HEADER ANTIVIRAL PROTEIN 22-JUN-17 5W9A TITLE THE STRUCTURE OF THE TRIM5ALPHA BBOX- COILED COIL IN COMPLEX LC3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPARTITE MOTIF-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUE 88-296; COMPND 5 SYNONYM: RING-TYPE E3 UBIQUITIN TRANSFERASE TRIM5,TRIM5ALPHA; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 2-119; COMPND 13 SYNONYM: AUTOPHAGY-RELATED PROTEIN LC3 B,AUTOPHAGY-RELATED UBIQUITIN- COMPND 14 LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2,MAP1A/MAP1B COMPND 15 LIGHT CHAIN 3 B,MAP1A/MAP1B LC3 B,MICROTUBULE-ASSOCIATED PROTEIN 1 COMPND 16 LIGHT CHAIN 3 BETA; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MACAQUE; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 GENE: TRIM5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MAP1LC3B, MAP1ALC3; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY TRIM5ALPHA LC3B ANTIVIRAL PROTEIN, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.R.KEOWN,D.C.GOLDSTONE REVDAT 4 04-OCT-23 5W9A 1 REMARK REVDAT 3 12-DEC-18 5W9A 1 JRNL REVDAT 2 17-OCT-18 5W9A 1 COMPND JRNL REVDAT 1 10-OCT-18 5W9A 0 JRNL AUTH J.R.KEOWN,M.M.BLACK,A.FERRON,M.YAP,M.J.BARNETT,F.G.PEARCE, JRNL AUTH 2 J.P.STOYE,D.C.GOLDSTONE JRNL TITL A HELICAL LC3-INTERACTING REGION MEDIATES THE INTERACTION JRNL TITL 2 BETWEEN THE RETROVIRAL RESTRICTION FACTOR TRIM5 ALPHA AND JRNL TITL 3 MAMMALIAN AUTOPHAGY-RELATED ATG8 PROTEINS. JRNL REF J. BIOL. CHEM. V. 293 18378 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30282803 JRNL DOI 10.1074/JBC.RA118.004202 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 62.3 REMARK 3 NUMBER OF REFLECTIONS : 24265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9150 - 5.6940 0.99 4321 228 0.2202 0.2396 REMARK 3 2 5.6940 - 4.5214 1.00 4135 217 0.2383 0.2512 REMARK 3 3 4.5214 - 3.9504 0.94 3861 204 0.2614 0.3044 REMARK 3 4 3.9504 - 3.5894 0.81 3309 174 0.2970 0.2773 REMARK 3 5 3.5894 - 3.3323 0.68 2762 145 0.3497 0.3582 REMARK 3 6 3.3323 - 3.1359 0.49 1983 105 0.3580 0.3291 REMARK 3 7 3.1359 - 2.9789 0.35 1431 76 0.3744 0.3607 REMARK 3 8 2.9789 - 2.8492 0.23 923 48 0.4213 0.4141 REMARK 3 9 2.8492 - 2.7396 0.08 326 17 0.4197 0.3321 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 95 THROUGH 112 OR REMARK 3 (RESID 113 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 114 REMARK 3 THROUGH 123 OR (RESID 124 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 125 THROUGH 142 OR (RESID 143 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG )) OR RESID 144 REMARK 3 THROUGH 152 OR (RESID 153 THROUGH 154 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 155 THROUGH 165 OR REMARK 3 (RESID 166 THROUGH 167 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 168 THROUGH 172 OR (RESID 173 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 174 THROUGH 237 REMARK 3 OR (RESID 238 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 239 THROUGH 257 OR (RESID 258 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 259 THROUGH 271 OR (RESID 272 REMARK 3 THROUGH 273 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 274 THROUGH 277 OR RESID 280 THROUGH 287)) REMARK 3 SELECTION : (CHAIN B AND (RESID 95 THROUGH 109 OR REMARK 3 (RESID 110 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 111 REMARK 3 THROUGH 120 OR (RESID 121 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 122 THROUGH 128 OR (RESID 129 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 130 THROUGH 137 REMARK 3 OR (RESID 138 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 139 THROUGH 153 OR (RESID 154 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 155 THROUGH 156 OR (RESID 157 REMARK 3 THROUGH 158 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 159 OR (RESID 160 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 161 THROUGH 206 OR (RESID 207 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 208 THROUGH 245 OR REMARK 3 (RESID 246 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 247 THROUGH 272 OR (RESID 273 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 274 THROUGH 287)) REMARK 3 ATOM PAIRS NUMBER : 1776 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN C AND (RESID 4 THROUGH 42 OR REMARK 3 (RESID 43 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 44 REMARK 3 THROUGH 79 OR (RESID 80 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 81 THROUGH 85 OR (RESID 86 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 87 THROUGH 99 OR REMARK 3 (RESID 100 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 101 REMARK 3 THROUGH 116)) REMARK 3 SELECTION : (CHAIN D AND ((RESID 4 THROUGH 5 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 6 THROUGH 7 OR (RESID REMARK 3 8 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 9 THROUGH REMARK 3 24 OR (RESID 25 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 26 THROUGH 47 OR (RESID 48 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 49 THROUGH 115 OR (RESID 116 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )))) REMARK 3 ATOM PAIRS NUMBER : 1091 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.25 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 3.22 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24308 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 40.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 1.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 4TN3, 3WAO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, 0.1 M TRIS PH8, 20% PEG REMARK 280 6,000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.65950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.08200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.65950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.08200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU D 117 REMARK 465 PHE B 278 REMARK 465 ARG B 279 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 129 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 138 CG CD OE1 NE2 REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 ARG A 231 CG CD NE CZ NH1 NH2 REMARK 470 MET A 246 SD CE REMARK 470 ASN A 273 CG OD1 ND2 REMARK 470 ARG A 275 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 278 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 282 CG OD1 OD2 REMARK 470 GLU C 4 CG CD OE1 OE2 REMARK 470 LYS C 5 CG CD CE NZ REMARK 470 LYS C 8 CG CD CE NZ REMARK 470 GLU C 25 CG CD OE1 OE2 REMARK 470 LYS C 39 CG CD CE NZ REMARK 470 ASP C 48 CG OD1 OD2 REMARK 470 ARG C 68 CG CD NE CZ NH1 NH2 REMARK 470 MET C 88 CG SD CE REMARK 470 GLN C 116 CG CD OE1 NE2 REMARK 470 GLU C 117 CG CD OE1 OE2 REMARK 470 LYS D 39 CG CD CE NZ REMARK 470 GLN D 43 CG CD OE1 NE2 REMARK 470 ASP D 48 OD1 OD2 REMARK 470 ARG D 68 CG CD NE CZ NH1 NH2 REMARK 470 PHE D 80 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS D 86 CG ND1 CD2 CE1 NE2 REMARK 470 MET D 88 CG SD CE REMARK 470 GLU D 100 CG CD OE1 OE2 REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 ARG B 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 143 CD CE NZ REMARK 470 ARG B 152 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 153 CG CD OE1 NE2 REMARK 470 LYS B 154 CE NZ REMARK 470 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 ARG B 231 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 272 CG CD CE NZ REMARK 470 ARG B 275 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 276 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 282 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 261 37.00 -85.66 REMARK 500 ARG A 276 80.37 -156.36 REMARK 500 PRO A 281 52.49 -66.64 REMARK 500 GLN C 72 70.73 56.01 REMARK 500 MET C 88 43.12 -150.18 REMARK 500 SER C 115 -69.83 -151.93 REMARK 500 GLN D 72 71.26 55.03 REMARK 500 MET D 88 45.38 -147.71 REMARK 500 SER D 115 -8.81 -157.60 REMARK 500 ASN B 261 37.23 -86.65 REMARK 500 ARG B 276 -115.64 -90.58 REMARK 500 PRO B 281 53.31 -67.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 116 SG 143.3 REMARK 620 3 CYS A 119 SG 118.0 98.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 108 SG REMARK 620 2 ASP A 111 OD2 116.4 REMARK 620 3 HIS A 125 ND1 148.5 79.1 REMARK 620 4 HIS A 128 ND1 86.7 78.6 124.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 HIS B 100 ND1 112.7 REMARK 620 3 CYS B 116 SG 135.6 108.6 REMARK 620 4 CYS B 119 SG 111.8 77.4 92.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 108 SG REMARK 620 2 ASP B 111 OD2 120.1 REMARK 620 3 HIS B 125 ND1 126.6 64.1 REMARK 620 4 HIS B 128 ND1 103.9 101.7 128.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 DBREF 5W9A A 95 287 UNP Q0PF16 TRIM5_MACMU 95 287 DBREF 5W9A C 4 117 UNP Q9GZQ8 MLP3B_HUMAN 4 117 DBREF 5W9A D 4 117 UNP Q9GZQ8 MLP3B_HUMAN 4 117 DBREF 5W9A B 95 287 UNP Q0PF16 TRIM5_MACMU 95 287 SEQADV 5W9A LYS A 120 UNP Q0PF16 GLU 120 ENGINEERED MUTATION SEQADV 5W9A ASP A 121 UNP Q0PF16 ARG 121 ENGINEERED MUTATION SEQADV 5W9A LYS B 120 UNP Q0PF16 GLU 120 ENGINEERED MUTATION SEQADV 5W9A ASP B 121 UNP Q0PF16 ARG 121 ENGINEERED MUTATION SEQRES 1 A 193 ASP HIS CYS ALA ARG HIS GLY GLU LYS LEU LEU LEU PHE SEQRES 2 A 193 CYS GLN GLU ASP SER LYS VAL ILE CYS TRP LEU CYS LYS SEQRES 3 A 193 ASP SER GLN GLU HIS ARG GLY HIS HIS THR PHE LEU MET SEQRES 4 A 193 GLU GLU VAL ALA GLN GLU TYR HIS VAL LYS LEU GLN THR SEQRES 5 A 193 ALA LEU GLU MET LEU ARG GLN LYS GLN GLN GLU ALA GLU SEQRES 6 A 193 LYS LEU GLU ALA ASP ILE ARG GLU GLU LYS ALA SER TRP SEQRES 7 A 193 LYS ILE GLN ILE ASP TYR ASP LYS THR ASN VAL SER ALA SEQRES 8 A 193 ASP PHE GLU GLN LEU ARG GLU ILE LEU ASP TRP GLU GLU SEQRES 9 A 193 SER ASN GLU LEU GLN ASN LEU GLU LYS GLU GLU GLU ASP SEQRES 10 A 193 ILE LEU LYS SER LEU THR LYS SER GLU THR GLU MET VAL SEQRES 11 A 193 GLN GLN THR GLN TYR MET ARG GLU LEU ILE SER GLU LEU SEQRES 12 A 193 GLU HIS ARG LEU GLN GLY SER MET MET ASP LEU LEU GLN SEQRES 13 A 193 GLY VAL ASP GLY ILE ILE LYS ARG ILE GLU ASN MET THR SEQRES 14 A 193 LEU LYS LYS PRO LYS THR PHE HIS LYS ASN GLN ARG ARG SEQRES 15 A 193 VAL PHE ARG ALA PRO ASP LEU LYS GLY MET LEU SEQRES 1 C 114 GLU LYS THR PHE LYS GLN ARG ARG THR PHE GLU GLN ARG SEQRES 2 C 114 VAL GLU ASP VAL ARG LEU ILE ARG GLU GLN HIS PRO THR SEQRES 3 C 114 LYS ILE PRO VAL ILE ILE GLU ARG TYR LYS GLY GLU LYS SEQRES 4 C 114 GLN LEU PRO VAL LEU ASP LYS THR LYS PHE LEU VAL PRO SEQRES 5 C 114 ASP HIS VAL ASN MET SER GLU LEU ILE LYS ILE ILE ARG SEQRES 6 C 114 ARG ARG LEU GLN LEU ASN ALA ASN GLN ALA PHE PHE LEU SEQRES 7 C 114 LEU VAL ASN GLY HIS SER MET VAL SER VAL SER THR PRO SEQRES 8 C 114 ILE SER GLU VAL TYR GLU SER GLU LYS ASP GLU ASP GLY SEQRES 9 C 114 PHE LEU TYR MET VAL TYR ALA SER GLN GLU SEQRES 1 D 114 GLU LYS THR PHE LYS GLN ARG ARG THR PHE GLU GLN ARG SEQRES 2 D 114 VAL GLU ASP VAL ARG LEU ILE ARG GLU GLN HIS PRO THR SEQRES 3 D 114 LYS ILE PRO VAL ILE ILE GLU ARG TYR LYS GLY GLU LYS SEQRES 4 D 114 GLN LEU PRO VAL LEU ASP LYS THR LYS PHE LEU VAL PRO SEQRES 5 D 114 ASP HIS VAL ASN MET SER GLU LEU ILE LYS ILE ILE ARG SEQRES 6 D 114 ARG ARG LEU GLN LEU ASN ALA ASN GLN ALA PHE PHE LEU SEQRES 7 D 114 LEU VAL ASN GLY HIS SER MET VAL SER VAL SER THR PRO SEQRES 8 D 114 ILE SER GLU VAL TYR GLU SER GLU LYS ASP GLU ASP GLY SEQRES 9 D 114 PHE LEU TYR MET VAL TYR ALA SER GLN GLU SEQRES 1 B 193 ASP HIS CYS ALA ARG HIS GLY GLU LYS LEU LEU LEU PHE SEQRES 2 B 193 CYS GLN GLU ASP SER LYS VAL ILE CYS TRP LEU CYS LYS SEQRES 3 B 193 ASP SER GLN GLU HIS ARG GLY HIS HIS THR PHE LEU MET SEQRES 4 B 193 GLU GLU VAL ALA GLN GLU TYR HIS VAL LYS LEU GLN THR SEQRES 5 B 193 ALA LEU GLU MET LEU ARG GLN LYS GLN GLN GLU ALA GLU SEQRES 6 B 193 LYS LEU GLU ALA ASP ILE ARG GLU GLU LYS ALA SER TRP SEQRES 7 B 193 LYS ILE GLN ILE ASP TYR ASP LYS THR ASN VAL SER ALA SEQRES 8 B 193 ASP PHE GLU GLN LEU ARG GLU ILE LEU ASP TRP GLU GLU SEQRES 9 B 193 SER ASN GLU LEU GLN ASN LEU GLU LYS GLU GLU GLU ASP SEQRES 10 B 193 ILE LEU LYS SER LEU THR LYS SER GLU THR GLU MET VAL SEQRES 11 B 193 GLN GLN THR GLN TYR MET ARG GLU LEU ILE SER GLU LEU SEQRES 12 B 193 GLU HIS ARG LEU GLN GLY SER MET MET ASP LEU LEU GLN SEQRES 13 B 193 GLY VAL ASP GLY ILE ILE LYS ARG ILE GLU ASN MET THR SEQRES 14 B 193 LEU LYS LYS PRO LYS THR PHE HIS LYS ASN GLN ARG ARG SEQRES 15 B 193 VAL PHE ARG ALA PRO ASP LEU LYS GLY MET LEU HET ZN A 301 1 HET ZN A 302 1 HET ZN B 301 1 HET ZN B 302 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) HELIX 1 AA1 CYS A 116 SER A 122 1 7 HELIX 2 AA2 GLN A 123 ARG A 126 5 4 HELIX 3 AA3 MET A 133 GLY A 243 1 111 HELIX 4 AA4 SER A 244 GLN A 250 1 7 HELIX 5 AA5 GLY A 251 ASN A 261 1 11 HELIX 6 AA6 PRO A 281 LEU A 287 1 7 HELIX 7 AA7 THR C 6 ARG C 11 1 6 HELIX 8 AA8 THR C 12 HIS C 27 1 16 HELIX 9 AA9 ASN C 59 LEU C 71 1 13 HELIX 10 AB1 PRO C 94 LYS C 103 1 10 HELIX 11 AB2 THR D 6 ARG D 11 1 6 HELIX 12 AB3 THR D 12 HIS D 27 1 16 HELIX 13 AB4 ASN D 59 LEU D 71 1 13 HELIX 14 AB5 PRO D 94 LYS D 103 1 10 HELIX 15 AB6 CYS B 116 SER B 122 1 7 HELIX 16 AB7 MET B 133 GLY B 243 1 111 HELIX 17 AB8 SER B 244 GLN B 250 1 7 HELIX 18 AB9 GLY B 251 ASN B 261 1 11 HELIX 19 AC1 PRO B 281 LEU B 287 1 7 SHEET 1 AA1 2 LEU A 106 CYS A 108 0 SHEET 2 AA1 2 THR A 130 LEU A 132 -1 O PHE A 131 N PHE A 107 SHEET 1 AA2 4 LYS C 51 PRO C 55 0 SHEET 2 AA2 4 LYS C 30 ARG C 37 -1 N VAL C 33 O PHE C 52 SHEET 3 AA2 4 LEU C 109 ALA C 114 1 O LEU C 109 N ILE C 34 SHEET 4 AA2 4 PHE C 80 VAL C 83 -1 N LEU C 82 O VAL C 112 SHEET 1 AA3 4 LYS D 51 PRO D 55 0 SHEET 2 AA3 4 LYS D 30 ARG D 37 -1 N VAL D 33 O PHE D 52 SHEET 3 AA3 4 LEU D 109 ALA D 114 1 O MET D 111 N ILE D 34 SHEET 4 AA3 4 PHE D 80 VAL D 83 -1 N PHE D 80 O ALA D 114 SHEET 1 AA4 3 VAL B 114 ILE B 115 0 SHEET 2 AA4 3 LEU B 106 CYS B 108 -1 N LEU B 106 O ILE B 115 SHEET 3 AA4 3 THR B 130 LEU B 132 -1 O PHE B 131 N PHE B 107 LINK SG CYS A 97 ZN ZN A 301 1555 1555 2.41 LINK SG CYS A 108 ZN ZN A 302 1555 1555 2.43 LINK OD2 ASP A 111 ZN ZN A 302 1555 1555 1.99 LINK SG CYS A 116 ZN ZN A 301 1555 1555 2.36 LINK SG CYS A 119 ZN ZN A 301 1555 1555 2.47 LINK ND1 HIS A 125 ZN ZN A 302 1555 1555 2.30 LINK ND1 HIS A 128 ZN ZN A 302 1555 1555 2.68 LINK SG CYS B 97 ZN ZN B 301 1555 1555 2.56 LINK ND1 HIS B 100 ZN ZN B 301 1555 1555 2.55 LINK SG CYS B 108 ZN ZN B 302 1555 1555 2.39 LINK OD2 ASP B 111 ZN ZN B 302 1555 1555 2.11 LINK SG CYS B 116 ZN ZN B 301 1555 1555 2.39 LINK SG CYS B 119 ZN ZN B 301 1555 1555 2.55 LINK ND1 HIS B 125 ZN ZN B 302 1555 1555 2.49 LINK ND1 HIS B 128 ZN ZN B 302 1555 1555 2.21 SITE 1 AC1 4 CYS A 97 HIS A 100 CYS A 116 CYS A 119 SITE 1 AC2 4 CYS A 108 ASP A 111 HIS A 125 HIS A 128 SITE 1 AC3 4 CYS B 97 HIS B 100 CYS B 116 CYS B 119 SITE 1 AC4 4 CYS B 108 ASP B 111 HIS B 125 HIS B 128 CRYST1 72.014 115.319 174.164 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008672 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005742 0.00000