S23: 0.0550 REMARK 3 S31: -0.0550 S32: -0.0066 S33: 0.0382 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6107 -11.4274 -2.9080 REMARK 3 T TENSOR REMARK 3 T11: 0.2263 T22: 0.1197 REMARK 3 T33: 0.1459 T12: -0.0751 REMARK 3 T13: 0.0178 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.2168 L22: 0.2388 REMARK 3 L33: 0.2032 L12: -0.0463 REMARK 3 L13: 0.1331 L23: -0.2274 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: -0.0414 S13: 0.0407 REMARK 3 S21: 0.1426 S22: -0.0335 S23: 0.0665 REMARK 3 S31: 0.0096 S32: -0.0208 S33: 0.0117 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1808 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48010 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM NACL, 14% ISOPROPANOL, 2MM REMARK 280 TRIS(2-CARBOXYETHYL)PHOSPHINE HYDROCHLORIDE (TCEP HCL), PH 9.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.00267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.00533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 98.00533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.00267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -49.00267 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 737 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O13 TCE A 509 O HOH A 601 2.02 REMARK 500 OD1 ASP A 76 O HOH A 602 2.08 REMARK 500 OD1 ASP A 28 O HOH A 603 2.10 REMARK 500 NH1 ARG A 327 O HOH A 604 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 136 CD LYS A 136 CE -0.202 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 128 CA - CB - CG ANGL. DEV. = 20.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 128 -46.59 86.24 REMARK 500 PRO A 139 -7.48 -59.68 REMARK 500 SER A 169 44.64 -150.53 REMARK 500 ALA A 170 -129.15 54.04 REMARK 500 PHE A 230 -2.03 72.20 REMARK 500 ASP A 235 32.86 -143.57 REMARK 500 VAL A 278 -34.87 -135.30 REMARK 500 VAL A 278 -37.70 -133.81 REMARK 500 ILE A 347 -106.00 44.11 REMARK 500 ILE A 347 -106.17 44.41 REMARK 500 ASP A 381 73.68 -104.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 309 O REMARK 620 2 ASN A 309 OD1 78.3 REMARK 620 3 ALA A 310 O 78.0 85.5 REMARK 620 4 GLU A 354 OE1 166.8 98.4 89.0 REMARK 620 5 ASN A 399 OD1 81.7 85.6 159.1 111.0 REMARK 620 6 ASN A 400 O 89.3 165.8 98.9 95.2 85.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TCE A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 510 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4C72 RELATED DB: PDB REMARK 900 4C72 CONTAINS THE SAME PROTEIN COMPLEXED WITH TLG. REMARK 900 RELATED ID: 4C6W RELATED DB: PDB REMARK 900 4C6W CONTAINS THE SAME PROTEIN WITH A C171Q MUTATION. REMARK 900 RELATED ID: 4C70 RELATED DB: PDB REMARK 900 4C70 CONTAINS THE SAME PROTEIN WITH A C171Q MUTATION AND COMPLEXED REMARK 900 WITH TLM. REMARK 900 RELATED ID: 4C71 RELATED DB: PDB REMARK 900 4C71 CONTAINS THE SAME PROTEIN WITH A C171Q MUTATION AND COMPLEXED REMARK 900 WITH TLM18. REMARK 900 RELATED ID: 4C73 RELATED DB: PDB REMARK 900 4C73 CONTAINS THE SAME PROTEIN WITH A C171Q MUTATION AND COMPLEXED REMARK 900 WITH TLM6. REMARK 900 RELATED ID: 4C6Z RELATED DB: PDB REMARK 900 4C6Z CONTAINS THE SAME PROTEIN WITH A C171Q MUTATION AND COMPLEXED REMARK 900 WITH TLM3. REMARK 900 RELATED ID: 2WGE RELATED DB: PDB REMARK 900 2WGE CONTAINS THE SAME PROTEIN COMPLEXED WITH TLM. REMARK 900 RELATED ID: 4C6X RELATED DB: PDB REMARK 900 4C6X CONTAINS THE SAME PROTEIN WITH A C171Q MUTATION AND COMPLEXED REMARK 900 WITH TLM. REMARK 900 RELATED ID: 2WGG RELATED DB: PDB REMARK 900 2WGG CONTAINS THE SAME PROTEIN WITH A C171Q MUTATION AND COMPLEXED REMARK 900 WITH TLM. REMARK 900 RELATED ID: 2WGD RELATED DB: PDB REMARK 900 2WGD CONTAINS THE SAME PROTEIN. REMARK 900 RELATED ID: 5LD8 RELATED DB: PDB REMARK 900 5LD8 CONTAINS THE SAME PROTEIN WITH A COMPLEXED WITH 6U5. REMARK 900 RELATED ID: 2WGF RELATED DB: PDB REMARK 900 2WGF CONTAINS THE SAME PROTEIN WITH A C171Q MUTATION. REMARK 900 RELATED ID: 4C6U RELATED DB: PDB REMARK 900 4C6U CONTAINS THE SAME PROTEIN COMPLEXED WITH TLM5. REMARK 900 RELATED ID: 4C6V RELATED DB: PDB REMARK 900 4C6V CONTAINS THE SAME PROTEIN COMPLEXED WITH TLM5. DBREF 5W2O A 1 416 UNP H8ESN0 FAB1_MYCTE 1 416 SEQADV 5W2O MET A -22 UNP H8ESN0 INITIATING METHIONINE SEQADV 5W2O GLY A -21 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O SER A -20 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O SER A -19 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O HIS A -18 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O HIS A -17 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O HIS A -16 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O HIS A -15 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O HIS A -14 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O HIS A -13 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O SER A -12 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O SER A -11 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O GLY A -10 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O LEU A -9 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O VAL A -8 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O PRO A -7 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O ARG A -6 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O GLY A -5 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O SER A -4 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O HIS A -3 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O MET A -2 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O ALA A -1 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O SER A 0 UNP H8ESN0 EXPRESSION TAG SEQADV 5W2O VAL A 1 UNP H8ESN0 MET 1 ENGINEERED MUTATION SEQRES 1 A 439 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 439 LEU VAL PRO ARG GLY SER HIS MET ALA SER VAL SER GLN SEQRES 3 A 439 PRO SER THR ALA ASN GLY GLY PHE PRO SER VAL VAL VAL SEQRES 4 A 439 THR ALA VAL THR ALA THR THR SER ILE SER PRO ASP ILE SEQRES 5 A 439 GLU SER THR TRP LYS GLY LEU LEU ALA GLY GLU SER GLY SEQRES 6 A 439 ILE HIS ALA LEU GLU ASP GLU PHE VAL THR LYS TRP ASP SEQRES 7 A 439 LEU ALA VAL LYS ILE GLY GLY HIS LEU LYS ASP PRO VAL SEQRES 8 A 439 ASP SER HIS MET GLY ARG LEU ASP MET ARG ARG MET SER SEQRES 9 A 439 TYR VAL GLN ARG MET GLY LYS LEU LEU GLY GLY GLN LEU SEQRES 10 A 439 TRP GLU SER ALA GLY SER PRO GLU VAL ASP PRO ASP ARG SEQRES 11 A 439 PHE ALA VAL VAL VAL GLY THR GLY LEU GLY GLY ALA GLU SEQRES 12 A 439 ARG ILE VAL GLU SER TYR ASP LEU MET ASN ALA GLY GLY SEQRES 13 A 439 PRO ARG LYS VAL SER PRO LEU ALA VAL GLN MET ILE MET SEQRES 14 A 439 PRO ASN GLY ALA ALA ALA VAL ILE GLY LEU GLN LEU GLY SEQRES 15 A 439 ALA ARG ALA GLY VAL MET THR PRO VAL SER ALA CYS SER SEQRES 16 A 439 SER GLY SER GLU ALA ILE ALA HIS ALA TRP ARG GLN ILE SEQRES 17 A 439 VAL MET GLY ASP ALA ASP VAL ALA VAL CYS GLY GLY VAL SEQRES 18 A 439 GLU GLY PRO ILE GLU ALA LEU PRO ILE ALA ALA PHE SER SEQRES 19 A 439 MET MET ARG ALA MET SER THR ARG ASN ASP GLU PRO GLU SEQRES 20 A 439 ARG ALA SER ARG PRO PHE ASP LYS ASP ARG ASP GLY PHE SEQRES 21 A 439 VAL PHE GLY GLU ALA GLY ALA LEU MET LEU ILE GLU THR SEQRES 22 A 439 GLU GLU HIS ALA LYS ALA ARG GLY ALA LYS PRO LEU ALA SEQRES 23 A 439 ARG LEU LEU GLY ALA GLY ILE THR SER ASP ALA PHE HIS SEQRES 24 A 439 MET VAL ALA PRO ALA ALA ASP GLY VAL ARG ALA GLY ARG SEQRES 25 A 439 ALA MET THR ARG SER LEU GLU LEU ALA GLY LEU SER PRO SEQRES 26 A 439 ALA ASP ILE ASP HIS VAL ASN ALA HIS GLY THR ALA THR SEQRES 27 A 439 PRO ILE GLY ASP ALA ALA GLU ALA ASN ALA ILE ARG VAL SEQRES 28 A 439 ALA GLY CYS ASP GLN ALA ALA VAL TYR ALA PRO LYS SER SEQRES 29 A 439 ALA LEU GLY HIS SER ILE GLY ALA VAL GLY ALA LEU GLU SEQRES 30 A 439 SER VAL LEU THR VAL LEU THR LEU ARG ASP GLY VAL ILE SEQRES 31 A 439 PRO PRO THR LEU ASN TYR GLU THR PRO ASP PRO GLU ILE SEQRES 32 A 439 ASP LEU ASP VAL VAL ALA GLY GLU PRO ARG TYR GLY ASP SEQRES 33 A 439 TYR ARG TYR ALA VAL ASN ASN SER PHE GLY PHE GLY GLY SEQRES 34 A 439 HIS ASN VAL ALA LEU ALA PHE GLY ARG TYR HET NA A 501 1 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET IPA A 506 4 HET IPA A 507 4 HET IPA A 508 4 HET TCE A 509 16 HET CL A 510 1 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETNAM TCE 3,3',3''-PHOSPHANETRIYLTRIPROPANOIC ACID HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL HETSYN TCE 3-[BIS(2-CARBOXYETHYL)PHOSPHANYL]PROPANOIC ACID FORMUL 2 NA NA 1+ FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 IPA 3(C3 H8 O) FORMUL 10 TCE C9 H15 O6 P FORMUL 11 CL CL 1- FORMUL 12 HOH *272(H2 O) HELIX 1 AA1 ASP A 28 ALA A 38 1 11 HELIX 2 AA2 ASP A 48 ASP A 55 1 8 HELIX 3 AA3 PRO A 67 MET A 72 5 6 HELIX 4 AA4 GLY A 73 MET A 80 1 8 HELIX 5 AA5 SER A 81 ALA A 98 1 18 HELIX 6 AA6 ASP A 104 ASP A 106 5 3 HELIX 7 AA7 GLY A 118 GLY A 133 1 16 HELIX 8 AA8 PRO A 134 VAL A 137 5 4 HELIX 9 AA9 LEU A 140 MET A 146 1 7 HELIX 10 AB1 ASN A 148 GLY A 159 1 12 HELIX 11 AB2 SER A 169 CYS A 171 5 3 HELIX 12 AB3 SER A 172 MET A 187 1 16 HELIX 13 AB4 GLU A 203 MET A 212 1 10 HELIX 14 AB5 GLU A 222 ALA A 226 5 5 HELIX 15 AB6 GLU A 251 ARG A 257 1 7 HELIX 16 AB7 GLY A 284 GLY A 299 1 16 HELIX 17 AB8 SER A 301 ILE A 305 5 5 HELIX 18 AB9 THR A 315 ALA A 329 1 15 HELIX 19 AC1 PRO A 339 GLY A 344 1 6 HELIX 20 AC2 SER A 346 GLY A 348 5 3 HELIX 21 AC3 ALA A 349 GLY A 365 1 17 SHEET 1 AA111 VAL A 164 MET A 165 0 SHEET 2 AA111 PHE A 108 THR A 114 1 N VAL A 110 O MET A 165 SHEET 3 AA111 VAL A 192 VAL A 198 1 O GLY A 196 N GLY A 113 SHEET 4 AA111 ALA A 242 THR A 250 -1 O ILE A 248 N ALA A 193 SHEET 5 AA111 VAL A 14 THR A 23 -1 N VAL A 15 O GLU A 249 SHEET 6 AA111 ALA A 263 SER A 272 -1 O ALA A 263 N VAL A 16 SHEET 7 AA111 HIS A 407 GLY A 414 -1 O GLY A 414 N ARG A 264 SHEET 8 AA111 TYR A 396 GLY A 403 -1 N ALA A 397 O PHE A 413 SHEET 9 AA111 HIS A 307 ASN A 309 1 N ASN A 309 O ASN A 400 SHEET 10 AA111 ALA A 335 TYR A 337 1 O ALA A 335 N VAL A 308 SHEET 11 AA111 ASP A 383 VAL A 384 1 O ASP A 383 N VAL A 336 SHEET 1 AA2 2 HIS A 44 ALA A 45 0 SHEET 2 AA2 2 ILE A 60 GLY A 61 -1 O GLY A 61 N HIS A 44 SHEET 1 AA3 2 VAL A 366 ILE A 367 0 SHEET 2 AA3 2 ARG A 390 TYR A 391 -1 O ARG A 390 N ILE A 367 LINK O ASN A 309 NA NA A 501 1555 1555 2.65 LINK OD1 ASN A 309 NA NA A 501 1555 1555 2.43 LINK O ALA A 310 NA NA A 501 1555 1555 2.60 LINK OE1 GLU A 354 NA NA A 501 1555 1555 2.32 LINK OD1 ASN A 399 NA NA A 501 1555 1555 2.35 LINK O ASN A 400 NA NA A 501 1555 1555 2.82 SITE 1 AC1 5 ASN A 309 ALA A 310 GLU A 354 ASN A 399 SITE 2 AC1 5 ASN A 400 SITE 1 AC2 7 ALA A 18 VAL A 19 GLU A 30 ARG A 363 SITE 2 AC2 7 HOH A 607 HOH A 622 HOH A 636 SITE 1 AC3 4 LEU A 37 ASP A 364 TYR A 391 HOH A 663 SITE 1 AC4 9 GLU A 199 GLY A 200 PRO A 201 ILE A 202 SITE 2 AC4 9 PRO A 206 PHE A 239 GLY A 240 HIS A 345 SITE 3 AC4 9 ILE A 347 SITE 1 AC5 6 PHE A 275 ALA A 282 ASP A 283 HOH A 632 SITE 2 AC5 6 HOH A 811 HOH A 819 SITE 1 AC6 3 MET A 213 ILE A 317 HOH A 754 SITE 1 AC7 4 ASN A 324 ARG A 327 VAL A 328 HOH A 637 SITE 1 AC8 4 ASN A 148 GLY A 149 MET A 277 PHE A 404 SITE 1 AC9 12 TRP A 95 PRO A 101 GLU A 102 VAL A 103 SITE 2 AC9 12 LEU A 156 GLN A 157 LEU A 158 HOH A 601 SITE 3 AC9 12 HOH A 642 HOH A 709 HOH A 719 HOH A 738 SITE 1 AD1 3 ARG A 79 ALA A 386 ARG A 390 CRYST1 77.389 77.389 147.008 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012922 0.007460 0.000000 0.00000 SCALE2 0.000000 0.014921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006802 0.00000