HEADER LIGASE 16-JUN-17 5W6M TITLE CRYSTAL STRUCTURE OF THE HUMAN HISTIDYL-TRNA SYNTHETASE MUTANT D175E COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE--TRNA LIGASE, CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 54-503; COMPND 5 SYNONYM: HISTIDYL-TRNA SYNTHETASE,HISRS; COMPND 6 EC: 6.1.1.21; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HARS, HRS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRNA-SYNTHETASE, CMT MUTANT, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BLOCQUEL,X.L.YANG REVDAT 3 04-OCT-23 5W6M 1 REMARK REVDAT 2 25-SEP-19 5W6M 1 JRNL REVDAT 1 20-JUN-18 5W6M 0 JRNL AUTH D.BLOCQUEL,L.SUN,Z.MATUSZEK,S.LI,T.WEBER,B.KUHLE,G.KOOI, JRNL AUTH 2 N.WEI,J.BAETS,T.PAN,P.SCHIMMEL,X.L.YANG JRNL TITL CMT DISEASE SEVERITY CORRELATES WITH MUTATION-INDUCED OPEN JRNL TITL 2 CONFORMATION OF HISTIDYL-TRNA SYNTHETASE, NOT AMINOACYLATION JRNL TITL 3 LOSS, IN PATIENT CELLS. JRNL REF PROC.NATL.ACAD.SCI.USA 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31501329 JRNL DOI 10.1073/PNAS.1908288116 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12679 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.311 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5934 - 6.3128 1.00 2565 136 0.2486 0.2945 REMARK 3 2 6.3128 - 5.0141 1.00 2433 128 0.2691 0.3321 REMARK 3 3 5.0141 - 4.3813 1.00 2369 124 0.2130 0.2859 REMARK 3 4 4.3813 - 3.9812 0.99 2350 124 0.2519 0.3073 REMARK 3 5 3.9812 - 3.6961 0.99 2327 123 0.2868 0.3987 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.590 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 134.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 152.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6348 REMARK 3 ANGLE : 0.685 8532 REMARK 3 CHIRALITY : 0.046 972 REMARK 3 PLANARITY : 0.004 1088 REMARK 3 DIHEDRAL : 13.570 3906 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 219.3392 -30.4774 262.3778 REMARK 3 T TENSOR REMARK 3 T11: 1.4955 T22: 1.4748 REMARK 3 T33: 1.3841 T12: -0.2943 REMARK 3 T13: 0.0258 T23: -0.0687 REMARK 3 L TENSOR REMARK 3 L11: 1.2928 L22: 1.0211 REMARK 3 L33: -0.0658 L12: -1.1190 REMARK 3 L13: -1.2883 L23: -0.8009 REMARK 3 S TENSOR REMARK 3 S11: -0.2455 S12: 0.0298 S13: 0.2980 REMARK 3 S21: -0.1057 S22: 0.1409 S23: -0.2890 REMARK 3 S31: -0.2926 S32: 0.2815 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 222.9320 -49.8198 272.2921 REMARK 3 T TENSOR REMARK 3 T11: 1.4223 T22: 1.5159 REMARK 3 T33: 1.3788 T12: 0.0311 REMARK 3 T13: -0.0816 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 0.7629 L22: 0.7277 REMARK 3 L33: 1.2241 L12: -0.7978 REMARK 3 L13: -0.7023 L23: 0.1029 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: -0.2444 S13: -0.0669 REMARK 3 S21: 0.0799 S22: 0.2055 S23: -0.1088 REMARK 3 S31: 0.3713 S32: 0.7731 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 503 ) REMARK 3 ORIGIN FOR THE GROUP (A): 188.3638 -35.5287 232.5088 REMARK 3 T TENSOR REMARK 3 T11: 1.6535 T22: 1.3835 REMARK 3 T33: 1.4583 T12: 0.0818 REMARK 3 T13: -0.0536 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.5943 L22: 1.0841 REMARK 3 L33: 0.9419 L12: 0.3942 REMARK 3 L13: 0.0033 L23: 0.2890 REMARK 3 S TENSOR REMARK 3 S11: 0.2684 S12: -0.2526 S13: -0.4384 REMARK 3 S21: -0.7229 S22: -0.2166 S23: 0.5912 REMARK 3 S31: -0.1027 S32: -0.2585 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 212.7005 -21.2894 252.2429 REMARK 3 T TENSOR REMARK 3 T11: 1.6711 T22: 1.5053 REMARK 3 T33: 1.5459 T12: -0.1322 REMARK 3 T13: 0.0455 T23: 0.1064 REMARK 3 L TENSOR REMARK 3 L11: -0.1807 L22: -2.3458 REMARK 3 L33: -0.1447 L12: 0.7722 REMARK 3 L13: 1.2607 L23: 0.5148 REMARK 3 S TENSOR REMARK 3 S11: -0.1255 S12: -0.1337 S13: 0.0173 REMARK 3 S21: -0.4831 S22: -0.2666 S23: 0.1335 REMARK 3 S31: -0.3666 S32: 0.2954 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 186 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 194.1185 -13.0229 239.5965 REMARK 3 T TENSOR REMARK 3 T11: 1.8084 T22: 1.2186 REMARK 3 T33: 1.6542 T12: 0.1620 REMARK 3 T13: -0.1384 T23: -0.1188 REMARK 3 L TENSOR REMARK 3 L11: 0.2551 L22: -0.1140 REMARK 3 L33: 0.1350 L12: 0.0435 REMARK 3 L13: 0.3486 L23: -0.1979 REMARK 3 S TENSOR REMARK 3 S11: -0.2276 S12: -0.6835 S13: 0.1371 REMARK 3 S21: 0.3743 S22: 0.4815 S23: 0.7345 REMARK 3 S31: -0.4563 S32: -0.2059 S33: 0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 313 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 203.3818 -11.5415 240.9552 REMARK 3 T TENSOR REMARK 3 T11: 2.3076 T22: 1.2100 REMARK 3 T33: 1.6264 T12: -0.0976 REMARK 3 T13: -0.0715 T23: 0.2533 REMARK 3 L TENSOR REMARK 3 L11: 0.5428 L22: 0.3059 REMARK 3 L33: 0.6094 L12: 0.7346 REMARK 3 L13: 0.7402 L23: 0.5496 REMARK 3 S TENSOR REMARK 3 S11: 0.8024 S12: 0.2767 S13: 0.9707 REMARK 3 S21: -0.4495 S22: -0.1361 S23: -1.0034 REMARK 3 S31: -2.4230 S32: 0.5297 S33: 0.0008 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 380 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): 196.4088 -22.0072 265.0430 REMARK 3 T TENSOR REMARK 3 T11: 1.5861 T22: 1.3692 REMARK 3 T33: 1.6491 T12: 0.1923 REMARK 3 T13: 0.0444 T23: -0.2799 REMARK 3 L TENSOR REMARK 3 L11: 0.7285 L22: 0.1409 REMARK 3 L33: 0.3417 L12: -0.4054 REMARK 3 L13: 0.4249 L23: -0.3696 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: -0.5370 S13: 0.5007 REMARK 3 S21: -0.0715 S22: 0.1124 S23: 0.5502 REMARK 3 S31: -0.1299 S32: -0.2747 S33: 0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 411 THROUGH 502 ) REMARK 3 ORIGIN FOR THE GROUP (A): 193.0303 -48.0526 281.2942 REMARK 3 T TENSOR REMARK 3 T11: 1.3139 T22: 1.4289 REMARK 3 T33: 1.4252 T12: 0.0075 REMARK 3 T13: 0.0173 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 1.9758 L22: 1.3128 REMARK 3 L33: 0.5937 L12: 0.8512 REMARK 3 L13: -0.7600 L23: -0.7168 REMARK 3 S TENSOR REMARK 3 S11: -0.1878 S12: -0.2872 S13: -0.4549 REMARK 3 S21: -0.1847 S22: 0.0154 S23: 0.3870 REMARK 3 S31: 0.0639 S32: -0.2882 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228516. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12712 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.696 REMARK 200 RESOLUTION RANGE LOW (A) : 38.591 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.58 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.61 REMARK 200 R MERGE FOR SHELL (I) : 0.81700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.710 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G84 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8, 0.2 M MGCL2 AND 20% REMARK 280 PEG 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.14500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.68000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.57250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.68000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 190.71750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.68000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.68000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.57250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.68000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.68000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 190.71750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 127.14500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 107 REMARK 465 GLY A 108 REMARK 465 GLU A 109 REMARK 465 ASP A 110 REMARK 465 GLN A 342 REMARK 465 THR A 343 REMARK 465 PRO A 344 REMARK 465 ALA A 345 REMARK 465 GLN A 346 REMARK 465 ALA A 347 REMARK 465 GLY A 348 REMARK 465 GLU A 349 REMARK 465 GLU A 350 REMARK 465 PRO A 351 REMARK 465 LEU A 352 REMARK 465 GLY A 353 REMARK 465 LYS B 106 REMARK 465 TYR B 107 REMARK 465 GLY B 108 REMARK 465 GLU B 109 REMARK 465 ASN B 160 REMARK 465 PRO B 161 REMARK 465 ALA B 162 REMARK 465 MET B 163 REMARK 465 THR B 164 REMARK 465 ARG B 165 REMARK 465 GLY B 166 REMARK 465 ARG B 167 REMARK 465 GLY B 219 REMARK 465 MET B 220 REMARK 465 PHE B 221 REMARK 465 ALA B 222 REMARK 465 ILE B 223 REMARK 465 CYS B 224 REMARK 465 GLY B 225 REMARK 465 VAL B 226 REMARK 465 SER B 227 REMARK 465 ASP B 228 REMARK 465 SER B 229 REMARK 465 LYS B 230 REMARK 465 PHE B 231 REMARK 465 ARG B 232 REMARK 465 THR B 233 REMARK 465 ILE B 234 REMARK 465 CYS B 235 REMARK 465 SER B 236 REMARK 465 SER B 237 REMARK 465 VAL B 238 REMARK 465 ASP B 239 REMARK 465 LYS B 240 REMARK 465 LEU B 241 REMARK 465 ASP B 242 REMARK 465 LYS B 243 REMARK 465 VAL B 244 REMARK 465 SER B 245 REMARK 465 TRP B 246 REMARK 465 GLU B 247 REMARK 465 GLU B 248 REMARK 465 VAL B 249 REMARK 465 LYS B 250 REMARK 465 ASN B 251 REMARK 465 GLU B 252 REMARK 465 MET B 253 REMARK 465 VAL B 254 REMARK 465 GLY B 255 REMARK 465 GLU B 256 REMARK 465 LYS B 257 REMARK 465 GLY B 258 REMARK 465 LEU B 259 REMARK 465 ALA B 260 REMARK 465 PRO B 261 REMARK 465 GLU B 262 REMARK 465 VAL B 263 REMARK 465 ALA B 264 REMARK 465 ASP B 265 REMARK 465 ARG B 266 REMARK 465 ILE B 267 REMARK 465 GLY B 268 REMARK 465 ASP B 269 REMARK 465 TYR B 270 REMARK 465 VAL B 271 REMARK 465 GLN B 272 REMARK 465 GLN B 273 REMARK 465 HIS B 274 REMARK 465 GLY B 275 REMARK 465 GLY B 276 REMARK 465 VAL B 277 REMARK 465 SER B 278 REMARK 465 LEU B 279 REMARK 465 VAL B 280 REMARK 465 GLU B 281 REMARK 465 GLN B 282 REMARK 465 LEU B 283 REMARK 465 LEU B 284 REMARK 465 GLN B 285 REMARK 465 ASP B 286 REMARK 465 PRO B 287 REMARK 465 LYS B 288 REMARK 465 LEU B 289 REMARK 465 SER B 290 REMARK 465 GLN B 291 REMARK 465 ASN B 292 REMARK 465 LYS B 293 REMARK 465 THR B 343 REMARK 465 PRO B 344 REMARK 465 ALA B 345 REMARK 465 GLN B 346 REMARK 465 ALA B 347 REMARK 465 GLY B 348 REMARK 465 GLU B 349 REMARK 465 GLU B 350 REMARK 465 PRO B 351 REMARK 465 LEU B 352 REMARK 465 GLY B 353 REMARK 465 VAL B 354 REMARK 465 GLY B 503 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 60 104.46 -45.03 REMARK 500 LYS A 100 -62.15 -13.93 REMARK 500 LEU A 113 48.25 -99.83 REMARK 500 ASP A 119 -82.45 -64.72 REMARK 500 GLU A 123 -145.31 -95.43 REMARK 500 ASN A 146 118.13 -165.87 REMARK 500 ARG A 165 -107.01 -112.66 REMARK 500 PRO A 184 -90.06 -46.04 REMARK 500 LEU A 217 -81.80 -62.50 REMARK 500 MET A 253 -71.08 -56.08 REMARK 500 TYR A 270 -62.84 -91.09 REMARK 500 GLN A 272 6.42 -66.11 REMARK 500 ALA A 325 82.17 -158.92 REMARK 500 TYR A 330 -69.47 -153.14 REMARK 500 GLU A 337 117.54 -160.90 REMARK 500 VAL A 357 -35.48 -132.33 REMARK 500 LEU A 478 75.46 -111.76 REMARK 500 THR A 502 -156.35 -138.50 REMARK 500 GLU B 98 -163.83 -105.36 REMARK 500 MET B 104 -146.13 -97.58 REMARK 500 GLN B 120 -56.21 59.51 REMARK 500 ASN B 146 116.89 -166.80 REMARK 500 ARG B 169 -46.01 -147.85 REMARK 500 PRO B 184 -100.48 -22.45 REMARK 500 MET B 185 52.74 -111.23 REMARK 500 GLN B 203 -28.15 74.88 REMARK 500 ILE B 216 -35.67 -172.50 REMARK 500 LEU B 324 101.83 -56.90 REMARK 500 LEU B 328 -5.38 -149.16 REMARK 500 SER B 356 43.06 -79.31 REMARK 500 ARG B 375 92.29 -66.39 REMARK 500 CYS B 379 148.57 -172.77 REMARK 500 GLU B 401 -22.59 70.29 REMARK 500 LYS B 437 75.81 -113.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 183 PRO A 184 -147.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 5W6M A 54 503 UNP P12081 SYHC_HUMAN 54 503 DBREF 5W6M B 54 503 UNP P12081 SYHC_HUMAN 54 503 SEQADV 5W6M GLU A 175 UNP P12081 ASP 175 ENGINEERED MUTATION SEQADV 5W6M GLU B 175 UNP P12081 ASP 175 ENGINEERED MUTATION SEQRES 1 A 450 PHE VAL LEU LYS THR PRO LYS GLY THR ARG ASP TYR SER SEQRES 2 A 450 PRO ARG GLN MET ALA VAL ARG GLU LYS VAL PHE ASP VAL SEQRES 3 A 450 ILE ILE ARG CYS PHE LYS ARG HIS GLY ALA GLU VAL ILE SEQRES 4 A 450 ASP THR PRO VAL PHE GLU LEU LYS GLU THR LEU MET GLY SEQRES 5 A 450 LYS TYR GLY GLU ASP SER LYS LEU ILE TYR ASP LEU LYS SEQRES 6 A 450 ASP GLN GLY GLY GLU LEU LEU SER LEU ARG TYR ASP LEU SEQRES 7 A 450 THR VAL PRO PHE ALA ARG TYR LEU ALA MET ASN LYS LEU SEQRES 8 A 450 THR ASN ILE LYS ARG TYR HIS ILE ALA LYS VAL TYR ARG SEQRES 9 A 450 ARG ASP ASN PRO ALA MET THR ARG GLY ARG TYR ARG GLU SEQRES 10 A 450 PHE TYR GLN CYS GLU PHE ASP ILE ALA GLY ASN PHE ASP SEQRES 11 A 450 PRO MET ILE PRO ASP ALA GLU CYS LEU LYS ILE MET CYS SEQRES 12 A 450 GLU ILE LEU SER SER LEU GLN ILE GLY ASP PHE LEU VAL SEQRES 13 A 450 LYS VAL ASN ASP ARG ARG ILE LEU ASP GLY MET PHE ALA SEQRES 14 A 450 ILE CYS GLY VAL SER ASP SER LYS PHE ARG THR ILE CYS SEQRES 15 A 450 SER SER VAL ASP LYS LEU ASP LYS VAL SER TRP GLU GLU SEQRES 16 A 450 VAL LYS ASN GLU MET VAL GLY GLU LYS GLY LEU ALA PRO SEQRES 17 A 450 GLU VAL ALA ASP ARG ILE GLY ASP TYR VAL GLN GLN HIS SEQRES 18 A 450 GLY GLY VAL SER LEU VAL GLU GLN LEU LEU GLN ASP PRO SEQRES 19 A 450 LYS LEU SER GLN ASN LYS GLN ALA LEU GLU GLY LEU GLY SEQRES 20 A 450 ASP LEU LYS LEU LEU PHE GLU TYR LEU THR LEU PHE GLY SEQRES 21 A 450 ILE ASP ASP LYS ILE SER PHE ASP LEU SER LEU ALA ARG SEQRES 22 A 450 GLY LEU ASP TYR TYR THR GLY VAL ILE TYR GLU ALA VAL SEQRES 23 A 450 LEU LEU GLN THR PRO ALA GLN ALA GLY GLU GLU PRO LEU SEQRES 24 A 450 GLY VAL GLY SER VAL ALA ALA GLY GLY ARG TYR ASP GLY SEQRES 25 A 450 LEU VAL GLY MET PHE ASP PRO LYS GLY ARG LYS VAL PRO SEQRES 26 A 450 CYS VAL GLY LEU SER ILE GLY VAL GLU ARG ILE PHE SER SEQRES 27 A 450 ILE VAL GLU GLN ARG LEU GLU ALA LEU GLU GLU LYS ILE SEQRES 28 A 450 ARG THR THR GLU THR GLN VAL LEU VAL ALA SER ALA GLN SEQRES 29 A 450 LYS LYS LEU LEU GLU GLU ARG LEU LYS LEU VAL SER GLU SEQRES 30 A 450 LEU TRP ASP ALA GLY ILE LYS ALA GLU LEU LEU TYR LYS SEQRES 31 A 450 LYS ASN PRO LYS LEU LEU ASN GLN LEU GLN TYR CYS GLU SEQRES 32 A 450 GLU ALA GLY ILE PRO LEU VAL ALA ILE ILE GLY GLU GLN SEQRES 33 A 450 GLU LEU LYS ASP GLY VAL ILE LYS LEU ARG SER VAL THR SEQRES 34 A 450 SER ARG GLU GLU VAL ASP VAL ARG ARG GLU ASP LEU VAL SEQRES 35 A 450 GLU GLU ILE LYS ARG ARG THR GLY SEQRES 1 B 450 PHE VAL LEU LYS THR PRO LYS GLY THR ARG ASP TYR SER SEQRES 2 B 450 PRO ARG GLN MET ALA VAL ARG GLU LYS VAL PHE ASP VAL SEQRES 3 B 450 ILE ILE ARG CYS PHE LYS ARG HIS GLY ALA GLU VAL ILE SEQRES 4 B 450 ASP THR PRO VAL PHE GLU LEU LYS GLU THR LEU MET GLY SEQRES 5 B 450 LYS TYR GLY GLU ASP SER LYS LEU ILE TYR ASP LEU LYS SEQRES 6 B 450 ASP GLN GLY GLY GLU LEU LEU SER LEU ARG TYR ASP LEU SEQRES 7 B 450 THR VAL PRO PHE ALA ARG TYR LEU ALA MET ASN LYS LEU SEQRES 8 B 450 THR ASN ILE LYS ARG TYR HIS ILE ALA LYS VAL TYR ARG SEQRES 9 B 450 ARG ASP ASN PRO ALA MET THR ARG GLY ARG TYR ARG GLU SEQRES 10 B 450 PHE TYR GLN CYS GLU PHE ASP ILE ALA GLY ASN PHE ASP SEQRES 11 B 450 PRO MET ILE PRO ASP ALA GLU CYS LEU LYS ILE MET CYS SEQRES 12 B 450 GLU ILE LEU SER SER LEU GLN ILE GLY ASP PHE LEU VAL SEQRES 13 B 450 LYS VAL ASN ASP ARG ARG ILE LEU ASP GLY MET PHE ALA SEQRES 14 B 450 ILE CYS GLY VAL SER ASP SER LYS PHE ARG THR ILE CYS SEQRES 15 B 450 SER SER VAL ASP LYS LEU ASP LYS VAL SER TRP GLU GLU SEQRES 16 B 450 VAL LYS ASN GLU MET VAL GLY GLU LYS GLY LEU ALA PRO SEQRES 17 B 450 GLU VAL ALA ASP ARG ILE GLY ASP TYR VAL GLN GLN HIS SEQRES 18 B 450 GLY GLY VAL SER LEU VAL GLU GLN LEU LEU GLN ASP PRO SEQRES 19 B 450 LYS LEU SER GLN ASN LYS GLN ALA LEU GLU GLY LEU GLY SEQRES 20 B 450 ASP LEU LYS LEU LEU PHE GLU TYR LEU THR LEU PHE GLY SEQRES 21 B 450 ILE ASP ASP LYS ILE SER PHE ASP LEU SER LEU ALA ARG SEQRES 22 B 450 GLY LEU ASP TYR TYR THR GLY VAL ILE TYR GLU ALA VAL SEQRES 23 B 450 LEU LEU GLN THR PRO ALA GLN ALA GLY GLU GLU PRO LEU SEQRES 24 B 450 GLY VAL GLY SER VAL ALA ALA GLY GLY ARG TYR ASP GLY SEQRES 25 B 450 LEU VAL GLY MET PHE ASP PRO LYS GLY ARG LYS VAL PRO SEQRES 26 B 450 CYS VAL GLY LEU SER ILE GLY VAL GLU ARG ILE PHE SER SEQRES 27 B 450 ILE VAL GLU GLN ARG LEU GLU ALA LEU GLU GLU LYS ILE SEQRES 28 B 450 ARG THR THR GLU THR GLN VAL LEU VAL ALA SER ALA GLN SEQRES 29 B 450 LYS LYS LEU LEU GLU GLU ARG LEU LYS LEU VAL SER GLU SEQRES 30 B 450 LEU TRP ASP ALA GLY ILE LYS ALA GLU LEU LEU TYR LYS SEQRES 31 B 450 LYS ASN PRO LYS LEU LEU ASN GLN LEU GLN TYR CYS GLU SEQRES 32 B 450 GLU ALA GLY ILE PRO LEU VAL ALA ILE ILE GLY GLU GLN SEQRES 33 B 450 GLU LEU LYS ASP GLY VAL ILE LYS LEU ARG SER VAL THR SEQRES 34 B 450 SER ARG GLU GLU VAL ASP VAL ARG ARG GLU ASP LEU VAL SEQRES 35 B 450 GLU GLU ILE LYS ARG ARG THR GLY HELIX 1 AA1 SER A 66 HIS A 87 1 22 HELIX 2 AA2 LEU A 99 MET A 104 5 6 HELIX 3 AA3 LEU A 131 LYS A 143 1 13 HELIX 4 AA4 MET A 185 LEU A 202 1 18 HELIX 5 AA5 ARG A 214 GLY A 225 1 12 HELIX 6 AA6 LYS A 230 ASP A 239 1 10 HELIX 7 AA7 LYS A 240 LYS A 243 5 4 HELIX 8 AA8 SER A 245 GLY A 258 1 14 HELIX 9 AA9 ALA A 260 GLN A 272 1 13 HELIX 10 AB1 GLY A 276 GLN A 285 1 10 HELIX 11 AB2 ASN A 292 PHE A 312 1 21 HELIX 12 AB3 LEU A 366 PHE A 370 5 5 HELIX 13 AB4 GLY A 385 GLU A 398 1 14 HELIX 14 AB5 LEU A 420 GLY A 435 1 16 HELIX 15 AB6 LYS A 447 GLY A 459 1 13 HELIX 16 AB7 GLY A 467 ASP A 473 1 7 HELIX 17 AB8 ARG A 491 THR A 502 1 12 HELIX 18 AB9 SER B 66 LYS B 85 1 20 HELIX 19 AC1 GLU B 101 MET B 104 5 4 HELIX 20 AC2 LEU B 131 LYS B 143 1 13 HELIX 21 AC3 MET B 185 LEU B 202 1 18 HELIX 22 AC4 ALA B 295 PHE B 312 1 18 HELIX 23 AC5 ILE B 314 ASP B 316 5 3 HELIX 24 AC6 GLY B 385 LEU B 397 1 13 HELIX 25 AC7 LEU B 420 ALA B 434 1 15 HELIX 26 AC8 LYS B 447 GLY B 459 1 13 HELIX 27 AC9 GLY B 467 LYS B 472 1 6 HELIX 28 AD1 ARG B 491 ARG B 501 1 11 SHEET 1 AA1 9 GLU A 90 VAL A 91 0 SHEET 2 AA1 9 ILE A 147 TYR A 156 1 O LYS A 148 N GLU A 90 SHEET 3 AA1 9 GLU A 170 ALA A 179 -1 O ALA A 179 N ILE A 147 SHEET 4 AA1 9 CYS A 379 ILE A 384 -1 O LEU A 382 N PHE A 176 SHEET 5 AA1 9 SER A 356 ARG A 362 -1 N ALA A 359 O SER A 383 SHEET 6 AA1 9 VAL A 334 LEU A 340 -1 N ALA A 338 O ALA A 358 SHEET 7 AA1 9 PHE A 207 ASP A 213 -1 N LYS A 210 O GLU A 337 SHEET 8 AA1 9 ILE A 318 ASP A 321 1 O SER A 319 N VAL A 209 SHEET 9 AA1 9 HIS A 274 GLY A 275 -1 N GLY A 275 O PHE A 320 SHEET 1 AA2 2 PHE A 97 GLU A 98 0 SHEET 2 AA2 2 SER A 126 LEU A 127 -1 O SER A 126 N GLU A 98 SHEET 1 AA3 5 ALA A 438 GLU A 439 0 SHEET 2 AA3 5 VAL A 411 ALA A 414 1 N VAL A 413 O GLU A 439 SHEET 3 AA3 5 LEU A 462 ILE A 465 1 O ALA A 464 N ALA A 414 SHEET 4 AA3 5 VAL A 475 SER A 480 -1 O LYS A 477 N ILE A 465 SHEET 5 AA3 5 ASP A 488 ARG A 490 -1 O VAL A 489 N ILE A 476 SHEET 1 AA4 8 GLU B 90 VAL B 91 0 SHEET 2 AA4 8 ILE B 147 TYR B 156 1 O TYR B 150 N GLU B 90 SHEET 3 AA4 8 GLU B 170 ALA B 179 -1 O GLN B 173 N ALA B 153 SHEET 4 AA4 8 VAL B 380 ILE B 384 -1 O VAL B 380 N ILE B 178 SHEET 5 AA4 8 ALA B 358 ARG B 362 -1 N ALA B 359 O SER B 383 SHEET 6 AA4 8 VAL B 334 ALA B 338 -1 N TYR B 336 O GLY B 360 SHEET 7 AA4 8 VAL B 209 ASP B 213 -1 N ASN B 212 O ILE B 335 SHEET 8 AA4 8 ILE B 318 PHE B 320 1 O SER B 319 N VAL B 211 SHEET 1 AA5 2 PHE B 97 LEU B 99 0 SHEET 2 AA5 2 LEU B 125 LEU B 127 -1 O SER B 126 N GLU B 98 SHEET 1 AA6 5 ALA B 438 LEU B 440 0 SHEET 2 AA6 5 VAL B 411 ALA B 414 1 N VAL B 413 O GLU B 439 SHEET 3 AA6 5 LEU B 462 ILE B 465 1 O ALA B 464 N ALA B 414 SHEET 4 AA6 5 VAL B 475 SER B 480 -1 O LYS B 477 N ILE B 465 SHEET 5 AA6 5 GLU B 486 ARG B 490 -1 O VAL B 489 N ILE B 476 CISPEP 1 THR A 164 ARG A 165 0 6.80 CISPEP 2 ARG B 326 GLY B 327 0 -4.09 CRYST1 93.360 93.360 254.290 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010711 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003933 0.00000