HEADER TRANSFERASE 19-JUN-17 5W71 TITLE X-RAY STRUCTURE OF BTRR FROM BACILLUS CIRCULANS IN THE PRESENCE OF THE TITLE 2 2-DOS EXTERNAL ALDIMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-GLUTAMINE:2-DEOXY-SCYLLO-INOSOSE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: L-GLUTAMINE:DOI AMINOTRANSFERASE,L-GLUTAMINE:3-AMINO-2,3- COMPND 5 DIDEOXY-SCYLLO-INOSOSE AMINOTRANSFERASE,L-GLUTAMINE:AMINO-DOI COMPND 6 AMINOTRANSFERASE; COMPND 7 EC: 2.6.1.100,2.6.1.101; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CIRCULANS; SOURCE 3 ORGANISM_TAXID: 1397; SOURCE 4 GENE: BTRR, BTRS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BUTIROSIN, AMINOTRANSFERASE, AMINOGLYCOSIDE, AMINOCYCLITOL KEYWDS 2 ANTIBIOTIC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.R.ZACHMAN-BROCKMEYER,J.B.THODEN,H.M.HOLDEN REVDAT 6 04-OCT-23 5W71 1 REMARK REVDAT 5 01-JAN-20 5W71 1 REMARK REVDAT 4 27-SEP-17 5W71 1 REMARK REVDAT 3 06-SEP-17 5W71 1 JRNL REVDAT 2 19-JUL-17 5W71 1 JRNL REVDAT 1 12-JUL-17 5W71 0 JRNL AUTH T.R.ZACHMAN-BROCKMEYER,J.B.THODEN,H.M.HOLDEN JRNL TITL THE STRUCTURE OF RBMB FROM STREPTOMYCES RIBOSIDIFICUS, AN JRNL TITL 2 AMINOTRANSFERASE INVOLVED IN THE BIOSYNTHESIS OF JRNL TITL 3 RIBOSTAMYCIN. JRNL REF PROTEIN SCI. V. 26 1886 2017 JRNL REFN ESSN 1469-896X JRNL PMID 28685903 JRNL DOI 10.1002/PRO.3221 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 52130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2711 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3580 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.08000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6704 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6326 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9099 ; 1.669 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14555 ; 1.035 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 822 ; 6.367 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 313 ;38.862 ;24.281 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1125 ;17.300 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;21.344 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 994 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7601 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1569 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3288 ; 1.538 ; 2.161 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3287 ; 1.538 ; 2.160 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4107 ; 2.438 ; 3.233 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4108 ; 2.437 ; 3.234 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3416 ; 2.104 ; 2.419 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3417 ; 2.103 ; 2.419 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4992 ; 3.403 ; 3.522 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8058 ; 4.747 ;17.575 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7943 ; 4.718 ;17.509 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5W71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONTEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2C7T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-17% PEG-5000, 200 MM NACL, 100 MM REMARK 280 MOPS, 1 MM PLP, 5 MM 2-DOS, PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.70000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLU A -9 REMARK 465 ASN A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 PHE A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 416 REMARK 465 THR A 417 REMARK 465 HIS A 418 REMARK 465 MET B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLU B -9 REMARK 465 ASN B -8 REMARK 465 LEU B -7 REMARK 465 TYR B -6 REMARK 465 PHE B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ILE B 3 REMARK 465 PRO B 4 REMARK 465 PHE B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 416 REMARK 465 THR B 417 REMARK 465 HIS B 418 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 3 CG1 CG2 CD1 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 272 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 364 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 364 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 412 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 380 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 140 -83.55 63.72 REMARK 500 SER A 167 34.96 -155.60 REMARK 500 ASN A 173 55.83 39.69 REMARK 500 SER A 228 61.49 -114.43 REMARK 500 GLU A 229 38.70 -153.08 REMARK 500 LYS A 240 -59.35 -130.69 REMARK 500 CYS A 352 58.67 -153.88 REMARK 500 LYS A 365 -131.66 52.44 REMARK 500 SER B 15 -166.93 -126.49 REMARK 500 PHE B 140 -77.16 66.49 REMARK 500 SER B 167 35.45 -152.26 REMARK 500 SER B 220 22.51 80.54 REMARK 500 LYS B 240 -58.90 -139.31 REMARK 500 TYR B 342 133.03 -24.55 REMARK 500 CYS B 352 55.61 -158.06 REMARK 500 LYS B 365 -136.52 57.04 REMARK 500 PHE B 414 58.62 -95.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 828 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 756 DISTANCE = 5.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9YM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W70 RELATED DB: PDB DBREF 5W71 A 1 418 UNP Q8G8Y2 GLDSA_BACCI 1 418 DBREF 5W71 B 1 418 UNP Q8G8Y2 GLDSA_BACCI 1 418 SEQADV 5W71 MET A -21 UNP Q8G8Y2 INITIATING METHIONINE SEQADV 5W71 GLY A -20 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 SER A -19 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 SER A -18 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS A -17 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS A -16 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS A -15 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS A -14 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS A -13 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS A -12 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 SER A -11 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 SER A -10 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 GLU A -9 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 ASN A -8 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 LEU A -7 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 TYR A -6 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 PHE A -5 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 GLN A -4 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 GLY A -3 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 GLY A -2 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 GLY A -1 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS A 0 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 MET B -21 UNP Q8G8Y2 INITIATING METHIONINE SEQADV 5W71 GLY B -20 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 SER B -19 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 SER B -18 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS B -17 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS B -16 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS B -15 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS B -14 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS B -13 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS B -12 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 SER B -11 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 SER B -10 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 GLU B -9 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 ASN B -8 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 LEU B -7 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 TYR B -6 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 PHE B -5 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 GLN B -4 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 GLY B -3 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 GLY B -2 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 GLY B -1 UNP Q8G8Y2 EXPRESSION TAG SEQADV 5W71 HIS B 0 UNP Q8G8Y2 EXPRESSION TAG SEQRES 1 A 440 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 A 440 ASN LEU TYR PHE GLN GLY GLY GLY HIS MET THR ILE PRO SEQRES 3 A 440 PHE ASP HIS TRP PRO GLU TRP PRO GLN HIS SER ASP ARG SEQRES 4 A 440 THR ARG ARG LYS ILE GLU GLU VAL PHE GLN SER ASN ARG SEQRES 5 A 440 TRP ALA ILE SER GLY TYR TRP THR GLY GLU GLU SER MET SEQRES 6 A 440 GLU ARG LYS PHE ALA LYS ALA PHE ALA ASP PHE ASN GLY SEQRES 7 A 440 VAL PRO TYR CYS VAL PRO THR THR SER GLY SER THR ALA SEQRES 8 A 440 LEU MET LEU ALA LEU GLU ALA LEU GLY ILE GLY GLU GLY SEQRES 9 A 440 ASP GLU VAL ILE VAL PRO SER LEU THR TRP ILE ALA THR SEQRES 10 A 440 ALA THR ALA VAL LEU ASN VAL ASN ALA LEU PRO VAL PHE SEQRES 11 A 440 VAL ASP VAL GLU ALA ASP THR TYR CYS ILE ASP PRO GLN SEQRES 12 A 440 LEU ILE LYS SER ALA ILE THR ASP LYS THR LYS ALA ILE SEQRES 13 A 440 ILE PRO VAL HIS LEU PHE GLY SER MET ALA ASN MET ASP SEQRES 14 A 440 GLU ILE ASN GLU ILE ALA GLN GLU HIS ASN LEU PHE VAL SEQRES 15 A 440 ILE GLU ASP CYS ALA GLN SER HIS GLY SER VAL TRP ASN SEQRES 16 A 440 ASN GLN ARG ALA GLY THR ILE GLY ASP ILE GLY ALA PHE SEQRES 17 A 440 SER CYS GLN GLN GLY LYS VAL LEU THR ALA GLY GLU GLY SEQRES 18 A 440 GLY ILE ILE VAL THR LYS ASN PRO ARG LEU PHE GLU LEU SEQRES 19 A 440 ILE GLN GLN LEU ARG ALA ASP SER ARG VAL TYR CYS ASP SEQRES 20 A 440 ASP SER SER GLU LEU MET HIS GLY ASP MET GLN LEU VAL SEQRES 21 A 440 LYS LYS GLY ASP ILE GLN GLY SER ASN TYR CYS LEU SER SEQRES 22 A 440 GLU PHE GLN SER ALA ILE LEU LEU ASP GLN LEU GLN GLU SEQRES 23 A 440 LEU ASP ASP LYS ASN ALA ILE ARG GLU LYS ASN ALA MET SEQRES 24 A 440 PHE LEU ASN ASP ALA LEU SER LYS ILE ASP GLY ILE LYS SEQRES 25 A 440 VAL MET LYS ARG PRO PRO GLN VAL SER ARG GLN THR TYR SEQRES 26 A 440 TYR GLY TYR VAL PHE ARG PHE ASP PRO VAL LYS PHE GLY SEQRES 27 A 440 GLY LEU ASN ALA ASP GLN PHE CYS GLU ILE LEU ARG GLU SEQRES 28 A 440 LYS LEU ASN MET GLY THR PHE TYR LEU HIS PRO PRO TYR SEQRES 29 A 440 LEU PRO VAL HIS LYS ASN PRO LEU PHE CYS PRO TRP THR SEQRES 30 A 440 LYS ASN ARG TYR LEU LYS SER VAL ARG LYS THR GLU ALA SEQRES 31 A 440 TYR TRP ARG GLY LEU HIS TYR PRO VAL SER GLU ARG ALA SEQRES 32 A 440 SER GLY GLN SER ILE VAL ILE HIS HIS ALA ILE LEU LEU SEQRES 33 A 440 ALA GLU PRO SER HIS LEU SER LEU LEU VAL ASP ALA VAL SEQRES 34 A 440 ALA GLU LEU ALA ARG LYS PHE CYS VAL THR HIS SEQRES 1 B 440 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLU SEQRES 2 B 440 ASN LEU TYR PHE GLN GLY GLY GLY HIS MET THR ILE PRO SEQRES 3 B 440 PHE ASP HIS TRP PRO GLU TRP PRO GLN HIS SER ASP ARG SEQRES 4 B 440 THR ARG ARG LYS ILE GLU GLU VAL PHE GLN SER ASN ARG SEQRES 5 B 440 TRP ALA ILE SER GLY TYR TRP THR GLY GLU GLU SER MET SEQRES 6 B 440 GLU ARG LYS PHE ALA LYS ALA PHE ALA ASP PHE ASN GLY SEQRES 7 B 440 VAL PRO TYR CYS VAL PRO THR THR SER GLY SER THR ALA SEQRES 8 B 440 LEU MET LEU ALA LEU GLU ALA LEU GLY ILE GLY GLU GLY SEQRES 9 B 440 ASP GLU VAL ILE VAL PRO SER LEU THR TRP ILE ALA THR SEQRES 10 B 440 ALA THR ALA VAL LEU ASN VAL ASN ALA LEU PRO VAL PHE SEQRES 11 B 440 VAL ASP VAL GLU ALA ASP THR TYR CYS ILE ASP PRO GLN SEQRES 12 B 440 LEU ILE LYS SER ALA ILE THR ASP LYS THR LYS ALA ILE SEQRES 13 B 440 ILE PRO VAL HIS LEU PHE GLY SER MET ALA ASN MET ASP SEQRES 14 B 440 GLU ILE ASN GLU ILE ALA GLN GLU HIS ASN LEU PHE VAL SEQRES 15 B 440 ILE GLU ASP CYS ALA GLN SER HIS GLY SER VAL TRP ASN SEQRES 16 B 440 ASN GLN ARG ALA GLY THR ILE GLY ASP ILE GLY ALA PHE SEQRES 17 B 440 SER CYS GLN GLN GLY LYS VAL LEU THR ALA GLY GLU GLY SEQRES 18 B 440 GLY ILE ILE VAL THR LYS ASN PRO ARG LEU PHE GLU LEU SEQRES 19 B 440 ILE GLN GLN LEU ARG ALA ASP SER ARG VAL TYR CYS ASP SEQRES 20 B 440 ASP SER SER GLU LEU MET HIS GLY ASP MET GLN LEU VAL SEQRES 21 B 440 LYS LYS GLY ASP ILE GLN GLY SER ASN TYR CYS LEU SER SEQRES 22 B 440 GLU PHE GLN SER ALA ILE LEU LEU ASP GLN LEU GLN GLU SEQRES 23 B 440 LEU ASP ASP LYS ASN ALA ILE ARG GLU LYS ASN ALA MET SEQRES 24 B 440 PHE LEU ASN ASP ALA LEU SER LYS ILE ASP GLY ILE LYS SEQRES 25 B 440 VAL MET LYS ARG PRO PRO GLN VAL SER ARG GLN THR TYR SEQRES 26 B 440 TYR GLY TYR VAL PHE ARG PHE ASP PRO VAL LYS PHE GLY SEQRES 27 B 440 GLY LEU ASN ALA ASP GLN PHE CYS GLU ILE LEU ARG GLU SEQRES 28 B 440 LYS LEU ASN MET GLY THR PHE TYR LEU HIS PRO PRO TYR SEQRES 29 B 440 LEU PRO VAL HIS LYS ASN PRO LEU PHE CYS PRO TRP THR SEQRES 30 B 440 LYS ASN ARG TYR LEU LYS SER VAL ARG LYS THR GLU ALA SEQRES 31 B 440 TYR TRP ARG GLY LEU HIS TYR PRO VAL SER GLU ARG ALA SEQRES 32 B 440 SER GLY GLN SER ILE VAL ILE HIS HIS ALA ILE LEU LEU SEQRES 33 B 440 ALA GLU PRO SER HIS LEU SER LEU LEU VAL ASP ALA VAL SEQRES 34 B 440 ALA GLU LEU ALA ARG LYS PHE CYS VAL THR HIS HET PLP A 501 16 HET 9YM B 501 26 HET CL B 502 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM 9YM [4-({[(1R,2S,3S,4R,5S)-5-AMINO-2,3,4- HETNAM 2 9YM TRIHYDROXYCYCLOHEXYL]AMINO}METHYL)-5-HYDROXY-6- HETNAM 3 9YM METHYLPYRIDIN-3-YL]METHYL DIHYDROGEN PHOSPHATE HETNAM CL CHLORIDE ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP C8 H10 N O6 P FORMUL 4 9YM C14 H24 N3 O8 P FORMUL 5 CL CL 1- FORMUL 6 HOH *384(H2 O) HELIX 1 AA1 SER A 15 ASN A 29 1 15 HELIX 2 AA2 SER A 42 GLY A 56 1 15 HELIX 3 AA3 SER A 65 LEU A 77 1 13 HELIX 4 AA4 ILE A 93 VAL A 102 1 10 HELIX 5 AA5 ASP A 119 ILE A 127 5 9 HELIX 6 AA6 ASN A 145 HIS A 156 1 12 HELIX 7 AA7 ASN A 206 ALA A 218 1 13 HELIX 8 AA8 SER A 251 SER A 284 1 34 HELIX 9 AA9 PRO A 312 PHE A 315 5 4 HELIX 10 AB1 ASN A 319 ASN A 332 1 14 HELIX 11 AB2 PRO A 344 ASN A 348 5 5 HELIX 12 AB3 CYS A 352 LYS A 356 5 5 HELIX 13 AB4 LEU A 360 LYS A 365 1 6 HELIX 14 AB5 THR A 366 GLY A 372 1 7 HELIX 15 AB6 TYR A 375 GLN A 384 1 10 HELIX 16 AB7 ALA A 391 ALA A 395 5 5 HELIX 17 AB8 GLU A 396 PHE A 414 1 19 HELIX 18 AB9 SER B 15 ASN B 29 1 15 HELIX 19 AC1 SER B 42 GLY B 56 1 15 HELIX 20 AC2 SER B 65 LEU B 77 1 13 HELIX 21 AC3 ILE B 93 VAL B 102 1 10 HELIX 22 AC4 ASP B 119 ILE B 127 1 9 HELIX 23 AC5 ASN B 145 ASN B 157 1 13 HELIX 24 AC6 ASN B 206 ALA B 218 1 13 HELIX 25 AC7 ASP B 226 LEU B 230 5 5 HELIX 26 AC8 SER B 251 GLN B 263 1 13 HELIX 27 AC9 GLU B 264 LYS B 285 1 22 HELIX 28 AD1 PRO B 312 PHE B 315 5 4 HELIX 29 AD2 ASN B 319 ASN B 332 1 14 HELIX 30 AD3 PRO B 344 ASN B 348 5 5 HELIX 31 AD4 CYS B 352 LYS B 356 5 5 HELIX 32 AD5 LEU B 360 LYS B 365 1 6 HELIX 33 AD6 THR B 366 GLY B 372 1 7 HELIX 34 AD7 TYR B 375 GLN B 384 1 10 HELIX 35 AD8 ALA B 391 ALA B 395 5 5 HELIX 36 AD9 GLU B 396 PHE B 414 1 19 SHEET 1 AA1 7 TYR A 59 THR A 63 0 SHEET 2 AA1 7 GLY A 200 THR A 204 -1 O ILE A 202 N VAL A 61 SHEET 3 AA1 7 ILE A 183 SER A 187 -1 N GLY A 184 O VAL A 203 SHEET 4 AA1 7 PHE A 159 ASP A 163 1 N GLU A 162 O ALA A 185 SHEET 5 AA1 7 THR A 131 ILE A 134 1 N LYS A 132 O PHE A 159 SHEET 6 AA1 7 GLU A 84 PRO A 88 1 N ILE A 86 O ALA A 133 SHEET 7 AA1 7 LEU A 105 VAL A 109 1 O VAL A 107 N VAL A 87 SHEET 1 AA2 3 GLN A 175 ARG A 176 0 SHEET 2 AA2 3 VAL A 171 TRP A 172 -1 N TRP A 172 O GLN A 175 SHEET 3 AA2 3 VAL A 298 ARG A 300 -1 O ARG A 300 N VAL A 171 SHEET 1 AA3 2 ARG A 221 TYR A 223 0 SHEET 2 AA3 2 LEU A 237 LYS A 239 -1 O VAL A 238 N VAL A 222 SHEET 1 AA4 4 ILE A 289 VAL A 291 0 SHEET 2 AA4 4 GLY A 305 PHE A 310 -1 O ARG A 309 N LYS A 290 SHEET 3 AA4 4 SER A 385 HIS A 389 -1 O ILE A 388 N TYR A 306 SHEET 4 AA4 4 LEU A 338 HIS A 339 -1 N HIS A 339 O VAL A 387 SHEET 1 AA5 7 TYR B 59 THR B 63 0 SHEET 2 AA5 7 GLY B 200 THR B 204 -1 O ILE B 202 N VAL B 61 SHEET 3 AA5 7 ILE B 183 SER B 187 -1 N GLY B 184 O VAL B 203 SHEET 4 AA5 7 PHE B 159 ASP B 163 1 N GLU B 162 O ALA B 185 SHEET 5 AA5 7 THR B 131 ILE B 134 1 N ILE B 134 O ILE B 161 SHEET 6 AA5 7 GLU B 84 PRO B 88 1 N ILE B 86 O ALA B 133 SHEET 7 AA5 7 LEU B 105 VAL B 109 1 O VAL B 107 N VAL B 85 SHEET 1 AA6 3 GLN B 175 ARG B 176 0 SHEET 2 AA6 3 VAL B 171 TRP B 172 -1 N TRP B 172 O GLN B 175 SHEET 3 AA6 3 VAL B 298 ARG B 300 -1 O ARG B 300 N VAL B 171 SHEET 1 AA7 2 ARG B 221 TYR B 223 0 SHEET 2 AA7 2 LEU B 237 LYS B 239 -1 O VAL B 238 N VAL B 222 SHEET 1 AA8 4 ILE B 289 VAL B 291 0 SHEET 2 AA8 4 GLY B 305 PHE B 310 -1 O ARG B 309 N LYS B 290 SHEET 3 AA8 4 SER B 385 HIS B 389 -1 O ILE B 388 N TYR B 306 SHEET 4 AA8 4 LEU B 338 HIS B 339 -1 N HIS B 339 O VAL B 387 CISPEP 1 TRP A 11 PRO A 12 0 6.00 CISPEP 2 TRP B 11 PRO B 12 0 13.32 SITE 1 AC1 17 SER A 65 GLY A 66 SER A 67 THR A 91 SITE 2 AC1 17 TRP A 92 THR A 95 ASP A 163 ALA A 165 SITE 3 AC1 17 GLN A 166 SER A 187 GLN A 189 LYS A 192 SITE 4 AC1 17 HOH A 612 HOH A 682 HOH A 743 HOH A 765 SITE 5 AC1 17 ASN B 247 SITE 1 AC2 19 SER A 34 ARG A 221 ASN A 247 HOH A 696 SITE 2 AC2 19 SER B 65 GLY B 66 SER B 67 THR B 91 SITE 3 AC2 19 TRP B 92 ALA B 94 ASP B 163 ALA B 165 SITE 4 AC2 19 GLN B 166 SER B 187 GLN B 189 LYS B 192 SITE 5 AC2 19 TYR B 342 HOH B 663 HOH B 682 SITE 1 AC3 2 TRP B 92 ASN B 348 CRYST1 69.400 74.800 180.100 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014409 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005552 0.00000