HEADER HYDROLASE/HYDROLASE INHIBITOR 15-JUN-17 5W5J TITLE IDENTIFICATION OF POTENT AND SELECTIVE RIPK2 INHIBITORS FOR THE TITLE 2 TREATMENT OF INFLAMMATORY DISEASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CARD-CONTAINING INTERLEUKIN-1 BETA-CONVERTING ENZYME- COMPND 5 ASSOCIATED KINASE,CARD-CONTAINING IL-1 BETA ICE-KINASE,RIP-LIKE- COMPND 6 INTERACTING CLARP KINASE,RECEPTOR-INTERACTING PROTEIN 2,RIP-2, COMPND 7 TYROSINE-PROTEIN KINASE RIPK2; COMPND 8 EC: 2.7.10.2; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK2, CARDIAK, RICK, RIP2, UNQ277/PRO314/PRO34092; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS INHIBITOR, COMPLEX, KINASE, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KREUSCH,G.SPRAGGON REVDAT 4 03-APR-24 5W5J 1 REMARK REVDAT 3 13-MAR-24 5W5J 1 REMARK REVDAT 2 08-NOV-17 5W5J 1 JRNL REVDAT 1 25-OCT-17 5W5J 0 JRNL AUTH X.HE,S.DA ROS,J.NELSON,X.ZHU,T.JIANG,B.OKRAM,S.JIANG, JRNL AUTH 2 P.Y.MICHELLYS,M.ISKANDAR,S.ESPINOLA,Y.JIA,B.BURSULAYA, JRNL AUTH 3 A.KREUSCH,M.Y.GAO,G.SPRAGGON,J.BAATEN,L.CLEMMER,S.MEEUSEN, JRNL AUTH 4 D.HUANG,R.HILL,V.NGUYEN-TRAN,J.FATHMAN,B.LIU,T.TUNTLAND, JRNL AUTH 5 P.GORDON,T.HOLLENBECK,K.NG,J.SHI,L.BORDONE,H.LIU JRNL TITL IDENTIFICATION OF POTENT AND SELECTIVE RIPK2 INHIBITORS FOR JRNL TITL 2 THE TREATMENT OF INFLAMMATORY DISEASES. JRNL REF ACS MED CHEM LETT V. 8 1048 2017 JRNL REFN ISSN 1948-5875 JRNL PMID 29057049 JRNL DOI 10.1021/ACSMEDCHEMLETT.7B00258 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 812 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2951 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2333 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2803 REMARK 3 BIN R VALUE (WORKING SET) : 0.2276 REMARK 3 BIN FREE R VALUE : 0.3421 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.02 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 148 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3990 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.11060 REMARK 3 B22 (A**2) : -15.80790 REMARK 3 B33 (A**2) : 13.69730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.366 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 3.171 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.373 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.379 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.869 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4156 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5678 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1334 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 83 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 601 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4156 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 558 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4622 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.16 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.65 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.86 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0-5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16533 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: UNPUBLISHED IN-HOUSE STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 0.1M CITRIC REMARK 280 ACID PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.10650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.31500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.13200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.31500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.10650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.13200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 ILE A 6 REMARK 465 CYS A 7 REMARK 465 SER A 8 REMARK 465 LEU A 49 REMARK 465 HIS A 50 REMARK 465 ILE A 51 REMARK 465 HIS A 52 REMARK 465 THR A 53 REMARK 465 PRO A 54 REMARK 465 LEU A 55 REMARK 465 LEU A 56 REMARK 465 ASP A 57 REMARK 465 SER A 58 REMARK 465 GLU A 59 REMARK 465 ARG A 60 REMARK 465 LYS A 61 REMARK 465 ASP A 62 REMARK 465 VAL A 63 REMARK 465 LEU A 64 REMARK 465 ARG A 65 REMARK 465 GLU A 66 REMARK 465 ALA A 67 REMARK 465 GLU A 68 REMARK 465 GLU A 89 REMARK 465 GLY A 166 REMARK 465 LEU A 167 REMARK 465 SER A 168 REMARK 465 LYS A 169 REMARK 465 TRP A 170 REMARK 465 ARG A 171 REMARK 465 MET A 172 REMARK 465 MET A 173 REMARK 465 SER A 174 REMARK 465 LEU A 175 REMARK 465 SER A 176 REMARK 465 GLN A 177 REMARK 465 SER A 178 REMARK 465 ARG A 179 REMARK 465 SER A 180 REMARK 465 SER A 181 REMARK 465 LYS A 182 REMARK 465 SER A 183 REMARK 465 ALA A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 GLY A 188 REMARK 465 GLY A 201 REMARK 465 GLN A 202 REMARK 465 LYS A 203 REMARK 465 SER A 204 REMARK 465 ARG A 205 REMARK 465 ALA A 206 REMARK 465 SER A 207 REMARK 465 LYS A 311 REMARK 465 ASN B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 ALA B 5 REMARK 465 ILE B 6 REMARK 465 CYS B 7 REMARK 465 SER B 8 REMARK 465 ALA B 9 REMARK 465 GLY B 27 REMARK 465 ILE B 51 REMARK 465 HIS B 52 REMARK 465 THR B 53 REMARK 465 PRO B 54 REMARK 465 LEU B 55 REMARK 465 LEU B 56 REMARK 465 ASP B 57 REMARK 465 SER B 58 REMARK 465 GLU B 59 REMARK 465 ARG B 60 REMARK 465 LYS B 61 REMARK 465 LEU B 142 REMARK 465 LEU B 143 REMARK 465 GLY B 166 REMARK 465 LEU B 167 REMARK 465 SER B 168 REMARK 465 LYS B 169 REMARK 465 TRP B 170 REMARK 465 ARG B 171 REMARK 465 MET B 172 REMARK 465 MET B 173 REMARK 465 SER B 174 REMARK 465 LEU B 175 REMARK 465 SER B 176 REMARK 465 GLN B 177 REMARK 465 SER B 178 REMARK 465 ARG B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 LYS B 182 REMARK 465 SER B 183 REMARK 465 ALA B 184 REMARK 465 PRO B 185 REMARK 465 GLU B 186 REMARK 465 GLY B 187 REMARK 465 GLY B 188 REMARK 465 PRO B 200 REMARK 465 GLY B 201 REMARK 465 GLN B 202 REMARK 465 LYS B 203 REMARK 465 SER B 204 REMARK 465 ARG B 205 REMARK 465 ALA B 206 REMARK 465 SER B 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 10 CG CD1 CD2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 69 CG1 CG2 CD1 REMARK 470 LEU A 70 CG CD1 CD2 REMARK 470 HIS A 71 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 PHE A 90 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 91 CG CD1 CD2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 LEU A 142 CG CD1 CD2 REMARK 470 LEU A 143 CG CD1 CD2 REMARK 470 HIS A 144 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 145 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 21 CG CD1 CD2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 SER B 29 OG REMARK 470 HIS B 50 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 62 CG OD1 OD2 REMARK 470 LEU B 64 CG CD1 CD2 REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 ARG B 74 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 HIS B 144 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 193 CG SD CE REMARK 470 ILE B 208 CG1 CG2 CD1 REMARK 470 LYS B 209 CG CD CE NZ REMARK 470 HIS B 210 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 ASP B 231 CG OD1 OD2 REMARK 470 THR B 233 OG1 CG2 REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 LEU B 284 CG CD1 CD2 REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 LYS B 311 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 96.75 -60.65 REMARK 500 ARG A 26 103.90 -167.13 REMARK 500 ALA A 73 93.88 -69.42 REMARK 500 LEU A 142 69.45 -100.51 REMARK 500 HIS A 144 33.51 -76.29 REMARK 500 ALA A 163 58.24 -119.10 REMARK 500 ASP A 164 48.17 -81.72 REMARK 500 LYS A 209 35.31 -86.11 REMARK 500 LEU A 309 27.94 -79.54 REMARK 500 LEU B 21 85.75 -60.99 REMARK 500 ALA B 73 93.33 -68.40 REMARK 500 HIS B 145 -61.78 -106.07 REMARK 500 TYR B 198 -21.58 -144.37 REMARK 500 LYS B 209 34.10 -88.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9WS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9WS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W5W RELATED DB: PDB DBREF 5W5J A 2 311 UNP O43353 RIPK2_HUMAN 2 311 DBREF 5W5J B 2 311 UNP O43353 RIPK2_HUMAN 2 311 SEQRES 1 A 310 ASN GLY GLU ALA ILE CYS SER ALA LEU PRO THR ILE PRO SEQRES 2 A 310 TYR HIS LYS LEU ALA ASP LEU ARG TYR LEU SER ARG GLY SEQRES 3 A 310 ALA SER GLY THR VAL SER SER ALA ARG HIS ALA ASP TRP SEQRES 4 A 310 ARG VAL GLN VAL ALA VAL LYS HIS LEU HIS ILE HIS THR SEQRES 5 A 310 PRO LEU LEU ASP SER GLU ARG LYS ASP VAL LEU ARG GLU SEQRES 6 A 310 ALA GLU ILE LEU HIS LYS ALA ARG PHE SER TYR ILE LEU SEQRES 7 A 310 PRO ILE LEU GLY ILE CYS ASN GLU PRO GLU PHE LEU GLY SEQRES 8 A 310 ILE VAL THR GLU TYR MET PRO ASN GLY SER LEU ASN GLU SEQRES 9 A 310 LEU LEU HIS ARG LYS THR GLU TYR PRO ASP VAL ALA TRP SEQRES 10 A 310 PRO LEU ARG PHE ARG ILE LEU HIS GLU ILE ALA LEU GLY SEQRES 11 A 310 VAL ASN TYR LEU HIS ASN MET THR PRO PRO LEU LEU HIS SEQRES 12 A 310 HIS ASP LEU LYS THR GLN ASN ILE LEU LEU ASP ASN GLU SEQRES 13 A 310 PHE HIS VAL LYS ILE ALA ASP PHE GLY LEU SER LYS TRP SEQRES 14 A 310 ARG MET MET SER LEU SER GLN SER ARG SER SER LYS SER SEQRES 15 A 310 ALA PRO GLU GLY GLY THR ILE ILE TYR MET PRO PRO GLU SEQRES 16 A 310 ASN TYR GLU PRO GLY GLN LYS SER ARG ALA SER ILE LYS SEQRES 17 A 310 HIS ASP ILE TYR SER TYR ALA VAL ILE THR TRP GLU VAL SEQRES 18 A 310 LEU SER ARG LYS GLN PRO PHE GLU ASP VAL THR ASN PRO SEQRES 19 A 310 LEU GLN ILE MET TYR SER VAL SER GLN GLY HIS ARG PRO SEQRES 20 A 310 VAL ILE ASN GLU GLU SER LEU PRO TYR ASP ILE PRO HIS SEQRES 21 A 310 ARG ALA ARG MET ILE SER LEU ILE GLU SER GLY TRP ALA SEQRES 22 A 310 GLN ASN PRO ASP GLU ARG PRO SER PHE LEU LYS CYS LEU SEQRES 23 A 310 ILE GLU LEU GLU PRO VAL LEU ARG THR PHE GLU GLU ILE SEQRES 24 A 310 THR PHE LEU GLU ALA VAL ILE GLN LEU LYS LYS SEQRES 1 B 310 ASN GLY GLU ALA ILE CYS SER ALA LEU PRO THR ILE PRO SEQRES 2 B 310 TYR HIS LYS LEU ALA ASP LEU ARG TYR LEU SER ARG GLY SEQRES 3 B 310 ALA SER GLY THR VAL SER SER ALA ARG HIS ALA ASP TRP SEQRES 4 B 310 ARG VAL GLN VAL ALA VAL LYS HIS LEU HIS ILE HIS THR SEQRES 5 B 310 PRO LEU LEU ASP SER GLU ARG LYS ASP VAL LEU ARG GLU SEQRES 6 B 310 ALA GLU ILE LEU HIS LYS ALA ARG PHE SER TYR ILE LEU SEQRES 7 B 310 PRO ILE LEU GLY ILE CYS ASN GLU PRO GLU PHE LEU GLY SEQRES 8 B 310 ILE VAL THR GLU TYR MET PRO ASN GLY SER LEU ASN GLU SEQRES 9 B 310 LEU LEU HIS ARG LYS THR GLU TYR PRO ASP VAL ALA TRP SEQRES 10 B 310 PRO LEU ARG PHE ARG ILE LEU HIS GLU ILE ALA LEU GLY SEQRES 11 B 310 VAL ASN TYR LEU HIS ASN MET THR PRO PRO LEU LEU HIS SEQRES 12 B 310 HIS ASP LEU LYS THR GLN ASN ILE LEU LEU ASP ASN GLU SEQRES 13 B 310 PHE HIS VAL LYS ILE ALA ASP PHE GLY LEU SER LYS TRP SEQRES 14 B 310 ARG MET MET SER LEU SER GLN SER ARG SER SER LYS SER SEQRES 15 B 310 ALA PRO GLU GLY GLY THR ILE ILE TYR MET PRO PRO GLU SEQRES 16 B 310 ASN TYR GLU PRO GLY GLN LYS SER ARG ALA SER ILE LYS SEQRES 17 B 310 HIS ASP ILE TYR SER TYR ALA VAL ILE THR TRP GLU VAL SEQRES 18 B 310 LEU SER ARG LYS GLN PRO PHE GLU ASP VAL THR ASN PRO SEQRES 19 B 310 LEU GLN ILE MET TYR SER VAL SER GLN GLY HIS ARG PRO SEQRES 20 B 310 VAL ILE ASN GLU GLU SER LEU PRO TYR ASP ILE PRO HIS SEQRES 21 B 310 ARG ALA ARG MET ILE SER LEU ILE GLU SER GLY TRP ALA SEQRES 22 B 310 GLN ASN PRO ASP GLU ARG PRO SER PHE LEU LYS CYS LEU SEQRES 23 B 310 ILE GLU LEU GLU PRO VAL LEU ARG THR PHE GLU GLU ILE SEQRES 24 B 310 THR PHE LEU GLU ALA VAL ILE GLN LEU LYS LYS HET 9WS A 401 19 HET SO4 A 402 5 HET SO4 A 403 5 HET 9WS B 401 19 HET SO4 B 402 5 HETNAM 9WS N-(2-CHLOROPHENYL)PYRAZOLO[1,5-A]PYRIDINE-3-CARBOXAMIDE HETNAM SO4 SULFATE ION FORMUL 3 9WS 2(C14 H10 CL N3 O) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *25(H2 O) HELIX 1 AA1 PRO A 14 HIS A 16 5 3 HELIX 2 AA2 SER A 102 ARG A 109 1 8 HELIX 3 AA3 ALA A 117 MET A 138 1 22 HELIX 4 AA4 THR A 189 MET A 193 5 5 HELIX 5 AA5 PRO A 194 TYR A 198 5 5 HELIX 6 AA6 LYS A 209 ARG A 225 1 17 HELIX 7 AA7 ASN A 234 GLN A 244 1 11 HELIX 8 AA8 HIS A 261 TRP A 273 1 13 HELIX 9 AA9 ASN A 276 ARG A 280 5 5 HELIX 10 AB1 SER A 282 THR A 296 1 15 HELIX 11 AB2 GLU A 298 LEU A 309 1 12 HELIX 12 AB3 PRO B 14 HIS B 16 5 3 HELIX 13 AB4 VAL B 63 ALA B 73 1 11 HELIX 14 AB5 SER B 102 ARG B 109 1 8 HELIX 15 AB6 ALA B 117 MET B 138 1 22 HELIX 16 AB7 THR B 189 MET B 193 5 5 HELIX 17 AB8 PRO B 194 TYR B 198 5 5 HELIX 18 AB9 LYS B 209 ARG B 225 1 17 HELIX 19 AC1 ASN B 234 GLN B 244 1 11 HELIX 20 AC2 HIS B 261 TRP B 273 1 13 HELIX 21 AC3 ASN B 276 ARG B 280 5 5 HELIX 22 AC4 SER B 282 THR B 296 1 15 HELIX 23 AC5 GLU B 298 GLN B 308 1 11 SHEET 1 AA1 5 LEU A 18 SER A 25 0 SHEET 2 AA1 5 VAL A 32 HIS A 37 -1 O ARG A 36 N ALA A 19 SHEET 3 AA1 5 VAL A 42 LYS A 47 -1 O VAL A 44 N ALA A 35 SHEET 4 AA1 5 ILE A 93 GLU A 96 -1 O THR A 95 N ALA A 45 SHEET 5 AA1 5 ILE A 81 ILE A 84 -1 N GLY A 83 O VAL A 94 SHEET 1 AA2 2 ILE A 152 LEU A 154 0 SHEET 2 AA2 2 VAL A 160 ILE A 162 -1 O LYS A 161 N LEU A 153 SHEET 1 AA3 5 LEU B 18 SER B 25 0 SHEET 2 AA3 5 VAL B 32 HIS B 37 -1 O SER B 34 N ARG B 22 SHEET 3 AA3 5 GLN B 43 HIS B 48 -1 O VAL B 44 N ALA B 35 SHEET 4 AA3 5 LEU B 91 GLU B 96 -1 O THR B 95 N ALA B 45 SHEET 5 AA3 5 ILE B 81 ASN B 86 -1 N CYS B 85 O GLY B 92 SHEET 1 AA4 2 ILE B 152 LEU B 154 0 SHEET 2 AA4 2 VAL B 160 ILE B 162 -1 O LYS B 161 N LEU B 153 CISPEP 1 ARG A 26 GLY A 27 0 6.60 CISPEP 2 THR A 139 PRO A 140 0 1.49 CISPEP 3 LEU B 10 PRO B 11 0 1.68 CISPEP 4 THR B 139 PRO B 140 0 1.18 SITE 1 AC1 9 ALA A 45 VAL A 46 LYS A 47 LEU A 79 SITE 2 AC1 9 ILE A 93 THR A 95 GLU A 96 MET A 98 SITE 3 AC1 9 LEU A 153 SITE 1 AC2 3 LYS A 110 PRO A 114 ARG A 225 SITE 1 AC3 3 HIS A 136 SER A 282 PHE A 283 SITE 1 AC4 11 LEU B 24 VAL B 32 ALA B 45 VAL B 46 SITE 2 AC4 11 LYS B 47 LEU B 79 ILE B 93 THR B 95 SITE 3 AC4 11 GLU B 96 MET B 98 LEU B 153 SITE 1 AC5 3 HIS B 136 SER B 282 PHE B 283 CRYST1 58.213 92.264 126.630 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017178 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007897 0.00000