HEADER DE NOVO PROTEIN 11-JUN-17 5W4I TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A BETA-HAIRPIN PEPTIDE MIMIC TITLE 2 DERIVED FROM ABETA 16-36. RIGAKU DATA SET. (ORN)KLV(MEA)FAE(ORN) TITLE 3 AIIGLMV. COMPND MOL_ID: 1; COMPND 2 MOLECULE: A-BETA 17_36: ORN-LYS-LEU-VAL-MEA-PHE-ALA-GLU-ORN-ALA-ILE- COMPND 3 ILE-GLY-LEU-MET-VAL; COMPND 4 CHAIN: A, B, C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS AMYLOID, OLIGOMER, ALZHEIMER'S, TRIMER, PROTEIN FIBRIL, DE NOVO KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.G.KREUTZER,K.J.MCKNELLY,J.S.NOWICK REVDAT 3 01-JAN-20 5W4I 1 REMARK REVDAT 2 29-NOV-17 5W4I 1 JRNL REVDAT 1 22-NOV-17 5W4I 0 JRNL AUTH A.G.KREUTZER,R.K.SPENCER,K.J.MCKNELLY,S.YOO,I.L.HAMZA, JRNL AUTH 2 P.J.SALVESON,J.S.NOWICK JRNL TITL A HEXAMER OF A PEPTIDE DERIVED FROM A BETA 16-36. JRNL REF BIOCHEMISTRY V. 56 6061 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 29028351 JRNL DOI 10.1021/ACS.BIOCHEM.7B00831 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 3806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.110 REMARK 3 FREE R VALUE TEST SET COUNT : 663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.5575 - 3.4595 1.00 1189 138 0.1850 0.2077 REMARK 3 2 3.4595 - 2.7483 1.00 1177 132 0.1991 0.2608 REMARK 3 3 2.7483 - 2.4016 1.00 1173 137 0.2250 0.2361 REMARK 3 4 2.4016 - 2.1824 1.00 1167 131 0.2355 0.2757 REMARK 3 5 2.1824 - 2.0261 0.99 1188 125 0.2726 0.3821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 381 REMARK 3 ANGLE : 1.156 501 REMARK 3 CHIRALITY : 0.069 63 REMARK 3 PLANARITY : 0.004 57 REMARK 3 DIHEDRAL : 28.321 243 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5245 13.7672 6.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.2125 T22: 0.1962 REMARK 3 T33: 0.2043 T12: 0.0212 REMARK 3 T13: -0.0159 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 6.7914 L22: 3.0552 REMARK 3 L33: 1.8335 L12: 2.2516 REMARK 3 L13: 0.9796 L23: 0.0781 REMARK 3 S TENSOR REMARK 3 S11: -0.1769 S12: -0.3039 S13: -0.0796 REMARK 3 S21: -0.2106 S22: -0.0073 S23: 0.1572 REMARK 3 S31: -0.0504 S32: 0.2168 S33: 0.1079 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8009 21.1598 -0.5735 REMARK 3 T TENSOR REMARK 3 T11: 0.2206 T22: 0.2183 REMARK 3 T33: 0.2773 T12: 0.0374 REMARK 3 T13: -0.0003 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 4.0159 L22: 4.1198 REMARK 3 L33: 8.3032 L12: -1.0297 REMARK 3 L13: -1.4639 L23: 2.7901 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.0866 S13: -0.0018 REMARK 3 S21: 0.1620 S22: 0.1127 S23: -0.3074 REMARK 3 S31: -0.1336 S32: -0.2417 S33: -0.1538 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5002 13.1359 -5.8163 REMARK 3 T TENSOR REMARK 3 T11: 0.1656 T22: 0.2396 REMARK 3 T33: 0.2172 T12: 0.0290 REMARK 3 T13: -0.0148 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 3.9868 L22: 8.9040 REMARK 3 L33: 2.8251 L12: 1.5179 REMARK 3 L13: -1.2500 L23: -2.3896 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.3885 S13: 0.2336 REMARK 3 S21: -0.1299 S22: 0.0449 S23: -0.0815 REMARK 3 S31: -0.0687 S32: -0.1731 S33: -0.0507 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 133 REMARK 200 PH : 7.0-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3808 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.026 REMARK 200 RESOLUTION RANGE LOW (A) : 19.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 36.80 REMARK 200 R MERGE (I) : 0.03415 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 17.20 REMARK 200 R MERGE FOR SHELL (I) : 0.26760 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES SODIUM BUFFER (PH 7.5), REMARK 280 0.2 M SODIUM CITRATE, 22% ISOPROPANOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y,X,-Z REMARK 290 14555 -Y,-X,-Z REMARK 290 15555 Y,-X,Z REMARK 290 16555 -Y,X,Z REMARK 290 17555 X,Z,-Y REMARK 290 18555 -X,Z,Y REMARK 290 19555 -X,-Z,-Y REMARK 290 20555 X,-Z,Y REMARK 290 21555 Z,Y,-X REMARK 290 22555 Z,-Y,X REMARK 290 23555 -Z,Y,X REMARK 290 24555 -Z,-Y,-X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 24-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -348.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.74600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 67.74600 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 67.74600 REMARK 350 BIOMT2 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 -1.000000 0.000000 0.000000 67.74600 REMARK 350 BIOMT2 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 I IOD A 103 LIES ON A SPECIAL POSITION. REMARK 375 I IOD B 102 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 208 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 209 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 109 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 110 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 103 O HOH C 108 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ILE B 11 H GLY B 13 13555 1.55 REMARK 500 O HOH A 202 O HOH B 207 20555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 16 C - N - CA ANGL. DEV. = 17.3 DEGREES REMARK 500 VAL C 16 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 213 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH C 109 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH C 110 DISTANCE = 8.61 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 105 DBREF 5W4I A 1 16 PDB 5W4I 5W4I 1 16 DBREF 5W4I B 1 16 PDB 5W4I 5W4I 1 16 DBREF 5W4I C 1 16 PDB 5W4I 5W4I 1 16 SEQRES 1 A 16 ORN LYS LEU VAL MEA PHE ALA GLU ORN ALA ILE ILE GLY SEQRES 2 A 16 LEU MET VAL SEQRES 1 B 16 ORN LYS LEU VAL MEA PHE ALA GLU ORN ALA ILE ILE GLY SEQRES 2 B 16 LEU MET VAL SEQRES 1 C 16 ORN LYS LEU VAL MEA PHE ALA GLU ORN ALA ILE ILE GLY SEQRES 2 C 16 LEU MET VAL HET ORN A 1 19 HET MEA A 5 23 HET ORN A 9 19 HET ORN B 1 19 HET MEA B 5 23 HET ORN B 9 19 HET ORN C 1 19 HET MEA C 5 23 HET ORN C 9 19 HET CL A 101 1 HET CL A 102 1 HET IOD A 103 1 HET IOD A 104 1 HET IOD A 105 1 HET CL B 101 1 HET IOD B 102 1 HET IOD B 103 1 HETNAM ORN L-ORNITHINE HETNAM MEA N-METHYLPHENYLALANINE HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION FORMUL 1 ORN 6(C5 H12 N2 O2) FORMUL 1 MEA 3(C10 H13 N O2) FORMUL 4 CL 3(CL 1-) FORMUL 6 IOD 5(I 1-) FORMUL 12 HOH *32(H2 O) SHEET 1 AA1 4 ILE A 11 VAL A 16 0 SHEET 2 AA1 4 LYS A 2 ALA A 7 -1 N VAL A 4 O LEU A 14 SHEET 3 AA1 4 LYS B 2 ALA B 7 -1 O MEA B 5 N LEU A 3 SHEET 4 AA1 4 ILE B 11 VAL B 16 -1 O LEU B 14 N VAL B 4 SHEET 1 AA2 2 LYS C 2 ALA C 7 0 SHEET 2 AA2 2 ILE C 11 VAL C 16 -1 O LEU C 14 N VAL C 4 LINK NE ORN A 1 C VAL A 16 1555 1555 1.38 LINK C ORN A 1 N LYS A 2 1555 1555 1.37 LINK C VAL A 4 N MEA A 5 1555 1555 1.33 LINK C MEA A 5 N PHE A 6 1555 1555 1.33 LINK C GLU A 8 NE ORN A 9 1555 1555 1.38 LINK C ORN A 9 N ALA A 10 1555 1555 1.37 LINK NE ORN B 1 C VAL B 16 1555 1555 1.38 LINK C ORN B 1 N LYS B 2 1555 1555 1.37 LINK C VAL B 4 N MEA B 5 1555 1555 1.34 LINK C MEA B 5 N PHE B 6 1555 1555 1.33 LINK C GLU B 8 NE ORN B 9 1555 1555 1.38 LINK C ORN B 9 N ALA B 10 1555 1555 1.37 LINK NE ORN C 1 C VAL C 16 1555 1555 1.38 LINK C ORN C 1 N LYS C 2 1555 1555 1.37 LINK C VAL C 4 N MEA C 5 1555 1555 1.34 LINK C MEA C 5 N PHE C 6 1555 1555 1.33 LINK C GLU C 8 NE ORN C 9 1555 1555 1.38 LINK C ORN C 9 N ALA C 10 1555 1555 1.37 SITE 1 AC1 1 HOH B 205 SITE 1 AC2 1 MET A 15 CRYST1 67.746 67.746 67.746 90.00 90.00 90.00 P 4 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014761 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014761 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014761 0.00000 HETATM 1 N ORN A 1 31.828 20.964 8.920 1.00 21.80 N ANISOU 1 N ORN A 1 2412 3552 2320 -478 -416 17 N HETATM 2 CA ORN A 1 31.553 19.508 8.921 1.00 20.92 C ANISOU 2 CA ORN A 1 2282 3504 2161 -338 -299 102 C HETATM 3 CB ORN A 1 30.701 19.129 10.141 1.00 20.77 C ANISOU 3 CB ORN A 1 2227 3572 2094 -264 -309 36 C HETATM 4 CG ORN A 1 31.488 19.052 11.471 1.00 21.97 C ANISOU 4 CG ORN A 1 2224 3993 2128 -301 -339 62 C HETATM 5 CD ORN A 1 32.225 17.707 11.654 1.00 27.24 C ANISOU 5 CD ORN A 1 2771 4791 2787 -221 -279 285 C HETATM 6 NE ORN A 1 31.306 16.610 11.466 1.00 26.96 N ANISOU 6 NE ORN A 1 2777 4664 2804 -103 -212 353 N HETATM 7 C ORN A 1 30.803 19.104 7.640 1.00 20.07 C ANISOU 7 C ORN A 1 2308 3222 2096 -306 -251 128 C HETATM 8 O ORN A 1 30.061 19.889 7.048 1.00 20.61 O ANISOU 8 O ORN A 1 2487 3124 2219 -365 -335 82 O HETATM 9 H1 ORN A 1 32.184 21.309 8.024 1.00 26.16 H HETATM 10 H2 ORN A 1 31.000 21.532 9.118 1.00 26.16 H HETATM 11 H3 ORN A 1 32.522 21.246 9.616 1.00 26.16 H HETATM 12 HA ORN A 1 32.528 19.013 8.910 1.00 25.10 H HETATM 13 HB2 ORN A 1 30.254 18.141 9.967 1.00 24.93 H HETATM 14 HB3 ORN A 1 29.913 19.885 10.260 1.00 24.93 H HETATM 15 HG2 ORN A 1 32.222 19.866 11.493 1.00 26.36 H HETATM 16 HG3 ORN A 1 30.789 19.184 12.304 1.00 26.36 H HETATM 17 HD2 ORN A 1 32.624 17.660 12.671 1.00 32.69 H HETATM 18 HD3 ORN A 1 33.028 17.636 10.915 1.00 32.69 H HETATM 19 HE1 ORN A 1 30.625 16.475 12.210 1.00 32.35 H