HEADER TRANSFERASE/DNA 07-JUN-17 5W35 TITLE CRYSTAL STRUCTURE OF THE RNA POLYMERASE DOMAIN (RPD) OF MYCOBACTERIUM TITLE 2 TUBERCULOSIS PRIMASE DNAG IN COMPLEX WITH A DOUBLE-STRANDED DNA TITLE 3 OLIGOMER WITH A 1-NUCLEOTIDE OVERHANG COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SYNTHETIC DNA OLIGOMER 5'-CCACTTCCGGTC; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: SYNTHETIC DNA OLIGOMER 5'-TGACCGGAAGTGG; COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: DNAG, RV2343C, MTCY98.12C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS DNA REPLICATION, REPLISOME, TOPRIM FOLD, DNA BINDING, TRANSFERASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.HOU,O.V.TSODIKOV REVDAT 3 04-OCT-23 5W35 1 REMARK REVDAT 2 18-APR-18 5W35 1 JRNL REMARK REVDAT 1 28-MAR-18 5W35 0 JRNL AUTH C.HOU,T.BISWAS,O.V.TSODIKOV JRNL TITL STRUCTURES OF THE CATALYTIC DOMAIN OF BACTERIAL PRIMASE DNAG JRNL TITL 2 IN COMPLEXES WITH DNA PROVIDE INSIGHT INTO KEY PRIMING JRNL TITL 3 EVENTS. JRNL REF BIOCHEMISTRY V. 57 2084 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 29558114 JRNL DOI 10.1021/ACS.BIOCHEM.8B00036 REMARK 2 REMARK 2 RESOLUTION. 3.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 11550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 620 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 831 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4932 REMARK 3 NUCLEIC ACID ATOMS : 78 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.63000 REMARK 3 B22 (A**2) : -9.38000 REMARK 3 B33 (A**2) : 4.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.43000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.619 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.579 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.379 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5114 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4761 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6901 ; 1.111 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10933 ; 0.913 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 641 ; 5.855 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 239 ;34.184 ;22.134 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 824 ;15.911 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;14.783 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 731 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5772 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1171 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2570 ; 4.421 ;12.787 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2569 ; 4.422 ;12.786 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3209 ; 7.375 ;19.169 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3210 ; 7.374 ;19.171 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2544 ; 3.858 ;13.418 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2541 ; 3.855 ;13.413 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3690 ; 6.698 ;19.923 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5466 ;10.271 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5467 ;10.270 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5W35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12200 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5W34 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 6% PEG 4000, 5 MM REMARK 280 SRCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 105.20700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 108 REMARK 465 ASP A 430 REMARK 465 VAL A 431 REMARK 465 ALA A 432 REMARK 465 GLY B 108 REMARK 465 PRO B 109 REMARK 465 ALA B 432 REMARK 465 DC C 13 REMARK 465 DC C 14 REMARK 465 DA C 15 REMARK 465 DC C 16 REMARK 465 DT C 17 REMARK 465 DT C 18 REMARK 465 DG C 22 REMARK 465 DT C 23 REMARK 465 DC C 24 REMARK 465 DT D 0 REMARK 465 DG D 1 REMARK 465 DA D 2 REMARK 465 DA D 8 REMARK 465 DG D 9 REMARK 465 DT D 10 REMARK 465 DG D 11 REMARK 465 DG D 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC C 19 P OP1 OP2 O5' N1 C2 O2 REMARK 470 DC C 19 N3 C4 N4 C5 C6 REMARK 470 DC C 20 N1 C2 O2 N3 C4 N4 C5 REMARK 470 DC C 20 C6 REMARK 470 DG C 21 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DG C 21 N9 C8 N7 C5 C6 O6 N1 REMARK 470 DG C 21 C2 N2 N3 C4 REMARK 470 DC D 3 N1 C2 O2 N3 C4 N4 C5 REMARK 470 DC D 3 C6 REMARK 470 DG D 5 N9 C8 N7 C5 C6 O6 N1 REMARK 470 DG D 5 C2 N2 N3 C4 REMARK 470 DG D 6 N9 C8 N7 C5 C6 O6 N1 REMARK 470 DG D 6 C2 N2 N3 C4 REMARK 470 DA D 7 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA D 7 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA D 7 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 190 OP2 DC D 3 2656 1.60 REMARK 500 NH2 ARG B 190 OP2 DC D 3 2656 1.78 REMARK 500 CZ ARG B 190 OP2 DC D 3 2656 1.88 REMARK 500 N ARG B 193 O2 DC D 4 2656 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 147 44.76 -107.70 REMARK 500 ASP A 226 34.82 -98.22 REMARK 500 LYS A 255 -53.36 -29.36 REMARK 500 SER A 308 -147.64 -155.71 REMARK 500 ASP A 321 -34.76 -149.76 REMARK 500 ASP B 167 45.02 -146.92 REMARK 500 HIS B 194 40.34 -103.23 REMARK 500 ASP B 307 -145.63 66.25 REMARK 500 SER B 308 49.25 -103.79 REMARK 500 ARG B 371 42.92 -93.32 REMARK 500 GLU B 386 35.50 -90.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W33 RELATED DB: PDB REMARK 900 RELATED ID: 5W34 RELATED DB: PDB REMARK 900 RELATED ID: 5W36 RELATED DB: PDB DBREF 5W35 A 112 432 UNP P9WNW1 DNAG_MYCTU 112 432 DBREF 5W35 B 112 432 UNP P9WNW1 DNAG_MYCTU 112 432 DBREF 5W35 C 13 24 PDB 5W35 5W35 13 24 DBREF 5W35 D 0 12 PDB 5W35 5W35 0 12 SEQADV 5W35 GLY A 108 UNP P9WNW1 EXPRESSION TAG SEQADV 5W35 PRO A 109 UNP P9WNW1 EXPRESSION TAG SEQADV 5W35 HIS A 110 UNP P9WNW1 EXPRESSION TAG SEQADV 5W35 MET A 111 UNP P9WNW1 EXPRESSION TAG SEQADV 5W35 GLY B 108 UNP P9WNW1 EXPRESSION TAG SEQADV 5W35 PRO B 109 UNP P9WNW1 EXPRESSION TAG SEQADV 5W35 HIS B 110 UNP P9WNW1 EXPRESSION TAG SEQADV 5W35 MET B 111 UNP P9WNW1 EXPRESSION TAG SEQRES 1 A 325 GLY PRO HIS MET GLY SER ARG SER ARG LEU LEU ALA ALA SEQRES 2 A 325 ASN ALA ALA ALA ALA ALA PHE TYR ALA GLN ALA LEU GLN SEQRES 3 A 325 SER ASP GLU ALA ALA PRO ALA ARG GLN TYR LEU THR GLU SEQRES 4 A 325 ARG SER PHE ASP ALA ALA ALA ALA ARG LYS PHE GLY CYS SEQRES 5 A 325 GLY PHE ALA PRO SER GLY TRP ASP SER LEU THR LYS HIS SEQRES 6 A 325 LEU GLN ARG LYS GLY PHE GLU PHE GLU GLU LEU GLU ALA SEQRES 7 A 325 ALA GLY LEU SER ARG GLN GLY ARG HIS GLY PRO MET ASP SEQRES 8 A 325 ARG PHE HIS ARG ARG LEU LEU TRP PRO ILE ARG THR SER SEQRES 9 A 325 ALA GLY GLU VAL VAL GLY PHE GLY ALA ARG ARG LEU PHE SEQRES 10 A 325 ASP ASP ASP ALA MET GLU ALA LYS TYR VAL ASN THR PRO SEQRES 11 A 325 GLU THR LEU LEU TYR LYS LYS SER SER VAL MET PHE GLY SEQRES 12 A 325 ILE ASP LEU ALA LYS ARG ASP ILE ALA LYS GLY HIS GLN SEQRES 13 A 325 ALA VAL VAL VAL GLU GLY TYR THR ASP VAL MET ALA MET SEQRES 14 A 325 HIS LEU ALA GLY VAL THR THR ALA VAL ALA SER CYS GLY SEQRES 15 A 325 THR ALA PHE GLY GLY GLU HIS LEU ALA MET LEU ARG ARG SEQRES 16 A 325 LEU MET MET ASP ASP SER PHE PHE ARG GLY GLU LEU ILE SEQRES 17 A 325 TYR VAL PHE ASP GLY ASP GLU ALA GLY ARG ALA ALA ALA SEQRES 18 A 325 LEU LYS ALA PHE ASP GLY GLU GLN LYS LEU ALA GLY GLN SEQRES 19 A 325 SER PHE VAL ALA VAL ALA PRO ASP GLY MET ASP PRO CYS SEQRES 20 A 325 ASP LEU ARG LEU LYS CYS GLY ASP ALA ALA LEU ARG ASP SEQRES 21 A 325 LEU VAL ALA ARG ARG THR PRO LEU PHE GLU PHE ALA ILE SEQRES 22 A 325 ARG ALA ALA ILE ALA GLU MET ASP LEU ASP SER ALA GLU SEQRES 23 A 325 GLY ARG VAL ALA ALA LEU ARG ARG CYS VAL PRO MET VAL SEQRES 24 A 325 GLY GLN ILE LYS ASP PRO THR LEU ARG ASP GLU TYR ALA SEQRES 25 A 325 ARG GLN LEU ALA GLY TRP VAL GLY TRP ALA ASP VAL ALA SEQRES 1 B 325 GLY PRO HIS MET GLY SER ARG SER ARG LEU LEU ALA ALA SEQRES 2 B 325 ASN ALA ALA ALA ALA ALA PHE TYR ALA GLN ALA LEU GLN SEQRES 3 B 325 SER ASP GLU ALA ALA PRO ALA ARG GLN TYR LEU THR GLU SEQRES 4 B 325 ARG SER PHE ASP ALA ALA ALA ALA ARG LYS PHE GLY CYS SEQRES 5 B 325 GLY PHE ALA PRO SER GLY TRP ASP SER LEU THR LYS HIS SEQRES 6 B 325 LEU GLN ARG LYS GLY PHE GLU PHE GLU GLU LEU GLU ALA SEQRES 7 B 325 ALA GLY LEU SER ARG GLN GLY ARG HIS GLY PRO MET ASP SEQRES 8 B 325 ARG PHE HIS ARG ARG LEU LEU TRP PRO ILE ARG THR SER SEQRES 9 B 325 ALA GLY GLU VAL VAL GLY PHE GLY ALA ARG ARG LEU PHE SEQRES 10 B 325 ASP ASP ASP ALA MET GLU ALA LYS TYR VAL ASN THR PRO SEQRES 11 B 325 GLU THR LEU LEU TYR LYS LYS SER SER VAL MET PHE GLY SEQRES 12 B 325 ILE ASP LEU ALA LYS ARG ASP ILE ALA LYS GLY HIS GLN SEQRES 13 B 325 ALA VAL VAL VAL GLU GLY TYR THR ASP VAL MET ALA MET SEQRES 14 B 325 HIS LEU ALA GLY VAL THR THR ALA VAL ALA SER CYS GLY SEQRES 15 B 325 THR ALA PHE GLY GLY GLU HIS LEU ALA MET LEU ARG ARG SEQRES 16 B 325 LEU MET MET ASP ASP SER PHE PHE ARG GLY GLU LEU ILE SEQRES 17 B 325 TYR VAL PHE ASP GLY ASP GLU ALA GLY ARG ALA ALA ALA SEQRES 18 B 325 LEU LYS ALA PHE ASP GLY GLU GLN LYS LEU ALA GLY GLN SEQRES 19 B 325 SER PHE VAL ALA VAL ALA PRO ASP GLY MET ASP PRO CYS SEQRES 20 B 325 ASP LEU ARG LEU LYS CYS GLY ASP ALA ALA LEU ARG ASP SEQRES 21 B 325 LEU VAL ALA ARG ARG THR PRO LEU PHE GLU PHE ALA ILE SEQRES 22 B 325 ARG ALA ALA ILE ALA GLU MET ASP LEU ASP SER ALA GLU SEQRES 23 B 325 GLY ARG VAL ALA ALA LEU ARG ARG CYS VAL PRO MET VAL SEQRES 24 B 325 GLY GLN ILE LYS ASP PRO THR LEU ARG ASP GLU TYR ALA SEQRES 25 B 325 ARG GLN LEU ALA GLY TRP VAL GLY TRP ALA ASP VAL ALA SEQRES 1 C 12 DC DC DA DC DT DT DC DC DG DG DT DC SEQRES 1 D 13 DT DG DA DC DC DG DG DA DA DG DT DG DG HELIX 1 AA1 SER A 113 LEU A 132 1 20 HELIX 2 AA2 ALA A 137 ARG A 147 1 11 HELIX 3 AA3 ASP A 150 PHE A 157 1 8 HELIX 4 AA4 ASP A 167 LYS A 176 1 10 HELIX 5 AA5 GLU A 179 ALA A 186 1 8 HELIX 6 AA6 GLY A 250 HIS A 262 1 13 HELIX 7 AA7 GLY A 269 ALA A 279 1 11 HELIX 8 AA8 GLY A 293 MET A 305 1 13 HELIX 9 AA9 ASP A 321 ALA A 331 1 11 HELIX 10 AB1 PRO A 348 MET A 351 5 4 HELIX 11 AB2 ASP A 352 ARG A 371 1 20 HELIX 12 AB3 LEU A 375 ALA A 385 1 11 HELIX 13 AB4 SER A 391 GLN A 408 1 18 HELIX 14 AB5 ASP A 411 VAL A 426 1 16 HELIX 15 AB6 SER B 113 LEU B 132 1 20 HELIX 16 AB7 ALA B 137 ARG B 147 1 11 HELIX 17 AB8 ASP B 150 PHE B 157 1 8 HELIX 18 AB9 ASP B 167 ARG B 175 1 9 HELIX 19 AC1 GLU B 179 GLY B 187 1 9 HELIX 20 AC2 GLY B 250 HIS B 262 1 13 HELIX 21 AC3 GLY B 269 ALA B 279 1 11 HELIX 22 AC4 GLY B 293 MET B 304 1 12 HELIX 23 AC5 GLY B 320 ALA B 331 1 12 HELIX 24 AC6 LEU B 338 GLY B 340 5 3 HELIX 25 AC7 ASP B 352 GLY B 361 1 10 HELIX 26 AC8 ASP B 362 ARG B 371 1 10 HELIX 27 AC9 LEU B 375 GLU B 386 1 12 HELIX 28 AD1 SER B 391 GLN B 408 1 18 HELIX 29 AD2 ASP B 411 GLN B 421 1 11 HELIX 30 AD3 GLN B 421 GLY B 427 1 7 SHEET 1 AA1 4 GLY A 160 ALA A 162 0 SHEET 2 AA1 4 ARG A 203 ARG A 209 -1 O ARG A 203 N ALA A 162 SHEET 3 AA1 4 VAL A 215 ARG A 222 -1 O GLY A 217 N ILE A 208 SHEET 4 AA1 4 TYR A 233 ASN A 235 -1 O VAL A 234 N ALA A 220 SHEET 1 AA2 2 SER A 189 GLY A 192 0 SHEET 2 AA2 2 GLY A 195 ASP A 198 -1 O MET A 197 N ARG A 190 SHEET 1 AA3 6 MET A 248 PHE A 249 0 SHEET 2 AA3 6 ALA A 284 SER A 287 -1 O ALA A 286 N PHE A 249 SHEET 3 AA3 6 GLN A 263 VAL A 267 1 N VAL A 265 O VAL A 285 SHEET 4 AA3 6 GLU A 313 PHE A 318 1 O ILE A 315 N ALA A 264 SHEET 5 AA3 6 SER A 342 VAL A 346 1 O PHE A 343 N TYR A 316 SHEET 6 AA3 6 THR A 373 PRO A 374 -1 O THR A 373 N VAL A 344 SHEET 1 AA4 4 GLY B 160 ALA B 162 0 SHEET 2 AA4 4 ARG B 203 ARG B 209 -1 O LEU B 205 N GLY B 160 SHEET 3 AA4 4 VAL B 215 ARG B 222 -1 O ARG B 221 N LEU B 204 SHEET 4 AA4 4 TYR B 233 ASN B 235 -1 O VAL B 234 N ALA B 220 SHEET 1 AA5 2 SER B 189 GLY B 192 0 SHEET 2 AA5 2 GLY B 195 ASP B 198 -1 O MET B 197 N ARG B 190 SHEET 1 AA6 6 MET B 248 PHE B 249 0 SHEET 2 AA6 6 ALA B 284 SER B 287 -1 O ALA B 286 N PHE B 249 SHEET 3 AA6 6 ALA B 264 VAL B 267 1 N VAL B 267 O VAL B 285 SHEET 4 AA6 6 LEU B 314 PHE B 318 1 O VAL B 317 N VAL B 266 SHEET 5 AA6 6 SER B 342 VAL B 346 1 O PHE B 343 N TYR B 316 SHEET 6 AA6 6 THR B 373 PRO B 374 -1 O THR B 373 N VAL B 344 CRYST1 43.995 210.414 47.752 90.00 108.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022730 0.000000 0.007650 0.00000 SCALE2 0.000000 0.004753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022096 0.00000