HEADER PROTEIN BINDING 26-JUN-17 5WAH TITLE SOLUTION NMR STRUCTURE OF SIGLEC-5 BINDING DOMAIN FROM STREPTOCOCCAL TITLE 2 BETA PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGA FC RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 92-189; COMPND 5 SYNONYM: BETA ANTIGEN,B ANTIGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 1311; SOURCE 4 GENE: BAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS IGA-FC RECEPTOR, THREE-HELIX BUNDLE, BETA ANTIGEN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,C.CHEN,J.J.FONG,V.NIZET,A.VARKI,J.H.PRESTEGARD REVDAT 5 15-MAY-24 5WAH 1 REMARK REVDAT 4 14-JUN-23 5WAH 1 REMARK REVDAT 3 04-DEC-19 5WAH 1 REMARK REVDAT 2 20-FEB-19 5WAH 1 REMARK REVDAT 1 27-JUN-18 5WAH 0 JRNL AUTH A.ELETSKY,C.CHEN,J.J.FONG,V.NIZET,A.VARKI,J.H.PRESTEGARD JRNL TITL SOLUTION NMR STRUCTURE OF SIGLEC-5 BINDING DOMAIN FROM JRNL TITL 2 STREPTOCOCCAL BETA PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 BY RUNNING CYANA AND AS-DP IN PARALLEL USING NOE-BASED DISTANCE REMARK 3 CONSTRAINTS AND PHI, PSI AND CHI1 DIHEDRAL ANGLE CONSTRAINTS REMARK 3 FROM TALOS-N. CONSENSUS PEAK ASSIGNMENTS WERE SELECTED AND USED REMARK 3 IN ITERATIVE REFINEMENT WITH CYANA. 20 CONFORMERS WITH THE REMARK 3 LOWEST TARGET FUNCTION OUT OF 100 WERE FURTHER REFINED BY REMARK 3 SIMULATED ANNEALING IN EXPLICIT WATER BATH USING THE PROGRAM CNS REMARK 3 WITH PARAM19 FORCE FIELD AND UPPER LIMIT DISTANCE CONSTRAINTS REMARK 3 RELAXED BY 5% REMARK 4 REMARK 4 5WAH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228637. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 130 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 0.45 MM [U-13C; U-15N] IGA-FC REMARK 210 RECEPTOR, 20 MM SODIUM PHOSPHATE, REMARK 210 4 UM DSS, 0.01 % SODIUM AZIDE, REMARK 210 100 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C CT REMARK 210 -HSQC ALIPHATIC; 2D 1H-13C CT- REMARK 210 HSQC AROMATIC; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D (H) REMARK 210 CA(CO)NH; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 COSY ALIPHATIC; 3D HCCH-COSY REMARK 210 AROMATIC; 3D HCCH-TOCSY REMARK 210 ALIPHATIC; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DD2; VNMRS REMARK 210 SPECTROMETER MANUFACTURER : AGILENT; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.97, CARA 1.9.1.7, VNMRJ REMARK 210 4.2A, NMRPIPE 8.9 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 3 -158.12 -131.41 REMARK 500 1 LYS A 4 90.64 -67.87 REMARK 500 1 GLU A 8 54.09 -105.16 REMARK 500 1 THR A 14 -12.96 94.87 REMARK 500 1 ALA A 86 49.26 -84.17 REMARK 500 1 LYS A 90 92.72 -64.08 REMARK 500 1 ASP A 96 94.61 -64.14 REMARK 500 2 ALA A 6 -67.83 -168.26 REMARK 500 2 SER A 10 -176.06 63.17 REMARK 500 2 THR A 14 -163.15 -111.87 REMARK 500 2 LYS A 87 -84.16 61.28 REMARK 500 2 SER A 95 -147.19 64.58 REMARK 500 2 ASP A 96 -109.60 -148.52 REMARK 500 2 THR A 97 147.29 -175.53 REMARK 500 3 GLU A 3 -155.86 -87.31 REMARK 500 3 SER A 10 84.52 -66.81 REMARK 500 3 ALA A 11 -47.93 -147.51 REMARK 500 3 THR A 91 106.67 66.01 REMARK 500 3 GLN A 94 76.57 -169.89 REMARK 500 3 LYS A 98 88.90 -67.90 REMARK 500 4 GLU A 8 -96.20 -137.34 REMARK 500 4 SER A 10 -173.83 -172.44 REMARK 500 4 ASP A 13 -70.60 -81.24 REMARK 500 4 ALA A 86 38.57 -86.83 REMARK 500 4 GLN A 94 -57.23 -147.64 REMARK 500 4 SER A 95 -80.93 50.98 REMARK 500 4 ASP A 96 130.69 -174.82 REMARK 500 5 ALA A 11 38.64 -86.79 REMARK 500 5 LYS A 87 -55.10 -139.34 REMARK 500 6 LYS A 4 -86.82 -160.50 REMARK 500 6 THR A 9 106.66 67.60 REMARK 500 6 THR A 91 94.32 68.60 REMARK 500 6 GLN A 94 91.67 52.97 REMARK 500 6 LYS A 98 129.99 63.90 REMARK 500 7 THR A 9 -34.93 -176.60 REMARK 500 7 SER A 10 18.12 59.52 REMARK 500 7 ALA A 11 90.91 -163.92 REMARK 500 7 THR A 14 -147.47 59.36 REMARK 500 7 ALA A 86 86.07 -69.89 REMARK 500 7 GLN A 88 -49.17 75.32 REMARK 500 7 LYS A 93 -24.93 -155.38 REMARK 500 8 GLU A 8 100.43 57.78 REMARK 500 8 ALA A 86 47.99 -87.53 REMARK 500 8 THR A 97 41.59 -107.97 REMARK 500 9 SER A 10 -21.74 -166.91 REMARK 500 9 ALA A 86 81.09 -69.49 REMARK 500 9 LYS A 90 96.02 -68.45 REMARK 500 9 LYS A 93 85.98 63.68 REMARK 500 9 SER A 95 83.62 -158.63 REMARK 500 9 THR A 97 85.05 -56.57 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30313 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF SIGLEC-5 BINDING DOMAIN FROM REMARK 900 STREPTOCOCCAL BETA PROTEIN DBREF 5WAH A 2 99 UNP P27951 BAG_STRAG 92 189 SEQADV 5WAH GLY A 1 UNP P27951 EXPRESSION TAG SEQRES 1 A 99 GLY VAL GLU LYS THR ALA GLY GLU THR SER ALA THR ASP SEQRES 2 A 99 THR GLY LYS ARG GLU LYS GLN LEU GLN GLN TRP LYS ASN SEQRES 3 A 99 ASN LEU LYS ASN ASP VAL ASP ASN THR ILE LEU SER HIS SEQRES 4 A 99 GLU GLN LYS ASN GLU PHE LYS THR LYS ILE ASP GLU THR SEQRES 5 A 99 ASN ASP SER ASP ALA LEU LEU GLU LEU GLU ASN GLN PHE SEQRES 6 A 99 ASN GLU THR ASN ARG LEU LEU HIS ILE LYS GLN HIS GLU SEQRES 7 A 99 GLU VAL GLU LYS ASP LYS LYS ALA LYS GLN GLN LYS THR SEQRES 8 A 99 LEU LYS GLN SER ASP THR LYS VAL HELIX 1 AA1 THR A 14 THR A 35 1 22 HELIX 2 AA2 SER A 38 THR A 52 1 15 HELIX 3 AA3 ASP A 54 LYS A 85 1 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1