HEADER HYDROLASE 19-JUN-17 5W7A TITLE RABBIT ACYLOXYACYL HYDROLASE (AOAH), PROTEOLYTICALLY PROCESSED, S262A TITLE 2 MUTANT, WITH LPS (LOW QUALITY SAPOSIN DOMAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYLOXYACYL HYDROLASE SMALL SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 23-153; COMPND 5 EC: 3.1.1.77; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACYLOXYACYL HYDROLASE LARGE SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 154-575; COMPND 11 EC: 3.1.1.77; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 GENE: AOAH; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 11 ORGANISM_COMMON: RABBIT; SOURCE 12 ORGANISM_TAXID: 9986; SOURCE 13 GENE: AOAH; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS LIPOPOLYSACCHARIDE, LPS, GDSL ESTERASE, SAPOSIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GORELIK,K.ILLES,B.NAGAR REVDAT 7 06-NOV-24 5W7A 1 HETSYN REVDAT 6 29-JUL-20 5W7A 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 08-JAN-20 5W7A 1 REMARK REVDAT 4 14-FEB-18 5W7A 1 JRNL REVDAT 3 31-JAN-18 5W7A 1 JRNL REVDAT 2 17-JAN-18 5W7A 1 JRNL REVDAT 1 03-JAN-18 5W7A 0 JRNL AUTH A.GORELIK,K.ILLES,B.NAGAR JRNL TITL CRYSTAL STRUCTURE OF THE MAMMALIAN LIPOPOLYSACCHARIDE JRNL TITL 2 DETOXIFIER. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E896 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29343645 JRNL DOI 10.1073/PNAS.1719834115 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 30589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6900 - 5.1105 0.99 2815 148 0.2146 0.2462 REMARK 3 2 5.1105 - 4.0584 1.00 2738 144 0.2006 0.2086 REMARK 3 3 4.0584 - 3.5460 1.00 2727 144 0.2137 0.2682 REMARK 3 4 3.5460 - 3.2220 1.00 2687 141 0.2356 0.2486 REMARK 3 5 3.2220 - 2.9912 1.00 2686 142 0.2507 0.2507 REMARK 3 6 2.9912 - 2.8149 1.00 2684 141 0.2721 0.2855 REMARK 3 7 2.8149 - 2.6740 1.00 2674 141 0.2681 0.3081 REMARK 3 8 2.6740 - 2.5577 1.00 2680 141 0.2806 0.2931 REMARK 3 9 2.5577 - 2.4592 1.00 2648 139 0.2806 0.2779 REMARK 3 10 2.4592 - 2.3744 0.98 2627 139 0.2957 0.3055 REMARK 3 11 2.3744 - 2.3002 0.78 2093 110 0.3107 0.3416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4005 REMARK 3 ANGLE : 0.746 5439 REMARK 3 CHIRALITY : 0.044 598 REMARK 3 PLANARITY : 0.004 694 REMARK 3 DIHEDRAL : 13.055 2386 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 37:127 ) OR ( CHAIN B AND RESID REMARK 3 169:177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0016 44.9684 26.3343 REMARK 3 T TENSOR REMARK 3 T11: 1.1216 T22: 1.2792 REMARK 3 T33: 0.4061 T12: -0.7144 REMARK 3 T13: -0.0986 T23: 0.3883 REMARK 3 L TENSOR REMARK 3 L11: 0.2498 L22: 1.7982 REMARK 3 L33: 0.4814 L12: -0.5059 REMARK 3 L13: 0.2927 L23: -0.2305 REMARK 3 S TENSOR REMARK 3 S11: -0.5359 S12: 1.1634 S13: 0.3615 REMARK 3 S21: -1.1863 S22: 0.4113 S23: -0.2617 REMARK 3 S31: -0.0124 S32: 0.2945 S33: 0.5875 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 178:305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5968 48.9983 60.2929 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.0262 REMARK 3 T33: 0.2945 T12: -0.0333 REMARK 3 T13: -0.1683 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 4.1193 L22: 2.8814 REMARK 3 L33: 1.2985 L12: 1.2787 REMARK 3 L13: -0.5944 L23: -0.1093 REMARK 3 S TENSOR REMARK 3 S11: -0.4488 S12: -0.2232 S13: 0.6642 REMARK 3 S21: -0.3018 S22: 0.2184 S23: -0.0180 REMARK 3 S31: -0.2396 S32: 0.1701 S33: 0.2549 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 306:388 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9209 39.9314 60.2763 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.0919 REMARK 3 T33: 0.1831 T12: 0.1084 REMARK 3 T13: -0.0796 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 4.1658 L22: 2.3702 REMARK 3 L33: 2.5709 L12: 1.5778 REMARK 3 L13: 0.4337 L23: 0.3533 REMARK 3 S TENSOR REMARK 3 S11: -0.4999 S12: -0.1803 S13: 0.3109 REMARK 3 S21: -0.3132 S22: 0.1859 S23: -0.0110 REMARK 3 S31: -0.1528 S32: -0.3105 S33: 0.1856 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 389:575 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4703 39.9519 58.2974 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.2690 REMARK 3 T33: 0.2807 T12: 0.0366 REMARK 3 T13: -0.1135 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 3.8040 L22: 1.2509 REMARK 3 L33: 2.1896 L12: 1.9351 REMARK 3 L13: 0.4187 L23: 0.5280 REMARK 3 S TENSOR REMARK 3 S11: -0.5441 S12: -0.2631 S13: 0.6363 REMARK 3 S21: -0.1569 S22: 0.1676 S23: 0.3364 REMARK 3 S31: -0.3090 S32: -0.5985 S33: 0.2512 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97243 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31484 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 45.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POST-TRYPSIN; 1 MM TRITON X-100, 0.333 REMARK 280 MM E. COLI LPS RA; 1 M SODIUM CITRATE PH 7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.95900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.95900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.78900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.59950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.78900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.59950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.95900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.78900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.59950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.95900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.78900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.59950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE AUTHOR STATES THAT THE PROTEIN WAS TREATED WITH TRYPSIN, AND REMARK 400 THE EXACT CUT SITE IS UNKNOWN BUT SHOULD BE SOMEWHERE BETWEEN K129 REMARK 400 AND R153. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 13 REMARK 465 ARG A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 HIS A 20 REMARK 465 LYS A 21 REMARK 465 LEU A 22 REMARK 465 SER A 23 REMARK 465 ARG A 24 REMARK 465 ALA A 25 REMARK 465 HIS A 26 REMARK 465 ASP A 27 REMARK 465 ASN A 28 REMARK 465 GLN A 29 REMARK 465 PRO A 30 REMARK 465 GLY A 31 REMARK 465 THR A 32 REMARK 465 ILE A 33 REMARK 465 ARG A 34 REMARK 465 SER A 35 REMARK 465 ASP A 36 REMARK 465 GLU A 74 REMARK 465 GLU A 75 REMARK 465 TRP A 76 REMARK 465 VAL A 77 REMARK 465 LEU A 78 REMARK 465 LYS A 79 REMARK 465 THR A 80 REMARK 465 LYS A 99 REMARK 465 ASP A 100 REMARK 465 VAL A 101 REMARK 465 PRO A 117 REMARK 465 GLY A 118 REMARK 465 GLN A 119 REMARK 465 PRO A 128 REMARK 465 LYS A 129 REMARK 465 GLU A 130 REMARK 465 SER A 131 REMARK 465 TRP A 132 REMARK 465 LYS A 133 REMARK 465 PHE A 134 REMARK 465 THR A 135 REMARK 465 LEU A 136 REMARK 465 GLU A 137 REMARK 465 LYS A 138 REMARK 465 ALA A 139 REMARK 465 ARG A 140 REMARK 465 HIS A 141 REMARK 465 ILE A 142 REMARK 465 VAL A 143 REMARK 465 LYS A 144 REMARK 465 GLN A 145 REMARK 465 SER A 146 REMARK 465 PRO A 147 REMARK 465 ILE A 148 REMARK 465 MET A 149 REMARK 465 LYS A 150 REMARK 465 TYR A 151 REMARK 465 THR A 152 REMARK 465 ARG A 153 REMARK 465 SER B 154 REMARK 465 GLY B 155 REMARK 465 ALA B 156 REMARK 465 GLY B 157 REMARK 465 ILE B 158 REMARK 465 CYS B 159 REMARK 465 SER B 160 REMARK 465 LEU B 161 REMARK 465 PRO B 162 REMARK 465 PHE B 163 REMARK 465 LEU B 164 REMARK 465 ALA B 165 REMARK 465 LYS B 166 REMARK 465 ILE B 167 REMARK 465 CYS B 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 37 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 MET A 84 CG SD CE REMARK 470 MET A 85 CG SD CE REMARK 470 PHE A 89 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 94 CG1 CG2 CD1 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ASP A 98 CG OD1 OD2 REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 ASP B 571 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 106 H LEU A 110 1.55 REMARK 500 O HIS B 429 HG1 THR B 445 1.55 REMARK 500 HH21 ARG B 325 O GLY B 556 1.56 REMARK 500 O GLN B 278 N SER B 280 2.03 REMARK 500 O MET A 85 N PHE A 89 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 94 -87.38 -98.69 REMARK 500 ASP B 183 80.43 -171.03 REMARK 500 LYS B 188 3.38 85.39 REMARK 500 ASP B 261 -153.99 -118.78 REMARK 500 HIS B 268 115.08 -162.10 REMARK 500 MET B 279 68.01 -43.06 REMARK 500 ALA B 310 21.12 -77.87 REMARK 500 THR B 380 -159.94 -130.25 REMARK 500 CYS B 459 89.95 -155.10 REMARK 500 ALA B 504 36.34 -76.57 REMARK 500 PHE B 529 -57.38 -147.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FTT B 609 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 183 OD1 REMARK 620 2 ASP B 185 OD1 77.8 REMARK 620 3 ASP B 187 OD1 94.4 84.0 REMARK 620 4 TYR B 189 O 86.8 163.1 90.2 REMARK 620 5 ASP B 204 OD2 176.1 100.8 89.1 95.0 REMARK 620 6 ASP B 207 OD1 84.5 80.7 164.6 105.0 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 185 OD2 REMARK 620 2 ASP B 187 OD2 86.2 REMARK 620 3 ASP B 204 OD1 124.4 107.6 REMARK 620 4 ASP B 204 OD2 83.0 78.0 50.4 REMARK 620 5 ASN B 206 O 78.2 159.7 72.0 87.3 REMARK 620 6 ASP B 209 O 75.3 99.6 146.7 158.3 88.9 REMARK 620 7 VAL B 212 O 157.2 87.3 78.3 116.9 112.0 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 222 OD2 REMARK 620 2 ASP B 226 OD2 82.4 REMARK 620 3 ASN B 228 OD1 92.5 87.8 REMARK 620 4 ASN B 230 OD1 166.2 92.6 74.4 REMARK 620 5 ILE B 232 O 102.1 85.6 163.0 90.2 REMARK 620 6 GLU B 244 OE2 95.7 169.6 102.5 91.5 84.8 REMARK 620 N 1 2 3 4 5 DBREF 5W7A A 23 153 UNP O18823 AOAH_RABIT 23 153 DBREF 5W7A B 154 575 UNP O18823 AOAH_RABIT 154 575 SEQADV 5W7A ASP A 13 UNP O18823 EXPRESSION TAG SEQADV 5W7A ARG A 14 UNP O18823 EXPRESSION TAG SEQADV 5W7A HIS A 15 UNP O18823 EXPRESSION TAG SEQADV 5W7A HIS A 16 UNP O18823 EXPRESSION TAG SEQADV 5W7A HIS A 17 UNP O18823 EXPRESSION TAG SEQADV 5W7A HIS A 18 UNP O18823 EXPRESSION TAG SEQADV 5W7A HIS A 19 UNP O18823 EXPRESSION TAG SEQADV 5W7A HIS A 20 UNP O18823 EXPRESSION TAG SEQADV 5W7A LYS A 21 UNP O18823 EXPRESSION TAG SEQADV 5W7A LEU A 22 UNP O18823 EXPRESSION TAG SEQADV 5W7A ALA B 262 UNP O18823 SER 262 ENGINEERED MUTATION SEQRES 1 A 141 ASP ARG HIS HIS HIS HIS HIS HIS LYS LEU SER ARG ALA SEQRES 2 A 141 HIS ASP ASN GLN PRO GLY THR ILE ARG SER ASP HIS TYR SEQRES 3 A 141 THR CYS VAL GLY CYS VAL LEU VAL VAL SER VAL ILE GLU SEQRES 4 A 141 GLN LEU ALA GLN VAL HIS ASN SER THR VAL GLN ALA SER SEQRES 5 A 141 MET GLU ARG LEU CYS SER TYR LEU PRO GLU GLU TRP VAL SEQRES 6 A 141 LEU LYS THR ALA CYS TYR MET MET VAL HIS VAL PHE GLY SEQRES 7 A 141 ALA ASP ILE ILE LYS LEU PHE ASP LYS ASP VAL ASN ALA SEQRES 8 A 141 ASP VAL VAL CYS HIS THR LEU GLU PHE CYS LYS GLN GLU SEQRES 9 A 141 PRO GLY GLN PRO LEU CYS HIS LEU TYR PRO LEU PRO LYS SEQRES 10 A 141 GLU SER TRP LYS PHE THR LEU GLU LYS ALA ARG HIS ILE SEQRES 11 A 141 VAL LYS GLN SER PRO ILE MET LYS TYR THR ARG SEQRES 1 B 422 SER GLY ALA GLY ILE CYS SER LEU PRO PHE LEU ALA LYS SEQRES 2 B 422 ILE CYS GLN LYS ILE LYS LEU ALA ILE LYS ASN SER VAL SEQRES 3 B 422 PRO ILE LYS ASP VAL ASP SER ASP LYS TYR SER ILE PHE SEQRES 4 B 422 PRO THR LEU ARG GLY TYR HIS TRP ARG GLY ARG ASP CYS SEQRES 5 B 422 ASN ASP SER ASP LYS THR VAL TYR PRO GLY ARG ARG PRO SEQRES 6 B 422 ASP ASN TRP ASP ALA HIS ARG ASP SER ASN CYS ASN GLY SEQRES 7 B 422 ILE TRP GLY VAL ASP PRO LYS ASP GLY ILE PRO TYR GLU SEQRES 8 B 422 LYS LYS PHE CYS GLU GLY SER GLN PRO ARG GLY ILE ILE SEQRES 9 B 422 LEU LEU GLY ASP ALA ALA GLY ALA HIS PHE HIS ILE PRO SEQRES 10 B 422 PRO GLU TRP LEU THR VAL SER GLN MET SER VAL ASN SER SEQRES 11 B 422 PHE LEU ASN LEU PRO THR ALA VAL THR ASN GLU LEU ASP SEQRES 12 B 422 TRP PRO GLN LEU SER GLY THR THR GLY PHE LEU ASP SER SEQRES 13 B 422 ALA SER LYS ILE LYS GLU ASN SER ILE TYR LEU ARG LEU SEQRES 14 B 422 ARG LYS ARG ASN ARG CYS ASN HIS ARG ASP TYR GLN ASN SEQRES 15 B 422 ILE SER LYS ASN GLY ALA SER SER ARG ASN VAL LYS SER SEQRES 16 B 422 LEU ILE GLU SER LEU SER ARG ASN GLN LEU LEU ASP HIS SEQRES 17 B 422 PRO ALA ILE VAL ILE TYR ALA MET ILE GLY ASN ASP VAL SEQRES 18 B 422 CYS ASN GLY ARG LYS THR ASP PRO VAL SER ALA MET THR SEQRES 19 B 422 THR PRO GLU GLN LEU TYR ALA ASN VAL LEU LYS MET LEU SEQRES 20 B 422 GLU ALA LEU ASN SER HIS LEU PRO THR GLY SER HIS VAL SEQRES 21 B 422 ILE LEU TYR GLY LEU ALA HIS GLY ALA PHE LEU TRP ASP SEQRES 22 B 422 THR LEU HIS SER ARG TYR HIS PRO LEU GLY GLN LEU ASN SEQRES 23 B 422 LYS ASP VAL THR TYR THR GLN LEU TYR SER PHE LEU GLY SEQRES 24 B 422 CYS LEU GLN VAL SER PRO CYS PRO GLY TRP MET SER ALA SEQRES 25 B 422 ASN GLU THR LEU ARG ALA LEU THR SER GLU ARG ALA GLN SEQRES 26 B 422 GLN LEU SER GLU THR LEU ARG LYS ILE ALA ALA SER LYS SEQRES 27 B 422 LYS PHE THR ASN PHE ASN LEU PHE TYR LEU ASP PHE ALA SEQRES 28 B 422 PHE GLN GLU VAL VAL GLU GLU TRP GLN LYS MET GLY GLY SEQRES 29 B 422 GLN PRO TRP GLU LEU ILE GLU ALA VAL ASP GLY PHE HIS SEQRES 30 B 422 PRO ASN GLU VAL ALA LEU LEU LEU PHE ALA ASP GLN LEU SEQRES 31 B 422 TRP GLU LYS VAL GLN ARG GLN TRP PRO ASP VAL LEU GLY SEQRES 32 B 422 LYS GLU ASN PRO PHE ASN PRO GLN ILE GLU GLU VAL PHE SEQRES 33 B 422 GLY ASP GLN GLY GLY HIS HET NAG C 1 27 HET NAG C 2 28 HET CA B 601 1 HET CA B 602 1 HET CA B 603 1 HET NAG B 606 28 HET PO4 B 607 5 HET P6G B 608 45 HET FTT B 609 43 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM PO4 PHOSPHATE ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM FTT 3-HYDROXY-TETRADECANOIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN P6G POLYETHYLENE GLYCOL PEG400 HETSYN FTT 3-HYDROXY-MYRISTIC ACID FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 4 CA 3(CA 2+) FORMUL 8 PO4 O4 P 3- FORMUL 9 P6G C12 H26 O7 FORMUL 10 FTT C14 H28 O3 FORMUL 11 HOH *111(H2 O) HELIX 1 AA1 HIS A 37 ASN A 58 1 22 HELIX 2 AA2 THR A 60 LEU A 72 1 13 HELIX 3 AA3 VAL A 88 ILE A 94 1 7 HELIX 4 AA4 LYS A 95 ASP A 98 5 4 HELIX 5 AA5 ALA A 103 LEU A 110 1 8 HELIX 6 AA6 LYS B 170 ASN B 177 1 8 HELIX 7 AA7 PRO B 218 ALA B 223 5 6 HELIX 8 AA8 PRO B 242 GLU B 249 1 8 HELIX 9 AA9 PRO B 270 THR B 275 1 6 HELIX 10 AB1 SER B 280 LEU B 285 5 6 HELIX 11 AB2 ASN B 286 ASN B 293 1 8 HELIX 12 AB3 TRP B 297 SER B 301 5 5 HELIX 13 AB4 SER B 317 ASN B 326 1 10 HELIX 14 AB5 ARG B 327 HIS B 330 5 4 HELIX 15 AB6 ASN B 345 SER B 352 1 8 HELIX 16 AB7 GLY B 371 CYS B 375 5 5 HELIX 17 AB8 ASP B 381 MET B 386 1 6 HELIX 18 AB9 THR B 388 SER B 405 1 18 HELIX 19 AC1 GLY B 421 HIS B 429 1 9 HELIX 20 AC2 HIS B 433 GLN B 437 5 5 HELIX 21 AC3 THR B 443 LEU B 454 1 12 HELIX 22 AC4 ASN B 466 LYS B 491 1 26 HELIX 23 AC5 ALA B 504 MET B 515 1 12 HELIX 24 AC6 GLN B 518 ILE B 523 5 6 HELIX 25 AC7 ASN B 532 TRP B 551 1 20 HELIX 26 AC8 PRO B 552 LEU B 555 5 4 HELIX 27 AC9 PHE B 561 GLY B 570 1 10 SHEET 1 AA1 5 TYR B 333 ASN B 335 0 SHEET 2 AA1 5 GLY B 255 GLY B 260 1 N LEU B 258 O GLN B 334 SHEET 3 AA1 5 ALA B 363 ALA B 368 1 O ILE B 364 N GLY B 255 SHEET 4 AA1 5 SER B 411 TYR B 416 1 O HIS B 412 N VAL B 365 SHEET 5 AA1 5 PHE B 496 LEU B 501 1 O PHE B 499 N LEU B 415 SSBOND 1 CYS A 40 CYS A 113 1555 1555 2.04 SSBOND 2 CYS A 43 CYS A 107 1555 1555 2.03 SSBOND 3 CYS A 69 CYS A 82 1555 1555 2.03 SSBOND 4 CYS A 122 CYS B 453 1555 1555 2.04 SSBOND 5 CYS B 205 CYS B 229 1555 1555 2.05 SSBOND 6 CYS B 248 CYS B 328 1555 1555 2.03 SSBOND 7 CYS B 375 CYS B 459 1555 1555 2.05 LINK ND2 ASN B 206 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 466 C1 NAG B 606 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK OD1 ASP B 183 CA CA B 601 1555 1555 2.26 LINK OD1 ASP B 185 CA CA B 601 1555 1555 2.34 LINK OD2 ASP B 185 CA CA B 602 1555 1555 2.36 LINK OD1 ASP B 187 CA CA B 601 1555 1555 2.33 LINK OD2 ASP B 187 CA CA B 602 1555 1555 2.26 LINK O TYR B 189 CA CA B 601 1555 1555 2.25 LINK OD2 ASP B 204 CA CA B 601 1555 1555 2.33 LINK OD1 ASP B 204 CA CA B 602 1555 1555 2.66 LINK OD2 ASP B 204 CA CA B 602 1555 1555 2.47 LINK O ASN B 206 CA CA B 602 1555 1555 2.30 LINK OD1 ASP B 207 CA CA B 601 1555 1555 2.22 LINK O ASP B 209 CA CA B 602 1555 1555 2.50 LINK O VAL B 212 CA CA B 602 1555 1555 2.34 LINK OD2 ASP B 222 CA CA B 603 1555 1555 2.39 LINK OD2 ASP B 226 CA CA B 603 1555 1555 2.14 LINK OD1 ASN B 228 CA CA B 603 1555 1555 2.47 LINK OD1 ASN B 230 CA CA B 603 1555 1555 2.55 LINK O ILE B 232 CA CA B 603 1555 1555 2.33 LINK OE2 GLU B 244 CA CA B 603 1555 1555 2.28 CRYST1 89.578 123.199 125.918 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007942 0.00000