HEADER    PROTEIN FIBRIL                          20-JUN-17   5W7V              
TITLE     CRYOEM STRUCTURE OF THE SEGMENT, DLIIKGISVHI, ASSEMBLED INTO A TRIPLE-
TITLE    2 HELICAL FIBRIL                                                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TAR DNA-BINDING PROTEIN 43;                                
COMPND   3 CHAIN: 1, 3, 2, 6, 5, 4, 7, 0, 8;                                    
COMPND   4 FRAGMENT: RRM2 PEPTIDE (UNP RESIDUES 247-257);                       
COMPND   5 SYNONYM: TDP-43, DLIIKGISVHI;                                        
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   4 ORGANISM_COMMON: HUMAN;                                              
SOURCE   5 ORGANISM_TAXID: 9606                                                 
KEYWDS    AMYLOID, STERIC ZIPPER, PROTEIN FIBRIL                                
EXPDTA    ELECTRON MICROSCOPY                                                   
AUTHOR    E.L.GUENTHER,P.GE,D.S.EISENBERG                                       
REVDAT   6   13-MAR-24 5W7V    1       REMARK                                   
REVDAT   5   01-JAN-20 5W7V    1       REMARK                                   
REVDAT   4   18-JUL-18 5W7V    1       REMARK                                   
REVDAT   3   18-APR-18 5W7V    1       JRNL                                     
REVDAT   2   28-MAR-18 5W7V    1       JRNL                                     
REVDAT   1   14-MAR-18 5W7V    0                                                
JRNL        AUTH   E.L.GUENTHER,P.GE,H.TRINH,M.R.SAWAYA,D.CASCIO,D.R.BOYER,     
JRNL        AUTH 2 T.GONEN,Z.H.ZHOU,D.S.EISENBERG                               
JRNL        TITL   ATOMIC-LEVEL EVIDENCE FOR PACKING AND POSITIONAL AMYLOID     
JRNL        TITL 2 POLYMORPHISM BY SEGMENT FROM TDP-43 RRM2.                    
JRNL        REF    NAT. STRUCT. MOL. BIOL.       V.  25   311 2018              
JRNL        REFN                   ESSN 1545-9985                               
JRNL        PMID   29531287                                                     
JRNL        DOI    10.1038/S41594-018-0045-5                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    3.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   SOFTWARE PACKAGES      : EMAN, LEGINON, CTFFIND, RELION            
REMARK   3   RECONSTRUCTION SCHEMA  : FOURIER SPACE                             
REMARK   3                                                                      
REMARK   3 EM MAP-MODEL FITTING AND REFINEMENT                                  
REMARK   3   PDB ENTRY                    : NULL                                
REMARK   3   REFINEMENT SPACE             : REAL                                
REMARK   3   REFINEMENT PROTOCOL          : AB INITIO MODEL                     
REMARK   3   REFINEMENT TARGET            : NULL                                
REMARK   3   OVERALL ANISOTROPIC B VALUE  : NULL                                
REMARK   3                                                                      
REMARK   3 FITTING PROCEDURE : NULL                                             
REMARK   3                                                                      
REMARK   3 EM IMAGE RECONSTRUCTION STATISTICS                                   
REMARK   3   NOMINAL PIXEL SIZE (ANGSTROMS)    : NULL                           
REMARK   3   ACTUAL PIXEL SIZE  (ANGSTROMS)    : NULL                           
REMARK   3   EFFECTIVE RESOLUTION (ANGSTROMS)  : 3.800                          
REMARK   3   NUMBER OF PARTICLES               : 18818                          
REMARK   3   CTF CORRECTION METHOD             : PHASE FLIPPING AND AMPLITUDE   
REMARK   3                                       CORRECTION                     
REMARK   3                                                                      
REMARK   3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL                    
REMARK   3                                                                      
REMARK   3 OTHER DETAILS: NULL                                                  
REMARK   4                                                                      
REMARK   4 5W7V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-17.                  
REMARK 100 THE DEPOSITION ID IS D_1000228525.                                   
REMARK 245                                                                      
REMARK 245 EXPERIMENTAL DETAILS                                                 
REMARK 245   RECONSTRUCTION METHOD          : HELICAL                           
REMARK 245   SPECIMEN TYPE                  : NULL                              
REMARK 245                                                                      
REMARK 245 ELECTRON MICROSCOPE SAMPLE                                           
REMARK 245   SAMPLE TYPE                    : HELICAL ARRAY                     
REMARK 245   PARTICLE TYPE                  : HELICAL                           
REMARK 245   NAME OF SAMPLE                 : DLIIKGISVHI FIBRIL                
REMARK 245   SAMPLE CONCENTRATION (MG ML-1) : NULL                              
REMARK 245   SAMPLE SUPPORT DETAILS         : NULL                              
REMARK 245   SAMPLE VITRIFICATION DETAILS   : NULL                              
REMARK 245   SAMPLE BUFFER                  : NULL                              
REMARK 245   PH                             : 7.00                              
REMARK 245   SAMPLE DETAILS                 : NULL                              
REMARK 245                                                                      
REMARK 245 DATA ACQUISITION                                                     
REMARK 245   DATE OF EXPERIMENT                : NULL                           
REMARK 245   NUMBER OF MICROGRAPHS-IMAGES      : 610                            
REMARK 245   TEMPERATURE (KELVIN)              : NULL                           
REMARK 245   MICROSCOPE MODEL                  : FEI TITAN KRIOS                
REMARK 245   DETECTOR TYPE                     : GATAN K2 QUANTUM (4K X 4K)     
REMARK 245   MINIMUM DEFOCUS (NM)              : NULL                           
REMARK 245   MAXIMUM DEFOCUS (NM)              : NULL                           
REMARK 245   MINIMUM TILT ANGLE (DEGREES)      : NULL                           
REMARK 245   MAXIMUM TILT ANGLE (DEGREES)      : NULL                           
REMARK 245   NOMINAL CS                        : 2.70                           
REMARK 245   IMAGING MODE                      : BRIGHT FIELD                   
REMARK 245   ELECTRON DOSE (ELECTRONS NM**-2)  : 120.00                         
REMARK 245   ILLUMINATION MODE                 : FLOOD BEAM                     
REMARK 245   NOMINAL MAGNIFICATION             : NULL                           
REMARK 245   CALIBRATED MAGNIFICATION          : NULL                           
REMARK 245   SOURCE                            : FIELD EMISSION GUN             
REMARK 245   ACCELERATION VOLTAGE (KV)         : 300                            
REMARK 245   IMAGING DETAILS                   : NULL                           
REMARK 247                                                                      
REMARK 247 ELECTRON MICROSCOPY                                                  
REMARK 247  THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON          
REMARK 247  MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE              
REMARK 247  THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES           
REMARK 247  ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION         
REMARK 247  OF THE STRUCTURE FACTORS.                                           
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR                   
REMARK 300 HELICAL SYMMETRY WITH THE FOLLOWING PARAMETERS:                      
REMARK 300 ROTATION PER SUBUNIT (TWIST) = -120.44 DEGREES                       
REMARK 300 RISE PER SUBUNIT (HEIGHT) = 1.60 ANGSTROMS                           
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 3, 2, 6, 5, 4, 7, 0, 8             
REMARK 350   BIOMT1   1  0.993343 -0.115197  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.115197  0.993343  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000      -23.97000            
REMARK 350   BIOMT1   2 -0.403960  0.914776  0.000000        0.00000            
REMARK 350   BIOMT2   2 -0.914776 -0.403960  0.000000        0.00000            
REMARK 350   BIOMT3   2  0.000000  0.000000  1.000000      -22.37200            
REMARK 350   BIOMT1   3 -0.584009 -0.811747  0.000000        0.00000            
REMARK 350   BIOMT2   3  0.811747 -0.584009  0.000000        0.00000            
REMARK 350   BIOMT3   3  0.000000  0.000000  1.000000      -20.77400            
REMARK 350   BIOMT1   4  0.995738 -0.092232  0.000000        0.00000            
REMARK 350   BIOMT2   4  0.092232  0.995738  0.000000        0.00000            
REMARK 350   BIOMT3   4  0.000000  0.000000  1.000000      -19.17600            
REMARK 350   BIOMT1   5 -0.424974  0.905206  0.000000        0.00000            
REMARK 350   BIOMT2   5 -0.905206 -0.424974  0.000000        0.00000            
REMARK 350   BIOMT3   5  0.000000  0.000000  1.000000      -17.57800            
REMARK 350   BIOMT1   6 -0.565111 -0.825015  0.000000        0.00000            
REMARK 350   BIOMT2   6  0.825015 -0.565111  0.000000        0.00000            
REMARK 350   BIOMT3   6  0.000000  0.000000  1.000000      -15.98000            
REMARK 350   BIOMT1   7  0.997602 -0.069217  0.000000        0.00000            
REMARK 350   BIOMT2   7  0.069217  0.997602  0.000000        0.00000            
REMARK 350   BIOMT3   7  0.000000  0.000000  1.000000      -14.38200            
REMARK 350   BIOMT1   8 -0.445760  0.895152  0.000000        0.00000            
REMARK 350   BIOMT2   8 -0.895152 -0.445760  0.000000        0.00000            
REMARK 350   BIOMT3   8  0.000000  0.000000  1.000000      -12.78400            
REMARK 350   BIOMT1   9 -0.545912 -0.837843  0.000000        0.00000            
REMARK 350   BIOMT2   9  0.837843 -0.545912  0.000000        0.00000            
REMARK 350   BIOMT3   9  0.000000  0.000000  1.000000      -11.18600            
REMARK 350   BIOMT1  10  0.998934 -0.046165  0.000000        0.00000            
REMARK 350   BIOMT2  10  0.046165  0.998934  0.000000        0.00000            
REMARK 350   BIOMT3  10  0.000000  0.000000  1.000000       -9.58800            
REMARK 350   BIOMT1  11 -0.466309  0.884622  0.000000        0.00000            
REMARK 350   BIOMT2  11 -0.884622 -0.466309  0.000000        0.00000            
REMARK 350   BIOMT3  11  0.000000  0.000000  1.000000       -7.99000            
REMARK 350   BIOMT1  12 -0.526422 -0.850224  0.000000        0.00000            
REMARK 350   BIOMT2  12  0.850224 -0.526422  0.000000        0.00000            
REMARK 350   BIOMT3  12  0.000000  0.000000  1.000000       -6.39200            
REMARK 350   BIOMT1  13  0.999733 -0.023089  0.000000        0.00000            
REMARK 350   BIOMT2  13  0.023089  0.999733  0.000000        0.00000            
REMARK 350   BIOMT3  13  0.000000  0.000000  1.000000       -4.79400            
REMARK 350   BIOMT1  14 -0.486610  0.873619  0.000000        0.00000            
REMARK 350   BIOMT2  14 -0.873619 -0.486610  0.000000        0.00000            
REMARK 350   BIOMT3  14  0.000000  0.000000  1.000000       -3.19600            
REMARK 350   BIOMT1  15 -0.506651 -0.862151  0.000000        0.00000            
REMARK 350   BIOMT2  15  0.862151 -0.506651  0.000000        0.00000            
REMARK 350   BIOMT3  15  0.000000  0.000000  1.000000       -1.59800            
REMARK 350   BIOMT1  16  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2  16  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3  16  0.000000  0.000000  1.000000        0.00000            
REMARK 350   BIOMT1  17 -0.506651  0.862151  0.000000        0.00000            
REMARK 350   BIOMT2  17 -0.862151 -0.506651  0.000000        0.00000            
REMARK 350   BIOMT3  17  0.000000  0.000000  1.000000        1.59800            
REMARK 350   BIOMT1  18 -0.486610 -0.873619  0.000000        0.00000            
REMARK 350   BIOMT2  18  0.873619 -0.486610  0.000000        0.00000            
REMARK 350   BIOMT3  18  0.000000  0.000000  1.000000        3.19600            
REMARK 350   BIOMT1  19  0.999733  0.023089  0.000000        0.00000            
REMARK 350   BIOMT2  19 -0.023089  0.999733  0.000000        0.00000            
REMARK 350   BIOMT3  19  0.000000  0.000000  1.000000        4.79400            
REMARK 350   BIOMT1  20 -0.526422  0.850224  0.000000        0.00000            
REMARK 350   BIOMT2  20 -0.850224 -0.526422  0.000000        0.00000            
REMARK 350   BIOMT3  20  0.000000  0.000000  1.000000        6.39200            
REMARK 350   BIOMT1  21 -0.466309 -0.884622  0.000000        0.00000            
REMARK 350   BIOMT2  21  0.884622 -0.466309  0.000000        0.00000            
REMARK 350   BIOMT3  21  0.000000  0.000000  1.000000        7.99000            
REMARK 350   BIOMT1  22  0.998934  0.046165  0.000000        0.00000            
REMARK 350   BIOMT2  22 -0.046165  0.998934  0.000000        0.00000            
REMARK 350   BIOMT3  22  0.000000  0.000000  1.000000        9.58800            
REMARK 350   BIOMT1  23 -0.545912  0.837843  0.000000        0.00000            
REMARK 350   BIOMT2  23 -0.837843 -0.545912  0.000000        0.00000            
REMARK 350   BIOMT3  23  0.000000  0.000000  1.000000       11.18600            
REMARK 350   BIOMT1  24 -0.445760 -0.895152  0.000000        0.00000            
REMARK 350   BIOMT2  24  0.895152 -0.445760  0.000000        0.00000            
REMARK 350   BIOMT3  24  0.000000  0.000000  1.000000       12.78400            
REMARK 350   BIOMT1  25  0.997602  0.069217  0.000000        0.00000            
REMARK 350   BIOMT2  25 -0.069217  0.997602  0.000000        0.00000            
REMARK 350   BIOMT3  25  0.000000  0.000000  1.000000       14.38200            
REMARK 350   BIOMT1  26 -0.565111  0.825015  0.000000        0.00000            
REMARK 350   BIOMT2  26 -0.825015 -0.565111  0.000000        0.00000            
REMARK 350   BIOMT3  26  0.000000  0.000000  1.000000       15.98000            
REMARK 350   BIOMT1  27 -0.424974 -0.905206  0.000000        0.00000            
REMARK 350   BIOMT2  27  0.905206 -0.424974  0.000000        0.00000            
REMARK 350   BIOMT3  27  0.000000  0.000000  1.000000       17.57800            
REMARK 350   BIOMT1  28  0.995738  0.092232  0.000000        0.00000            
REMARK 350   BIOMT2  28 -0.092232  0.995738  0.000000        0.00000            
REMARK 350   BIOMT3  28  0.000000  0.000000  1.000000       19.17600            
REMARK 350   BIOMT1  29 -0.584009  0.811747  0.000000        0.00000            
REMARK 350   BIOMT2  29 -0.811747 -0.584009  0.000000        0.00000            
REMARK 350   BIOMT3  29  0.000000  0.000000  1.000000       20.77400            
REMARK 350   BIOMT1  30 -0.403960 -0.914776  0.000000        0.00000            
REMARK 350   BIOMT2  30  0.914776 -0.403960  0.000000        0.00000            
REMARK 350   BIOMT3  30  0.000000  0.000000  1.000000       22.37200            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ILE 0     7                                                      
REMARK 465     SER 0     8                                                      
REMARK 465     VAL 0     9                                                      
REMARK 465     HIS 0    10                                                      
REMARK 465     ILE 0    11                                                      
REMARK 465     GLY 8     6                                                      
REMARK 465     ILE 8     7                                                      
REMARK 465     SER 8     8                                                      
REMARK 465     VAL 8     9                                                      
REMARK 465     HIS 8    10                                                      
REMARK 465     ILE 8    11                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ILE 4   7      -64.89   -101.51                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: EMD-8781   RELATED DB: EMDB                              
REMARK 900 CRYOEM STRUCTURE OF THE SEGMENT, DLIIKGISVHI, ASSEMBLED INTO A       
REMARK 900 TRIPLE-HELICAL FIBRIL                                                
DBREF  5W7V 1    1    11  UNP    Q13148   TADBP_HUMAN    247    257             
DBREF  5W7V 3    1    11  UNP    Q13148   TADBP_HUMAN    247    257             
DBREF  5W7V 2    1    11  UNP    Q13148   TADBP_HUMAN    247    257             
DBREF  5W7V 6    1    11  UNP    Q13148   TADBP_HUMAN    247    257             
DBREF  5W7V 5    1    11  UNP    Q13148   TADBP_HUMAN    247    257             
DBREF  5W7V 4    1    11  UNP    Q13148   TADBP_HUMAN    247    257             
DBREF  5W7V 7    1    11  UNP    Q13148   TADBP_HUMAN    247    257             
DBREF  5W7V 0    1    11  UNP    Q13148   TADBP_HUMAN    247    257             
DBREF  5W7V 8    1    11  UNP    Q13148   TADBP_HUMAN    247    257             
SEQRES   1 1   11  ASP LEU ILE ILE LYS GLY ILE SER VAL HIS ILE                  
SEQRES   1 3   11  ASP LEU ILE ILE LYS GLY ILE SER VAL HIS ILE                  
SEQRES   1 2   11  ASP LEU ILE ILE LYS GLY ILE SER VAL HIS ILE                  
SEQRES   1 6   11  ASP LEU ILE ILE LYS GLY ILE SER VAL HIS ILE                  
SEQRES   1 5   11  ASP LEU ILE ILE LYS GLY ILE SER VAL HIS ILE                  
SEQRES   1 4   11  ASP LEU ILE ILE LYS GLY ILE SER VAL HIS ILE                  
SEQRES   1 7   11  ASP LEU ILE ILE LYS GLY ILE SER VAL HIS ILE                  
SEQRES   1 0   11  ASP LEU ILE ILE LYS GLY ILE SER VAL HIS ILE                  
SEQRES   1 8   11  ASP LEU ILE ILE LYS GLY ILE SER VAL HIS ILE                  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1                      
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000