HEADER VIRAL PROTEIN 15-JUN-17 5W5S TITLE CRYSTAL STRUCTURE OF THE A/PUERTO RICO/8/1934 (H1N1) INFLUENZA VIRUS TITLE 2 HEMAGGLUTININ IN COMPLEX WITH CYCLIC PEPTIDE CP141019 (P5) CAVEAT 5W5S NAG E 1 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 18-343; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMAGGLUTININ; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 344-519; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ACE-PH8-ORN-LEU-GLU-TYR-ZCL-GLU-TRP-LEU-SER-BAL; COMPND 13 CHAIN: D; COMPND 14 SYNONYM: CYCLIC PEPTIDE CP141019 (P5); COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/1934 SOURCE 3 H1N1); SOURCE 4 ORGANISM_TAXID: 211044; SOURCE 5 STRAIN: A/PUERTO RICO/8/1934 H1N1; SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/1934 SOURCE 11 H1N1); SOURCE 12 ORGANISM_TAXID: 211044; SOURCE 13 STRAIN: A/PUERTO RICO/8/1934 H1N1; SOURCE 14 GENE: HA; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630 KEYWDS GLYCOPROTEIN, ECTODOMAIN, N-GLYCOSYLATION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.A.WILSON,R.U.KADAM REVDAT 9 15-NOV-23 5W5S 1 REMARK REVDAT 8 04-OCT-23 5W5S 1 HETSYN REVDAT 7 29-JUL-20 5W5S 1 CAVEAT COMPND REMARK HETNAM REVDAT 7 2 1 LINK SITE ATOM REVDAT 6 04-MAR-20 5W5S 1 REMARK REVDAT 5 11-DEC-19 5W5S 1 REMARK REVDAT 4 06-DEC-17 5W5S 1 REMARK REVDAT 3 08-NOV-17 5W5S 1 JRNL REVDAT 2 25-OCT-17 5W5S 1 JRNL REVDAT 1 04-OCT-17 5W5S 0 JRNL AUTH R.U.KADAM,J.JURASZEK,B.BRANDENBURG,C.BUYCK,W.B.G.SCHEPENS, JRNL AUTH 2 B.KESTELEYN,B.STOOPS,R.J.VREEKEN,J.VERMOND,W.GOUTIER,C.TANG, JRNL AUTH 3 R.VOGELS,R.H.E.FRIESEN,J.GOUDSMIT,M.J.P.VAN DONGEN, JRNL AUTH 4 I.A.WILSON JRNL TITL POTENT PEPTIDIC FUSION INHIBITORS OF INFLUENZA VIRUS. JRNL REF SCIENCE V. 358 496 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 28971971 JRNL DOI 10.1126/SCIENCE.AAN0516 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5439 - 5.2256 0.97 2612 145 0.1535 0.1725 REMARK 3 2 5.2256 - 4.1488 1.00 2598 148 0.1366 0.1751 REMARK 3 3 4.1488 - 3.6246 1.00 2605 133 0.1730 0.2008 REMARK 3 4 3.6246 - 3.2934 1.00 2575 151 0.2014 0.2732 REMARK 3 5 3.2934 - 3.0574 1.00 2606 126 0.2252 0.2500 REMARK 3 6 3.0574 - 2.8771 1.00 2543 142 0.2372 0.2970 REMARK 3 7 2.8771 - 2.7331 1.00 2568 142 0.2400 0.2908 REMARK 3 8 2.7331 - 2.6141 1.00 2564 143 0.2463 0.3183 REMARK 3 9 2.6141 - 2.5135 1.00 2595 119 0.2475 0.2821 REMARK 3 10 2.5135 - 2.4268 1.00 2547 128 0.2551 0.2930 REMARK 3 11 2.4268 - 2.3509 1.00 2540 124 0.2694 0.3252 REMARK 3 12 2.3509 - 2.2837 0.99 2563 147 0.2761 0.3100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4261 REMARK 3 ANGLE : 1.065 5778 REMARK 3 CHIRALITY : 0.091 629 REMARK 3 PLANARITY : 0.011 747 REMARK 3 DIHEDRAL : 12.728 1649 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M LITHIUM CHLORIDE 10% W/V PEG 6000 REMARK 280 0.1M SODIUM CITRATE, PH= 5.0, PH 5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.44850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.44850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.44850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.44850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 81.44850 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 81.44850 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 81.44850 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 81.44850 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 81.44850 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 81.44850 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 81.44850 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 81.44850 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 81.44850 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 81.44850 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 81.44850 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.44850 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 81.44850 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 81.44850 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 81.44850 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 81.44850 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 81.44850 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 81.44850 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 81.44850 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 81.44850 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 81.44850 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 328 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 358 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 326 REMARK 465 GLN A 327 REMARK 465 SER A 328 REMARK 465 ARG A 329 REMARK 465 LYS B 172 REMARK 465 VAL B 173 REMARK 465 ASP B 174 REMARK 465 GLY B 175 REMARK 465 VAL B 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 271 O5 NAG A 406 2.15 REMARK 500 OE1 GLU A 31 O HOH A 501 2.15 REMARK 500 NE ORN D 3 O BAL D 12 2.18 REMARK 500 O3 NAG F 1 O5 NAG F 2 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 550 O HOH A 566 5555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU D 4 CA LEU D 4 C -0.156 REMARK 500 TYR D 6 CB TYR D 6 CG -0.126 REMARK 500 GLU D 8 CA GLU D 8 C -0.166 REMARK 500 TRP D 9 CG TRP D 9 CD2 -0.135 REMARK 500 TRP D 9 CE2 TRP D 9 CD2 -0.100 REMARK 500 LEU D 10 CA LEU D 10 C -0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 BAL D 12 C - N - CA ANGL. DEV. = 28.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 125C -20.74 167.88 REMARK 500 CYS A 139 60.30 -112.13 REMARK 500 GLN A 196 3.92 58.96 REMARK 500 ASN A 199 59.24 -102.23 REMARK 500 ASN A 250 -0.41 70.10 REMARK 500 ALA B 5 -69.36 -90.00 REMARK 500 LYS B 127 -133.98 55.96 REMARK 500 LEU D 10 156.46 -48.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W6U RELATED DB: PDB REMARK 900 RELATED ID: 5W6T RELATED DB: PDB REMARK 900 RELATED ID: 5W6R RELATED DB: PDB REMARK 900 RELATED ID: 5W6I RELATED DB: PDB REMARK 900 RELATED ID: 5W5U RELATED DB: PDB DBREF 5W5S A 11 329 UNP P03452 HEMA_I34A1 18 343 DBREF 5W5S B 1 176 UNP P03452 HEMA_I34A1 344 519 DBREF 5W5S D 1 12 PDB 5W5S 5W5S 1 12 SEQRES 1 A 326 ASP THR ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 2 A 326 ASP THR VAL ASP THR VAL LEU GLU LYS ASN VAL THR VAL SEQRES 3 A 326 THR HIS SER VAL ASN LEU LEU GLU ASP SER HIS ASN GLY SEQRES 4 A 326 LYS LEU CYS ARG LEU LYS GLY ILE ALA PRO LEU GLN LEU SEQRES 5 A 326 GLY LYS CYS ASN ILE ALA GLY TRP LEU LEU GLY ASN PRO SEQRES 6 A 326 GLU CYS ASP PRO LEU LEU PRO VAL ARG SER TRP SER TYR SEQRES 7 A 326 ILE VAL GLU THR PRO ASN SER GLU ASN GLY ILE CYS TYR SEQRES 8 A 326 PRO GLY ASP PHE ILE ASP TYR GLU GLU LEU ARG GLU GLN SEQRES 9 A 326 LEU SER SER VAL SER SER PHE GLU ARG PHE GLU ILE PHE SEQRES 10 A 326 PRO LYS GLU SER SER TRP PRO ASN HIS ASN THR ASN GLY SEQRES 11 A 326 VAL THR ALA ALA CYS SER HIS GLU GLY LYS SER SER PHE SEQRES 12 A 326 TYR ARG ASN LEU LEU TRP LEU THR GLU LYS GLU GLY SER SEQRES 13 A 326 TYR PRO LYS LEU LYS ASN SER TYR VAL ASN LYS LYS GLY SEQRES 14 A 326 LYS GLU VAL LEU VAL LEU TRP GLY ILE HIS HIS PRO PRO SEQRES 15 A 326 ASN SER LYS GLU GLN GLN ASN LEU TYR GLN ASN GLU ASN SEQRES 16 A 326 ALA TYR VAL SER VAL VAL THR SER ASN TYR ASN ARG ARG SEQRES 17 A 326 PHE THR PRO GLU ILE ALA GLU ARG PRO LYS VAL ARG ASP SEQRES 18 A 326 GLN ALA GLY ARG MET ASN TYR TYR TRP THR LEU LEU LYS SEQRES 19 A 326 PRO GLY ASP THR ILE ILE PHE GLU ALA ASN GLY ASN LEU SEQRES 20 A 326 ILE ALA PRO MET TYR ALA PHE ALA LEU SER ARG GLY PHE SEQRES 21 A 326 GLY SER GLY ILE ILE THR SER ASN ALA SER MET HIS GLU SEQRES 22 A 326 CYS ASN THR LYS CYS GLN THR PRO LEU GLY ALA ILE ASN SEQRES 23 A 326 SER SER LEU PRO TYR GLN ASN ILE HIS PRO VAL THR ILE SEQRES 24 A 326 GLY GLU CYS PRO LYS TYR VAL ARG SER ALA LYS LEU ARG SEQRES 25 A 326 MET VAL THR GLY LEU ARG ASN ILE PRO SER ILE GLN SER SEQRES 26 A 326 ARG SEQRES 1 B 176 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 176 TRP THR GLY MET ILE ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 176 GLN ASN GLU GLN GLY SER GLY TYR ALA ALA ASP GLN LYS SEQRES 4 B 176 SER THR GLN ASN ALA ILE ASN GLY ILE THR ASN LYS VAL SEQRES 5 B 176 ASN THR VAL ILE GLU LYS MET ASN ILE GLN PHE THR ALA SEQRES 6 B 176 VAL GLY LYS GLU PHE ASN LYS LEU GLU LYS ARG MET GLU SEQRES 7 B 176 ASN LEU ASN LYS LYS VAL ASP ASP GLY PHE LEU ASP ILE SEQRES 8 B 176 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU LEU GLU ASN SEQRES 9 B 176 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 176 LEU TYR GLU LYS VAL LYS SER GLN LEU LYS ASN ASN ALA SEQRES 11 B 176 LYS GLU ILE GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 176 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 B 176 TYR ASP TYR PRO LYS TYR SER GLU GLU SER LYS LEU ASN SEQRES 14 B 176 ARG GLU LYS VAL ASP GLY VAL SEQRES 1 D 12 ACE PH8 ORN LEU GLU TYR ZCL GLU TRP LEU SER BAL HET ACE D 1 3 HET PH8 D 2 13 HET ORN D 3 8 HET ZCL D 7 13 HET BAL D 12 5 HET NAG C 1 14 HET NAG C 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG A 401 14 HET NAG A 406 14 HET CL A 407 1 HET CL A 408 1 HET CL B 203 1 HETNAM ACE ACETYL GROUP HETNAM PH8 5-PHENYL-L-NORVALINE HETNAM ORN L-ORNITHINE HETNAM ZCL 3,4-DICHLORO-L-PHENYLALANINE HETNAM BAL BETA-ALANINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 ACE C2 H4 O FORMUL 3 PH8 C11 H15 N O2 FORMUL 3 ORN C5 H12 N2 O2 FORMUL 3 ZCL C9 H9 CL2 N O2 FORMUL 3 BAL C3 H7 N O2 FORMUL 4 NAG 8(C8 H15 N O6) FORMUL 9 CL 3(CL 1-) FORMUL 12 HOH *184(H2 O) HELIX 1 AA1 ASN A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 104 SER A 113 1 10 HELIX 3 AA3 PRO A 125 TRP A 127 1 6 HELIX 4 AA4 ASN A 187 GLN A 196 1 10 HELIX 5 AA5 ASP B 37 MET B 59 1 23 HELIX 6 AA6 GLU B 74 LYS B 127 1 54 HELIX 7 AA7 ASP B 145 ASN B 154 1 10 HELIX 8 AA8 ASP B 158 GLU B 171 1 14 SHEET 1 AA1 5 GLY B 31 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 ASN B 28 -1 N ASN B 28 O GLY B 31 SHEET 3 AA1 5 THR A 12 TYR A 17 -1 N CYS A 14 O HIS B 25 SHEET 4 AA1 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 13 SHEET 5 AA1 5 ALA B 130 GLU B 132 -1 N LYS B 131 O GLU B 139 SHEET 1 AA2 2 ASP A 24 VAL A 26 0 SHEET 2 AA2 2 VAL A 34 VAL A 36 -1 O VAL A 34 N VAL A 26 SHEET 1 AA3 2 SER A 39 ASN A 41 0 SHEET 2 AA3 2 ARG A 315 VAL A 317 -1 O MET A 316 N VAL A 40 SHEET 1 AA4 3 LEU A 43 GLU A 44 0 SHEET 2 AA4 3 TYR A 294 GLN A 295 1 O TYR A 294 N GLU A 44 SHEET 3 AA4 3 LYS A 307 TYR A 308 1 O LYS A 307 N GLN A 295 SHEET 1 AA5 2 LEU A 51 LEU A 54 0 SHEET 2 AA5 2 MET A 274 THR A 279 1 O CYS A 277 N ARG A 53 SHEET 1 AA6 3 LEU A 59 GLN A 60 0 SHEET 2 AA6 3 ILE A 87 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 ILE A 267 THR A 269 1 O ILE A 268 N ILE A 87 SHEET 1 AA7 6 VAL A 82 SER A 83A 0 SHEET 2 AA7 6 VAL A 115 GLU A 122 -1 O PHE A 118 N ARG A 83 SHEET 3 AA7 6 TYR A 256 ARG A 262 -1 O ALA A 257 N PHE A 121 SHEET 4 AA7 6 GLU A 175 HIS A 184 -1 N GLU A 175 O LEU A 260 SHEET 5 AA7 6 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 6 AA7 6 LEU A 151 TRP A 153 -1 N LEU A 152 O ALA A 253 SHEET 1 AA8 5 VAL A 82 SER A 83A 0 SHEET 2 AA8 5 VAL A 115 GLU A 122 -1 O PHE A 118 N ARG A 83 SHEET 3 AA8 5 TYR A 256 ARG A 262 -1 O ALA A 257 N PHE A 121 SHEET 4 AA8 5 GLU A 175 HIS A 184 -1 N GLU A 175 O LEU A 260 SHEET 5 AA8 5 ARG A 229 LEU A 237 -1 O LEU A 237 N VAL A 176 SHEET 1 AA9 2 THR A 136 HIS A 141 0 SHEET 2 AA9 2 LYS A 144 SER A 146 -1 O LYS A 144 N HIS A 141 SHEET 1 AB1 4 LEU A 164 VAL A 169 0 SHEET 2 AB1 4 THR A 242 ALA A 247 -1 O PHE A 245 N ASN A 166 SHEET 3 AB1 4 VAL A 202 VAL A 205 -1 N SER A 203 O GLU A 246 SHEET 4 AB1 4 ASN A 210 PHE A 213 -1 O PHE A 213 N VAL A 202 SHEET 1 AB2 3 GLY A 286 ALA A 287 0 SHEET 2 AB2 3 CYS A 281 THR A 283 -1 N THR A 283 O GLY A 286 SHEET 3 AB2 3 ILE A 302 GLY A 303 -1 O ILE A 302 N GLN A 282 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.04 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.02 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.04 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.02 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.04 LINK ND2 ASN A 21 C1 NAG E 1 1555 1555 1.42 LINK ND2 ASN A 33 C1 NAG C 1 1555 1555 1.41 LINK ND2 ASN A 271 C1 NAG A 406 1555 1555 1.43 LINK ND2 ASN A 289 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN B 154 C1 NAG F 1 1555 1555 1.45 LINK C ACE D 1 N PH8 D 2 1555 1555 1.29 LINK C PH8 D 2 N ORN D 3 1555 1555 1.34 LINK C ORN D 3 N LEU D 4 1555 1555 1.35 LINK NE ORN D 3 C BAL D 12 1555 1555 1.37 LINK C TYR D 6 N ZCL D 7 1555 1555 1.37 LINK C ZCL D 7 N GLU D 8 1555 1555 1.37 LINK C SER D 11 N BAL D 12 1555 1555 1.39 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.51 CRYST1 162.897 162.897 162.897 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006139 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006139 0.00000