HEADER OXIDOREDUCTASE 09-JUN-17 5W4C TITLE CRYSTAL STRUCTURE OF THIOREDOXIN REDUCTASE FROM CRYPTOCOCCUS TITLE 2 NEOFORMANS IN COMPLEX WITH FAD (FO CONFORMATION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOCOCCUS NEOFORMANS VAR. GRUBII SEROTYPE A SOURCE 3 (STRAIN H99 / ATCC 208821 / CBS 10515 / FGSC 9487); SOURCE 4 ORGANISM_TAXID: 235443; SOURCE 5 STRAIN: H99 / ATCC 208821 / CBS 10515 / FGSC 9487; SOURCE 6 ATCC: 208821/CBS; SOURCE 7 GENE: CNAG_05847; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21A KEYWDS THIOREDOXIN REDUCTASE CRYPTOCOCCUS NEOFORMANS X-RAY DIFFRACTION, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.P.BRAVO-CHAUCANES,N.F.VALADARES,M.S.S.FELIPE,J.A.R.G.BARBOSA REVDAT 4 04-OCT-23 5W4C 1 LINK REVDAT 3 08-JAN-20 5W4C 1 REMARK REVDAT 2 17-APR-19 5W4C 1 REMARK REVDAT 1 13-JUN-18 5W4C 0 JRNL AUTH C.P.BRAVO-CHAUCANES,N.F.VALADARES,M.S.S.FELIPE, JRNL AUTH 2 J.A.R.G.BARBOSA JRNL TITL CRYSTAL STRUCTURE OF THIOREDOXIN REDUCTASE FROM CRYPTOCOCCUS JRNL TITL 2 NEOFORMANS IN COMPLEX WITH FAD (FO CONFORMATION) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9460 - 5.1519 1.00 2689 133 0.2314 0.2458 REMARK 3 2 5.1519 - 4.0934 1.00 2580 124 0.1458 0.1981 REMARK 3 3 4.0934 - 3.5771 1.00 2535 143 0.1293 0.2059 REMARK 3 4 3.5771 - 3.2506 1.00 2516 145 0.1398 0.1861 REMARK 3 5 3.2506 - 3.0179 1.00 2504 131 0.1447 0.1990 REMARK 3 6 3.0179 - 2.8402 1.00 2514 129 0.1580 0.2211 REMARK 3 7 2.8402 - 2.6981 1.00 2487 135 0.1701 0.2639 REMARK 3 8 2.6981 - 2.5807 1.00 2474 155 0.1744 0.2560 REMARK 3 9 2.5807 - 2.4814 1.00 2489 138 0.1808 0.2716 REMARK 3 10 2.4814 - 2.3958 1.00 2463 138 0.1841 0.3014 REMARK 3 11 2.3958 - 2.3210 1.00 2476 132 0.1777 0.2475 REMARK 3 12 2.3210 - 2.2546 0.99 2462 133 0.2025 0.3049 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5380 REMARK 3 ANGLE : 0.883 7324 REMARK 3 CHIRALITY : 0.053 838 REMARK 3 PLANARITY : 0.005 930 REMARK 3 DIHEDRAL : 8.875 3119 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -4.2057 15.5006 -0.5499 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.1851 REMARK 3 T33: 0.1640 T12: -0.0126 REMARK 3 T13: 0.0022 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.1928 L22: 0.9516 REMARK 3 L33: 0.3212 L12: -0.1438 REMARK 3 L13: -0.0339 L23: 0.1020 REMARK 3 S TENSOR REMARK 3 S11: -0.0123 S12: -0.0189 S13: -0.0056 REMARK 3 S21: -0.0349 S22: 0.0094 S23: 0.1144 REMARK 3 S31: 0.0117 S32: -0.0353 S33: 0.0054 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W4C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4586 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO HKL 2000-7044 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK HKL2000-7044 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 27.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.20400 REMARK 200 R SYM (I) : 0.20400 REMARK 200 FOR THE DATA SET : 2.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82900 REMARK 200 R SYM FOR SHELL (I) : 0.82800 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 7.0.004 REMARK 200 STARTING MODEL: 3ITJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11.4% PEG 8000, 20% V/V GLYCEROL, 80 REMARK 280 MM MES PH 6.3 AND 160 MM CALCIUM ACETATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.07000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.17700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.41400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.17700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.07000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.41400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 ILE A 4 REMARK 465 ALA A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 HIS A 8 REMARK 465 PRO A 9 REMARK 465 HIS A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 LYS A 370 REMARK 465 GLU A 371 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 465 ILE B 4 REMARK 465 ALA B 5 REMARK 465 ASN B 6 REMARK 465 GLY B 7 REMARK 465 HIS B 8 REMARK 465 PRO B 9 REMARK 465 HIS B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 SER B 352 REMARK 465 LEU B 353 REMARK 465 GLN B 354 REMARK 465 THR B 355 REMARK 465 GLU B 356 REMARK 465 ASP B 357 REMARK 465 VAL B 358 REMARK 465 HIS B 359 REMARK 465 VAL B 360 REMARK 465 PRO B 361 REMARK 465 ALA B 362 REMARK 465 GLU B 363 REMARK 465 HIS B 364 REMARK 465 TYR B 365 REMARK 465 LEU B 366 REMARK 465 GLY B 367 REMARK 465 THR B 368 REMARK 465 ASP B 369 REMARK 465 LYS B 370 REMARK 465 GLU B 371 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 ARG A 213 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 215 CG OD1 OD2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 SER A 220 CB OG REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 ILE A 222 CG1 CG2 CD1 REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 353 CG CD1 CD2 REMARK 470 HIS A 364 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 ARG B 153 CZ NH1 NH2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 ARG B 214 NE CZ NH1 NH2 REMARK 470 ASP B 215 CG OD1 OD2 REMARK 470 ARG B 218 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 ASP B 349 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 618 O HOH B 624 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 21 46.23 -95.36 REMARK 500 THR A 77 -109.55 -103.67 REMARK 500 GLU A 131 58.74 -118.08 REMARK 500 GLN A 164 11.71 59.21 REMARK 500 GLU A 249 -38.77 -137.54 REMARK 500 ALA A 362 57.70 -147.22 REMARK 500 TYR A 365 -57.81 -125.38 REMARK 500 LEU B 156 101.43 -160.43 REMARK 500 ILE B 276 -164.46 -116.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 656 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 657 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 639 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 640 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH B 641 DISTANCE = 9.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 112 OE1 REMARK 620 2 GLU A 112 OE2 44.2 REMARK 620 3 GLU A 129 O 82.1 114.0 REMARK 620 4 GLU A 131 OE1 121.3 92.0 87.2 REMARK 620 5 GLU A 131 OE2 75.0 59.6 74.2 46.7 REMARK 620 6 HOH A 632 O 125.7 90.0 152.2 77.9 109.8 REMARK 620 7 HOH A 640 O 144.5 155.5 90.2 92.7 135.9 67.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 130 O REMARK 620 2 GLU B 263 OE1 64.8 REMARK 620 3 HOH B 588 O 65.8 2.8 REMARK 620 4 HOH B 616 O 64.2 1.7 1.9 REMARK 620 5 HOH B 623 O 67.2 2.5 3.5 3.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 112 OE1 REMARK 620 2 GLU B 112 OE2 51.0 REMARK 620 3 GLU B 129 O 80.3 126.5 REMARK 620 4 GLU B 131 OE1 85.2 85.3 67.8 REMARK 620 5 GLU B 131 OE2 136.4 109.1 90.3 52.3 REMARK 620 6 HOH B 597 O 134.5 144.8 83.7 126.7 85.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 404 DBREF 5W4C A 1 371 UNP J9VRX9 J9VRX9_CRYNH 1 371 DBREF 5W4C B 1 371 UNP J9VRX9 J9VRX9_CRYNH 1 371 SEQRES 1 A 371 MET SER PRO ILE ALA ASN GLY HIS PRO HIS GLY SER SER SEQRES 2 A 371 PHE GLY VAL ARG GLU PRO LYS ARG THR GLY GLU VAL SER SEQRES 3 A 371 LYS LYS MET HIS SER LYS VAL VAL ILE ILE GLY SER GLY SEQRES 4 A 371 PRO GLY GLY HIS THR ALA ALA ILE TYR LEU ALA ARG ALA SEQRES 5 A 371 ASN LEU GLU PRO VAL LEU TYR GLU GLY MET LEU ALA ASN SEQRES 6 A 371 GLY PHE ALA PRO GLY GLY GLN LEU THR THR THR THR ASP SEQRES 7 A 371 VAL GLU ASN PHE PRO GLY PHE PRO GLU GLY VAL THR GLY SEQRES 8 A 371 THR GLU MET MET ASP LYS PHE ARG ALA GLN SER GLU ARG SEQRES 9 A 371 PHE GLY THR LYS ILE ILE THR GLU THR VAL ALA ARG VAL SEQRES 10 A 371 ASP LEU SER VAL ARG PRO PHE LYS TYR TRP THR GLU GLY SEQRES 11 A 371 GLU GLU GLU GLU HIS GLU PHE MET THR ALA ASP THR ILE SEQRES 12 A 371 ILE LEU ALA THR GLY ALA SER ALA LYS ARG LEU PHE LEU SEQRES 13 A 371 PRO GLY GLU GLU THR TYR TRP GLN SER GLY ILE SER ALA SEQRES 14 A 371 CYS ALA VAL CYS ASP GLY ALA VAL PRO ILE PHE ARG GLN SEQRES 15 A 371 LYS PRO LEU ALA VAL ILE GLY GLY GLY ASP SER ALA ALA SEQRES 16 A 371 GLU GLU ALA THR TYR LEU THR LYS TYR GLY SER HIS VAL SEQRES 17 A 371 TYR VAL LEU VAL ARG ARG ASP GLU LEU ARG ALA SER LYS SEQRES 18 A 371 ILE MET ALA LYS ARG LEU THR SER HIS PRO LYS VAL THR SEQRES 19 A 371 VAL LEU TRP ASN THR VAL ALA THR GLU ALA LYS GLY ASP SEQRES 20 A 371 GLY GLU VAL LEU THR SER LEU THR ILE LYS ASN THR LYS SEQRES 21 A 371 THR GLY GLU THR GLY ASP LEU PRO VAL ASN GLY LEU PHE SEQRES 22 A 371 TYR ALA ILE GLY HIS GLU PRO ALA THR SER LEU VAL LYS SEQRES 23 A 371 SER GLN VAL GLU LEU ASP SER ASP GLY TYR ILE LYS THR SEQRES 24 A 371 VAL PRO GLY THR SER GLN THR SER VAL HIS GLY VAL PHE SEQRES 25 A 371 ALA ALA GLY ASP VAL GLN ASP LYS LYS TYR ARG GLN ALA SEQRES 26 A 371 ILE THR SER ALA GLY SER GLY CYS ILE ALA ALA LEU GLU SEQRES 27 A 371 ALA GLU ARG LEU ILE SER GLU GLU GLU ALA ASP ASP GLU SEQRES 28 A 371 SER LEU GLN THR GLU ASP VAL HIS VAL PRO ALA GLU HIS SEQRES 29 A 371 TYR LEU GLY THR ASP LYS GLU SEQRES 1 B 371 MET SER PRO ILE ALA ASN GLY HIS PRO HIS GLY SER SER SEQRES 2 B 371 PHE GLY VAL ARG GLU PRO LYS ARG THR GLY GLU VAL SER SEQRES 3 B 371 LYS LYS MET HIS SER LYS VAL VAL ILE ILE GLY SER GLY SEQRES 4 B 371 PRO GLY GLY HIS THR ALA ALA ILE TYR LEU ALA ARG ALA SEQRES 5 B 371 ASN LEU GLU PRO VAL LEU TYR GLU GLY MET LEU ALA ASN SEQRES 6 B 371 GLY PHE ALA PRO GLY GLY GLN LEU THR THR THR THR ASP SEQRES 7 B 371 VAL GLU ASN PHE PRO GLY PHE PRO GLU GLY VAL THR GLY SEQRES 8 B 371 THR GLU MET MET ASP LYS PHE ARG ALA GLN SER GLU ARG SEQRES 9 B 371 PHE GLY THR LYS ILE ILE THR GLU THR VAL ALA ARG VAL SEQRES 10 B 371 ASP LEU SER VAL ARG PRO PHE LYS TYR TRP THR GLU GLY SEQRES 11 B 371 GLU GLU GLU GLU HIS GLU PHE MET THR ALA ASP THR ILE SEQRES 12 B 371 ILE LEU ALA THR GLY ALA SER ALA LYS ARG LEU PHE LEU SEQRES 13 B 371 PRO GLY GLU GLU THR TYR TRP GLN SER GLY ILE SER ALA SEQRES 14 B 371 CYS ALA VAL CYS ASP GLY ALA VAL PRO ILE PHE ARG GLN SEQRES 15 B 371 LYS PRO LEU ALA VAL ILE GLY GLY GLY ASP SER ALA ALA SEQRES 16 B 371 GLU GLU ALA THR TYR LEU THR LYS TYR GLY SER HIS VAL SEQRES 17 B 371 TYR VAL LEU VAL ARG ARG ASP GLU LEU ARG ALA SER LYS SEQRES 18 B 371 ILE MET ALA LYS ARG LEU THR SER HIS PRO LYS VAL THR SEQRES 19 B 371 VAL LEU TRP ASN THR VAL ALA THR GLU ALA LYS GLY ASP SEQRES 20 B 371 GLY GLU VAL LEU THR SER LEU THR ILE LYS ASN THR LYS SEQRES 21 B 371 THR GLY GLU THR GLY ASP LEU PRO VAL ASN GLY LEU PHE SEQRES 22 B 371 TYR ALA ILE GLY HIS GLU PRO ALA THR SER LEU VAL LYS SEQRES 23 B 371 SER GLN VAL GLU LEU ASP SER ASP GLY TYR ILE LYS THR SEQRES 24 B 371 VAL PRO GLY THR SER GLN THR SER VAL HIS GLY VAL PHE SEQRES 25 B 371 ALA ALA GLY ASP VAL GLN ASP LYS LYS TYR ARG GLN ALA SEQRES 26 B 371 ILE THR SER ALA GLY SER GLY CYS ILE ALA ALA LEU GLU SEQRES 27 B 371 ALA GLU ARG LEU ILE SER GLU GLU GLU ALA ASP ASP GLU SEQRES 28 B 371 SER LEU GLN THR GLU ASP VAL HIS VAL PRO ALA GLU HIS SEQRES 29 B 371 TYR LEU GLY THR ASP LYS GLU HET FAD A 401 53 HET GOL A 402 6 HET PEG A 403 7 HET CA A 404 1 HET ACT A 405 4 HET FAD B 401 53 HET GOL B 402 6 HET CA B 403 1 HET CA B 404 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 PEG C4 H10 O3 FORMUL 6 CA 3(CA 2+) FORMUL 7 ACT C2 H3 O2 1- FORMUL 12 HOH *298(H2 O) HELIX 1 AA1 GLY A 39 ALA A 52 1 14 HELIX 2 AA2 LEU A 63 PHE A 67 5 5 HELIX 3 AA3 GLY A 70 THR A 76 5 7 HELIX 4 AA4 GLY A 91 PHE A 105 1 15 HELIX 5 AA5 GLU A 133 PHE A 137 5 5 HELIX 6 AA6 GLY A 158 TRP A 163 1 6 HELIX 7 AA7 CYS A 170 GLY A 175 1 6 HELIX 8 AA8 VAL A 177 ARG A 181 5 5 HELIX 9 AA9 GLY A 191 THR A 202 1 12 HELIX 10 AB1 ILE A 222 SER A 229 1 8 HELIX 11 AB2 THR A 282 LYS A 286 5 5 HELIX 12 AB3 GLY A 315 ASP A 319 5 5 HELIX 13 AB4 GLN A 324 ASP A 349 1 26 HELIX 14 AB5 GLN A 354 VAL A 358 5 5 HELIX 15 AB6 GLY B 39 ALA B 52 1 14 HELIX 16 AB7 LEU B 63 PHE B 67 5 5 HELIX 17 AB8 GLY B 71 THR B 76 5 6 HELIX 18 AB9 THR B 90 PHE B 105 1 16 HELIX 19 AC1 GLU B 133 PHE B 137 5 5 HELIX 20 AC2 GLY B 158 TRP B 163 1 6 HELIX 21 AC3 CYS B 170 GLY B 175 1 6 HELIX 22 AC4 VAL B 177 ARG B 181 5 5 HELIX 23 AC5 GLY B 191 LYS B 203 1 13 HELIX 24 AC6 SER B 220 SER B 229 1 10 HELIX 25 AC7 THR B 282 LYS B 286 5 5 HELIX 26 AC8 GLY B 315 ASP B 319 5 5 HELIX 27 AC9 GLN B 324 ASP B 350 1 27 SHEET 1 AA1 6 LYS A 108 ILE A 110 0 SHEET 2 AA1 6 VAL A 57 TYR A 59 1 N LEU A 58 O ILE A 110 SHEET 3 AA1 6 HIS A 30 ILE A 36 1 N ILE A 35 O VAL A 57 SHEET 4 AA1 6 MET A 138 LEU A 145 1 O ILE A 144 N VAL A 34 SHEET 5 AA1 6 PHE A 124 THR A 128 -1 N TYR A 126 O MET A 138 SHEET 6 AA1 6 VAL A 114 ASP A 118 -1 N ASP A 118 O LYS A 125 SHEET 1 AA2 5 LYS A 108 ILE A 110 0 SHEET 2 AA2 5 VAL A 57 TYR A 59 1 N LEU A 58 O ILE A 110 SHEET 3 AA2 5 HIS A 30 ILE A 36 1 N ILE A 35 O VAL A 57 SHEET 4 AA2 5 MET A 138 LEU A 145 1 O ILE A 144 N VAL A 34 SHEET 5 AA2 5 VAL A 311 ALA A 313 1 O PHE A 312 N LEU A 145 SHEET 1 AA3 2 ASP A 78 VAL A 79 0 SHEET 2 AA3 2 VAL A 89 THR A 90 -1 O VAL A 89 N VAL A 79 SHEET 1 AA4 2 ALA A 149 ALA A 151 0 SHEET 2 AA4 2 HIS A 278 PRO A 280 -1 O GLU A 279 N SER A 150 SHEET 1 AA5 5 ILE A 167 SER A 168 0 SHEET 2 AA5 5 GLY A 271 TYR A 274 1 O LEU A 272 N SER A 168 SHEET 3 AA5 5 PRO A 184 ILE A 188 1 N ALA A 186 O GLY A 271 SHEET 4 AA5 5 HIS A 207 LEU A 211 1 O TYR A 209 N LEU A 185 SHEET 5 AA5 5 VAL A 233 LEU A 236 1 O LEU A 236 N VAL A 210 SHEET 1 AA6 3 THR A 239 GLY A 246 0 SHEET 2 AA6 3 LEU A 251 ASN A 258 -1 O THR A 255 N THR A 242 SHEET 3 AA6 3 THR A 264 LEU A 267 -1 O LEU A 267 N LEU A 254 SHEET 1 AA7 6 LYS B 108 ILE B 110 0 SHEET 2 AA7 6 VAL B 57 TYR B 59 1 N LEU B 58 O ILE B 110 SHEET 3 AA7 6 HIS B 30 ILE B 36 1 N ILE B 35 O VAL B 57 SHEET 4 AA7 6 MET B 138 LEU B 145 1 O ILE B 144 N ILE B 36 SHEET 5 AA7 6 PHE B 124 THR B 128 -1 N TYR B 126 O MET B 138 SHEET 6 AA7 6 VAL B 114 ASP B 118 -1 N ASP B 118 O LYS B 125 SHEET 1 AA8 5 LYS B 108 ILE B 110 0 SHEET 2 AA8 5 VAL B 57 TYR B 59 1 N LEU B 58 O ILE B 110 SHEET 3 AA8 5 HIS B 30 ILE B 36 1 N ILE B 35 O VAL B 57 SHEET 4 AA8 5 MET B 138 LEU B 145 1 O ILE B 144 N ILE B 36 SHEET 5 AA8 5 VAL B 311 ALA B 313 1 O PHE B 312 N LEU B 145 SHEET 1 AA9 2 ALA B 149 ALA B 151 0 SHEET 2 AA9 2 HIS B 278 PRO B 280 -1 O GLU B 279 N SER B 150 SHEET 1 AB1 5 ILE B 167 SER B 168 0 SHEET 2 AB1 5 GLY B 271 TYR B 274 1 O LEU B 272 N SER B 168 SHEET 3 AB1 5 PRO B 184 ILE B 188 1 N ALA B 186 O GLY B 271 SHEET 4 AB1 5 HIS B 207 LEU B 211 1 O LEU B 211 N VAL B 187 SHEET 5 AB1 5 VAL B 233 LEU B 236 1 O LEU B 236 N VAL B 210 SHEET 1 AB2 3 THR B 239 GLY B 246 0 SHEET 2 AB2 3 LEU B 251 ASN B 258 -1 O THR B 252 N LYS B 245 SHEET 3 AB2 3 THR B 264 PRO B 268 -1 O LEU B 267 N LEU B 254 SSBOND 1 CYS A 170 CYS A 173 1555 1555 2.04 SSBOND 2 CYS B 170 CYS B 173 1555 1555 2.04 LINK OE1 GLU A 112 CA CA A 404 1555 1555 2.35 LINK OE2 GLU A 112 CA CA A 404 1555 1555 3.15 LINK O GLU A 129 CA CA A 404 1555 1555 2.41 LINK O GLY A 130 CA CA B 403 1555 3545 2.41 LINK OE1 GLU A 131 CA CA A 404 1555 1555 2.64 LINK OE2 GLU A 131 CA CA A 404 1555 1555 2.87 LINK CA CA A 404 O HOH A 632 1555 1555 2.75 LINK CA CA A 404 O HOH A 640 1555 1555 2.91 LINK OE1 GLU B 112 CA CA B 404 1555 1555 2.64 LINK OE2 GLU B 112 CA CA B 404 1555 1555 2.43 LINK O GLU B 129 CA CA B 404 1555 1555 2.57 LINK OE1 GLU B 131 CA CA B 404 1555 1555 2.58 LINK OE2 GLU B 131 CA CA B 404 1555 1555 2.39 LINK OE1 GLU B 263 CA CA B 403 1555 1555 2.35 LINK CA CA B 403 O HOH B 588 1555 1555 2.45 LINK CA CA B 403 O HOH B 616 1555 1555 2.83 LINK CA CA B 403 O HOH B 623 1555 1555 2.89 LINK CA CA B 404 O HOH B 597 1555 1555 2.47 CISPEP 1 ARG A 122 PRO A 123 0 -1.40 CISPEP 2 ARG B 122 PRO B 123 0 1.01 SITE 1 AC1 41 ILE A 36 GLY A 37 SER A 38 GLY A 39 SITE 2 AC1 41 PRO A 40 GLY A 41 TYR A 59 GLU A 60 SITE 3 AC1 41 GLY A 61 ALA A 64 PHE A 67 ALA A 68 SITE 4 AC1 41 GLY A 71 GLN A 72 LEU A 73 THR A 76 SITE 5 AC1 41 ASN A 81 GLU A 112 THR A 113 VAL A 114 SITE 6 AC1 41 THR A 147 GLY A 148 ALA A 149 CYS A 173 SITE 7 AC1 41 LEU A 284 GLY A 315 ASP A 316 ARG A 323 SITE 8 AC1 41 GLN A 324 ALA A 325 SER A 328 PEG A 403 SITE 9 AC1 41 HOH A 506 HOH A 509 HOH A 517 HOH A 524 SITE 10 AC1 41 HOH A 528 HOH A 535 HOH A 543 HOH A 576 SITE 11 AC1 41 TYR B 48 SITE 1 AC2 7 THR A 327 SER A 331 HOH A 557 HOH A 606 SITE 2 AC2 7 THR B 327 GLY B 330 ILE B 334 SITE 1 AC3 6 THR A 75 GLN A 164 SER A 168 ALA A 169 SITE 2 AC3 6 ASP A 174 FAD A 401 SITE 1 AC4 5 GLU A 112 GLU A 129 GLU A 131 HOH A 632 SITE 2 AC4 5 HOH A 640 SITE 1 AC5 2 THR A 242 HOH A 594 SITE 1 AC6 43 TYR A 48 TYR A 365 ILE B 36 GLY B 37 SITE 2 AC6 43 SER B 38 GLY B 39 PRO B 40 GLY B 41 SITE 3 AC6 43 TYR B 59 GLU B 60 GLY B 61 ALA B 64 SITE 4 AC6 43 ASN B 65 PHE B 67 ALA B 68 GLY B 71 SITE 5 AC6 43 GLN B 72 LEU B 73 THR B 75 THR B 76 SITE 6 AC6 43 ASN B 81 GLU B 112 THR B 113 VAL B 114 SITE 7 AC6 43 THR B 147 GLY B 148 ALA B 149 CYS B 173 SITE 8 AC6 43 LEU B 284 GLY B 315 ASP B 316 ARG B 323 SITE 9 AC6 43 GLN B 324 ALA B 325 SER B 328 HOH B 507 SITE 10 AC6 43 HOH B 512 HOH B 515 HOH B 525 HOH B 527 SITE 11 AC6 43 HOH B 548 HOH B 549 HOH B 566 SITE 1 AC7 5 GLU A 263 ASP B 96 ARG B 99 ALA B 100 SITE 2 AC7 5 GLU B 103 SITE 1 AC8 5 GLY A 130 GLU B 263 HOH B 588 HOH B 616 SITE 2 AC8 5 HOH B 623 SITE 1 AC9 4 GLU B 112 GLU B 129 GLU B 131 HOH B 597 CRYST1 86.140 108.828 70.354 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011609 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014214 0.00000