HEADER TRANSCRIPTION 22-JUN-17 5W8Y TITLE SOLUTION STRUCTURE OF XPH1, A HYBRID SEQUENCE OF XFASO 1 AND PFL 6, TITLE 2 TWO CRO PROTEINS WITH DIFFERENT FOLDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN XPH1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XYLELLA FASTIDIOSA SUBSP. SANDYI ANN-1; SOURCE 3 ORGANISM_TAXID: 155920; SOURCE 4 GENE: D934_07735, D934_08955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS HELIX-TURN-HELIX, STRUCTURAL EVOLUTION, CONFORMATIONAL SWITCH, KEYWDS 2 METAMORPHIC PROTEIN, DISULFIDE BOND, TRANSCRIPTION FACTOR, KEYWDS 3 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.K.KUMIROV,E.M.DYKSTRA,M.H.CORDES REVDAT 6 16-OCT-24 5W8Y 1 REMARK REVDAT 5 14-JUN-23 5W8Y 1 REMARK REVDAT 4 01-JAN-20 5W8Y 1 REMARK REVDAT 3 07-NOV-18 5W8Y 1 JRNL REVDAT 2 08-AUG-18 5W8Y 1 JRNL REVDAT 1 11-JUL-18 5W8Y 0 JRNL AUTH V.K.KUMIROV,E.M.DYKSTRA,B.M.HALL,W.J.ANDERSON,T.N.SZYSZKA, JRNL AUTH 2 M.H.J.CORDES JRNL TITL MULTISTEP MUTATIONAL TRANSFORMATION OF A PROTEIN FOLD JRNL TITL 2 THROUGH STRUCTURAL INTERMEDIATES. JRNL REF PROTEIN SCI. V. 27 1767 2018 JRNL REFN ESSN 1469-896X JRNL PMID 30051937 JRNL DOI 10.1002/PRO.3488 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: EXPLICIT WATER REFINEMENT OF THE LOWEST REMARK 3 ENERGY 20 STRUCTURES WAS PERFORMED USING CNS REMARK 4 REMARK 4 5W8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000227231. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-13C; U-15N] XPH1, 50 REMARK 210 MM NA- POTASSIUM PHOSPHATE, 150 REMARK 210 MM NA- POTASSIUM CHLORIDE, 0.01 % REMARK 210 NA- SODIUM AZIDE, 0.1 MM NA- REMARK 210 DSS, 90% H2O/10% D2O; 0.4 MM [U- REMARK 210 13C; U-15N] XPH1, 50 MM NA- REMARK 210 POTASSIUM PHOSPHATE, 150 MM NA- REMARK 210 POTASSIUM CHLORIDE, 0.01 % NA- REMARK 210 SODIUM AZIDE, 0.1 MM NA- DSS, REMARK 210 100% D2O; 0.6 MM [U-13C; U-15N] REMARK 210 XPH1, 50 MM NA- POTASSIUM REMARK 210 PHOSPHATE, 150 MM NA- POTASSIUM REMARK 210 CHLORIDE, 0.01 % NA- SODIUM REMARK 210 AZIDE, 0.1 MM NA- DSS, 90% H2O/ REMARK 210 10% D2O; 1.8 MM [U-10% 13C] XPH1, REMARK 210 50 MM NA- POTASSIUM PHOSPHATE, REMARK 210 150 MM NA- POTASSIUM CHLORIDE, REMARK 210 0.01 % NA- SODIUM AZIDE, 0.1 MM REMARK 210 NA- DSS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D HNCO; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY, NMRPIPE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS USING REMARK 210 CYANA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER CONFIRMED BY SEC (GEL FILTRATION) AND BY NMR (T2 REMARK 300 RELAXATION). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 66 REMARK 465 GLU A 67 REMARK 465 HIS A 68 REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 HIS A 72 REMARK 465 HIS A 73 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 41 -28.33 -166.05 REMARK 500 1 ASP A 61 -72.21 -91.02 REMARK 500 1 PHE A 63 -78.16 61.77 REMARK 500 2 ARG A 41 -33.18 -134.91 REMARK 500 2 ARG A 59 156.48 -46.81 REMARK 500 2 PRO A 60 1.88 -67.13 REMARK 500 2 PHE A 63 -168.37 -109.57 REMARK 500 3 ARG A 41 -27.26 -146.50 REMARK 500 3 ASP A 50 46.37 -81.20 REMARK 500 3 ASP A 61 -75.79 -104.84 REMARK 500 3 PHE A 63 54.16 -99.54 REMARK 500 4 VAL A 62 95.11 -57.42 REMARK 500 5 ARG A 41 -22.29 -159.80 REMARK 500 6 ARG A 41 -29.22 -146.91 REMARK 500 7 PRO A 38 170.71 -59.56 REMARK 500 7 ARG A 41 -22.08 -162.20 REMARK 500 7 THR A 49 63.27 -104.48 REMARK 500 7 PRO A 60 22.03 -66.76 REMARK 500 8 THR A 49 60.20 -108.46 REMARK 500 8 ASP A 50 47.54 -74.60 REMARK 500 9 ASP A 50 -66.35 -28.59 REMARK 500 9 ASP A 61 -73.69 -107.63 REMARK 500 10 ARG A 41 -29.53 -144.83 REMARK 500 10 THR A 49 41.55 -108.97 REMARK 500 10 ASP A 50 57.64 -41.79 REMARK 500 10 VAL A 62 99.83 -61.83 REMARK 500 11 ARG A 41 -42.03 -152.31 REMARK 500 12 THR A 49 58.81 -112.98 REMARK 500 12 ASP A 50 43.52 -80.79 REMARK 500 12 GLU A 54 96.15 -69.03 REMARK 500 12 ASP A 61 36.55 -82.23 REMARK 500 12 VAL A 62 81.83 63.29 REMARK 500 13 ARG A 41 -26.82 -162.67 REMARK 500 13 PRO A 60 20.49 -76.00 REMARK 500 13 ASP A 61 -165.44 57.44 REMARK 500 14 ARG A 41 -34.62 -149.12 REMARK 500 14 THR A 49 60.93 -111.08 REMARK 500 14 ASP A 50 46.26 -76.10 REMARK 500 14 VAL A 62 113.32 72.26 REMARK 500 15 PRO A 38 170.26 -57.30 REMARK 500 15 ARG A 41 -32.57 -132.84 REMARK 500 15 THR A 49 59.40 -108.76 REMARK 500 15 ASP A 50 43.23 -85.39 REMARK 500 15 PRO A 60 93.94 -64.59 REMARK 500 16 ASP A 50 -51.71 -29.43 REMARK 500 16 ASP A 61 -81.69 -70.09 REMARK 500 17 ARG A 41 -32.08 -154.50 REMARK 500 19 THR A 49 57.47 -109.69 REMARK 500 19 ASP A 50 45.41 -75.95 REMARK 500 19 ASP A 61 -61.46 -126.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30309 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF XPH1, A HYBRID SEQUENCE OF XFASO 1 AND PFL 6, REMARK 900 TWO CRO PROTEINS WITH DIFFERENT FOLDS DBREF1 5W8Y A 1 65 UNP A0A060H7L8_XYLFS DBREF2 5W8Y A A0A060H7L8 1 65 SEQADV 5W8Y ALA A 20 UNP A0A060H7L SER 20 ENGINEERED MUTATION SEQADV 5W8Y ASN A 24 UNP A0A060H7L ARG 24 ENGINEERED MUTATION SEQADV 5W8Y GLN A 30 UNP A0A060H7L ASN 30 ENGINEERED MUTATION SEQADV 5W8Y GLY A 40 UNP A0A060H7L GLU 40 ENGINEERED MUTATION SEQADV 5W8Y LEU A 47 UNP A0A060H7L ARG 47 ENGINEERED MUTATION SEQADV 5W8Y TYR A 48 UNP A0A060H7L VAL 48 ENGINEERED MUTATION SEQADV 5W8Y ASP A 50 UNP A0A060H7L ASN 50 ENGINEERED MUTATION SEQADV 5W8Y ARG A 52 UNP A0A060H7L ALA 52 ENGINEERED MUTATION SEQADV 5W8Y GLU A 54 UNP A0A060H7L ILE 54 ENGINEERED MUTATION SEQADV 5W8Y LEU A 66 UNP A0A060H7L EXPRESSION TAG SEQADV 5W8Y GLU A 67 UNP A0A060H7L EXPRESSION TAG SEQADV 5W8Y HIS A 68 UNP A0A060H7L EXPRESSION TAG SEQADV 5W8Y HIS A 69 UNP A0A060H7L EXPRESSION TAG SEQADV 5W8Y HIS A 70 UNP A0A060H7L EXPRESSION TAG SEQADV 5W8Y HIS A 71 UNP A0A060H7L EXPRESSION TAG SEQADV 5W8Y HIS A 72 UNP A0A060H7L EXPRESSION TAG SEQADV 5W8Y HIS A 73 UNP A0A060H7L EXPRESSION TAG SEQRES 1 A 73 MET ASN ALA ILE ASP ILE ALA ILE ASN LYS LEU GLY SER SEQRES 2 A 73 VAL SER ALA LEU ALA ALA ALA LEU GLY VAL ASN GLN SER SEQRES 3 A 73 ALA ILE SER GLN TRP ARG ALA ARG GLY ARG VAL PRO ALA SEQRES 4 A 73 GLY ARG CYS ILE ASP ILE GLU LEU TYR THR ASP GLY ARG SEQRES 5 A 73 VAL GLU CYS ARG GLU LEU ARG PRO ASP VAL PHE GLY ALA SEQRES 6 A 73 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ASN A 2 GLY A 12 1 11 HELIX 2 AA2 SER A 13 GLY A 22 1 10 HELIX 3 AA3 ASN A 24 GLY A 35 1 12 HELIX 4 AA4 ARG A 41 THR A 49 1 9 SSBOND 1 CYS A 42 CYS A 55 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 981 ALA A 65 ENDMDL MODEL 2 TER 981 ALA A 65 ENDMDL MODEL 3 TER 981 ALA A 65 ENDMDL MODEL 4 TER 981 ALA A 65 ENDMDL MODEL 5 TER 981 ALA A 65 ENDMDL MODEL 6 TER 981 ALA A 65 ENDMDL MODEL 7 TER 981 ALA A 65 ENDMDL MODEL 8 TER 981 ALA A 65 ENDMDL MODEL 9 TER 981 ALA A 65 ENDMDL MODEL 10 TER 981 ALA A 65 ENDMDL MODEL 11 TER 981 ALA A 65 ENDMDL MODEL 12 TER 981 ALA A 65 ENDMDL MODEL 13 TER 981 ALA A 65 ENDMDL MODEL 14 TER 981 ALA A 65 ENDMDL MODEL 15 TER 981 ALA A 65 ENDMDL MODEL 16 TER 981 ALA A 65 ENDMDL MODEL 17 TER 981 ALA A 65 ENDMDL MODEL 18 TER 981 ALA A 65 ENDMDL MODEL 19 TER 981 ALA A 65 ENDMDL MODEL 20 TER 981 ALA A 65 ENDMDL CONECT 612 815 CONECT 815 612 MASTER 176 0 0 4 0 0 0 6 486 1 2 6 END