HEADER OXIDOREDUCTASE 26-JUN-17 5WAN TITLE CRYSTAL STRUCTURE OF A FLAVOENZYME RUTA IN THE PYRIMIDINE CATABOLIC TITLE 2 PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIMIDINE MONOOXYGENASE RUTA; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.99.46; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: RUTA, BUE81_22975, BW690_24255; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCA24N KEYWDS FLAVOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,T.MUKHERJEE,S.ABDELWAHED,T.P.BEGLEY,S.E.EALICK REVDAT 2 04-OCT-23 5WAN 1 REMARK REVDAT 1 19-JUL-17 5WAN 0 JRNL AUTH T.MUKHERJEE,Y.ZHANG,S.ABDELWAHED,S.E.EALICK,T.P.BEGLEY JRNL TITL CATALYSIS OF A FLAVOENZYME-MEDIATED AMIDE HYDROLYSIS. JRNL REF J. AM. CHEM. SOC. V. 132 5550 2010 JRNL REFN ESSN 1520-5126 JRNL PMID 20369853 JRNL DOI 10.1021/JA9107676 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 39408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7172 - 4.3322 0.99 2877 154 0.1495 0.1744 REMARK 3 2 4.3322 - 3.4391 1.00 2778 155 0.1252 0.1448 REMARK 3 3 3.4391 - 3.0046 1.00 2779 141 0.1427 0.1566 REMARK 3 4 3.0046 - 2.7299 1.00 2750 121 0.1485 0.1784 REMARK 3 5 2.7299 - 2.5343 1.00 2743 159 0.1485 0.1679 REMARK 3 6 2.5343 - 2.3849 1.00 2727 153 0.1479 0.1795 REMARK 3 7 2.3849 - 2.2655 1.00 2737 135 0.1375 0.1677 REMARK 3 8 2.2655 - 2.1669 1.00 2721 154 0.1404 0.1799 REMARK 3 9 2.1669 - 2.0834 1.00 2701 151 0.1476 0.1782 REMARK 3 10 2.0834 - 2.0115 1.00 2712 146 0.1485 0.1719 REMARK 3 11 2.0115 - 1.9487 1.00 2685 139 0.1529 0.1854 REMARK 3 12 1.9487 - 1.8930 0.98 2687 136 0.1705 0.2171 REMARK 3 13 1.8930 - 1.8431 0.93 2553 119 0.2016 0.2165 REMARK 3 14 1.8431 - 1.7982 0.74 1986 109 0.2498 0.2689 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2959 REMARK 3 ANGLE : 0.822 4031 REMARK 3 CHIRALITY : 0.057 419 REMARK 3 PLANARITY : 0.005 520 REMARK 3 DIHEDRAL : 19.065 1725 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -3:122) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1996 36.4211 12.3004 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.0980 REMARK 3 T33: 0.1084 T12: 0.0452 REMARK 3 T13: -0.0085 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.8085 L22: 1.1479 REMARK 3 L33: 1.4301 L12: -0.1500 REMARK 3 L13: 0.1329 L23: 0.2156 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: -0.1382 S13: -0.0517 REMARK 3 S21: 0.1233 S22: 0.0168 S23: 0.0189 REMARK 3 S31: -0.0002 S32: -0.0631 S33: 0.0131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 123:273) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4347 24.0969 17.3075 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1246 REMARK 3 T33: 0.1830 T12: 0.0289 REMARK 3 T13: 0.0029 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.4309 L22: 0.8109 REMARK 3 L33: 1.0222 L12: -0.0468 REMARK 3 L13: 0.3978 L23: 0.2906 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0981 S13: -0.1003 REMARK 3 S21: 0.1638 S22: 0.0537 S23: 0.0817 REMARK 3 S31: 0.1858 S32: -0.1240 S33: -0.0642 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 274:357) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2825 40.8453 28.4881 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1465 REMARK 3 T33: 0.1069 T12: 0.0776 REMARK 3 T13: -0.0243 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 1.6974 L22: 2.8298 REMARK 3 L33: 1.7347 L12: 0.4204 REMARK 3 L13: 0.8644 L23: 0.0228 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: -0.1423 S13: 0.0488 REMARK 3 S21: 0.2886 S22: 0.0831 S23: -0.1730 REMARK 3 S31: 0.0100 S32: 0.1176 S33: 0.0070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WAN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228677. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39453 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.798 REMARK 200 RESOLUTION RANGE LOW (A) : 40.707 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 1TVL AND 1YW1 REMARK 200 REMARK 200 REMARK: THE AUTHORS STATE THAT RESIDUAL ELECTRON DENSITY WAS REMARK 200 IDENTIFIED IN THE ACTIVE SITE DURING THE FINAL STAGES OF REMARK 200 REFINEMENT. THE ELECTRON DENSITY COULD BE EXPLAINED AS A MIXTURE REMARK 200 OF THE SUBSTRATE URACIL AND THE PRODUCT 3-UREIDOACRYLATE, EVEN REMARK 200 THOUGH NEITHER SUBSTRATE NOR PRODUCT WAS ADDED DURING REMARK 200 PURIFICATION OR CRYSTALLIZATION. FOR CLARITY, ONLY THE URACIL REMARK 200 WAS INCLUDED IN THE FINAL MODEL. AS MODELED, RUTA AND URACIL DO REMARK 200 NOT SHOW EXPECTED INTERACTIONS BASED ON THE PROPOSED MECHANISM. REMARK 200 IN PARTICULAR, FOR THE PEROXIDE TO ADD TO THE C4 CARBONYL OF REMARK 200 URACIL, A HYDROGEN BOND FROM AN ACID INSTEAD OF A WATER MOLECULE REMARK 200 IS EXPECTED. ALSO NEITHER N3 NOR THE C2 CARBONYL IS INVOLVED IN REMARK 200 HYDROGEN BONDING FROM AN ACID AS REQUIRED FOR COLLAPSE OF THE REMARK 200 TETRAHEDRAL INTERMEDIATE. THESE INTERACTIONS COULD CONCEIVABLY REMARK 200 BE PROVIDED BY RESIDUES 274-292, WHICH ARE DISORDERED IN THE REMARK 200 CRYSTAL STRUCTURE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MM FMN, 1.5 M AMMONIUM SULFATE, AND REMARK 280 100 MM MES PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.12267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.24533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.24533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.12267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 ARG A -32 REMARK 465 GLY A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 THR A -23 REMARK 465 ASP A -22 REMARK 465 PRO A -21 REMARK 465 ALA A -20 REMARK 465 LEU A -19 REMARK 465 ARG A -18 REMARK 465 ALA A -17 REMARK 465 GLN A -16 REMARK 465 ASP A -15 REMARK 465 ALA A -14 REMARK 465 ALA A -13 REMARK 465 PRO A -12 REMARK 465 ARG A -11 REMARK 465 LEU A -10 REMARK 465 THR A -9 REMARK 465 PHE A -8 REMARK 465 THR A -7 REMARK 465 LEU A -6 REMARK 465 ARG A -5 REMARK 465 ASP A -4 REMARK 465 GLU A -3 REMARK 465 GLU A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 GLN A 277 REMARK 465 LYS A 278 REMARK 465 ASP A 279 REMARK 465 THR A 280 REMARK 465 ARG A 281 REMARK 465 SER A 282 REMARK 465 GLY A 283 REMARK 465 THR A 284 REMARK 465 ASP A 285 REMARK 465 THR A 286 REMARK 465 ASN A 287 REMARK 465 VAL A 288 REMARK 465 ARG A 289 REMARK 465 GLN A 290 REMARK 465 MET A 291 REMARK 465 ALA A 292 REMARK 465 ALA A 358 REMARK 465 LEU A 359 REMARK 465 THR A 360 REMARK 465 GLN A 361 REMARK 465 GLU A 362 REMARK 465 VAL A 363 REMARK 465 ALA A 364 REMARK 465 GLY A 365 REMARK 465 LEU A 366 REMARK 465 CYS A 367 REMARK 465 GLY A 368 REMARK 465 ARG A 369 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -2 CG CD OE1 OE2 REMARK 470 TRP A 121 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 121 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 140 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 17 76.68 -110.51 REMARK 500 SER A 80 -12.72 -145.95 REMARK 500 ARG A 81 -37.75 -132.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 409 DBREF1 5WAN A -16 364 UNP A0A1R1KFF4_ECOLX DBREF2 5WAN A A0A1R1KFF4 2 382 SEQADV 5WAN MET A -33 UNP A0A1R1KFF INITIATING METHIONINE SEQADV 5WAN ARG A -32 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN GLY A -31 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN SER A -30 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN HIS A -29 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN HIS A -28 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN HIS A -27 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN HIS A -26 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN HIS A -25 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN HIS A -24 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN THR A -23 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN ASP A -22 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN PRO A -21 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN ALA A -20 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN LEU A -19 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN ARG A -18 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN ALA A -17 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN GLY A 365 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN LEU A 366 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN CYS A 367 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN GLY A 368 UNP A0A1R1KFF EXPRESSION TAG SEQADV 5WAN ARG A 369 UNP A0A1R1KFF EXPRESSION TAG SEQRES 1 A 403 MET ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP PRO SEQRES 2 A 403 ALA LEU ARG ALA GLN ASP ALA ALA PRO ARG LEU THR PHE SEQRES 3 A 403 THR LEU ARG ASP GLU GLU ARG LEU MET MET LYS ILE GLY SEQRES 4 A 403 VAL PHE VAL PRO ILE GLY ASN ASN GLY TRP LEU ILE SER SEQRES 5 A 403 THR HIS ALA PRO GLN TYR MET PRO THR PHE GLU LEU ASN SEQRES 6 A 403 LYS ALA ILE VAL GLN LYS ALA GLU HIS TYR HIS PHE ASP SEQRES 7 A 403 PHE ALA LEU SER MET ILE LYS LEU ARG GLY PHE GLY GLY SEQRES 8 A 403 LYS THR GLU PHE TRP ASP HIS ASN LEU GLU SER PHE THR SEQRES 9 A 403 LEU MET ALA GLY LEU ALA ALA VAL THR SER ARG ILE GLN SEQRES 10 A 403 ILE TYR ALA THR ALA ALA THR LEU THR LEU PRO PRO ALA SEQRES 11 A 403 ILE VAL ALA ARG MET ALA ALA THR ILE ASP SER ILE SER SEQRES 12 A 403 GLY GLY ARG PHE GLY VAL ASN LEU VAL THR GLY TRP GLN SEQRES 13 A 403 LYS PRO GLU TYR GLU GLN MET GLY ILE TRP PRO GLY ASP SEQRES 14 A 403 ASP TYR PHE SER ARG ARG TYR ASP TYR LEU THR GLU TYR SEQRES 15 A 403 VAL GLN VAL LEU ARG ASP LEU TRP GLY THR GLY LYS SER SEQRES 16 A 403 ASP PHE LYS GLY ASP PHE PHE THR MET ASN ASP CYS ARG SEQRES 17 A 403 VAL SER PRO GLN PRO SER VAL PRO MET LYS VAL ILE CYS SEQRES 18 A 403 ALA GLY GLN SER ASP ALA GLY MET ALA PHE SER ALA ARG SEQRES 19 A 403 TYR ALA ASP PHE ASN PHE CYS PHE GLY LYS GLY VAL ASN SEQRES 20 A 403 THR PRO THR ALA PHE ALA PRO THR ALA ALA ARG MET LYS SEQRES 21 A 403 GLN ALA ALA GLU GLN THR GLY ARG ASP VAL GLY SER TYR SEQRES 22 A 403 VAL LEU PHE MET VAL ILE ALA ASP GLU THR ASP ASP ALA SEQRES 23 A 403 ALA ARG ALA LYS TRP GLU HIS TYR LYS ALA GLY ALA ASP SEQRES 24 A 403 GLU GLU ALA LEU SER TRP LEU THR GLU GLN SER GLN LYS SEQRES 25 A 403 ASP THR ARG SER GLY THR ASP THR ASN VAL ARG GLN MET SEQRES 26 A 403 ALA ASP PRO THR SER ALA VAL ASN ILE ASN MET GLY THR SEQRES 27 A 403 LEU VAL GLY SER TYR ALA SER VAL ALA ARG MET LEU ASP SEQRES 28 A 403 GLU VAL ALA SER VAL PRO GLY ALA GLU GLY VAL LEU LEU SEQRES 29 A 403 THR PHE ASP ASP PHE LEU SER GLY ILE GLU THR PHE GLY SEQRES 30 A 403 GLU ARG ILE GLN PRO LEU MET GLN CYS ARG ALA HIS LEU SEQRES 31 A 403 PRO ALA LEU THR GLN GLU VAL ALA GLY LEU CYS GLY ARG HET URA A 401 8 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 12 HET FMN A 409 31 HETNAM URA URACIL HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 URA C4 H4 N2 O2 FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 FMN C17 H21 N4 O9 P FORMUL 11 HOH *267(H2 O) HELIX 1 AA1 THR A 27 TYR A 41 1 15 HELIX 2 AA2 GLU A 67 VAL A 78 1 12 HELIX 3 AA3 PRO A 94 GLY A 110 1 17 HELIX 4 AA4 GLN A 122 GLN A 128 1 7 HELIX 5 AA5 ASP A 136 GLY A 159 1 24 HELIX 6 AA6 SER A 191 ALA A 202 1 12 HELIX 7 AA7 PHE A 218 GLN A 231 1 14 HELIX 8 AA8 THR A 249 GLY A 263 1 15 HELIX 9 AA9 ASP A 265 THR A 273 1 9 HELIX 10 AB1 SER A 296 ILE A 300 5 5 HELIX 11 AB2 TYR A 309 SER A 321 1 13 HELIX 12 AB3 ASP A 334 ILE A 346 1 13 HELIX 13 AB4 GLN A 347 ALA A 354 5 8 SHEET 1 AA110 THR A 304 SER A 308 0 SHEET 2 AA110 GLY A 237 ASP A 247 1 N ILE A 245 O LEU A 305 SHEET 3 AA110 ALA A 325 PHE A 332 1 O GLU A 326 N SER A 238 SHEET 4 AA110 LYS A 3 PHE A 7 1 N GLY A 5 O VAL A 328 SHEET 5 AA110 PHE A 45 LEU A 47 1 O LEU A 47 N VAL A 6 SHEET 6 AA110 GLN A 83 ALA A 89 1 O TYR A 85 N ALA A 46 SHEET 7 AA110 PHE A 113 VAL A 118 1 O ASN A 116 N ALA A 86 SHEET 8 AA110 LYS A 184 CYS A 187 1 O ILE A 186 N LEU A 117 SHEET 9 AA110 PHE A 204 PHE A 208 1 O PHE A 206 N CYS A 187 SHEET 10 AA110 GLY A 237 ASP A 247 1 O GLY A 237 N ASN A 205 SHEET 1 AA2 2 LYS A 160 SER A 161 0 SHEET 2 AA2 2 CYS A 173 ARG A 174 -1 O CYS A 173 N SER A 161 CISPEP 1 SER A 176 PRO A 177 0 5.31 SITE 1 AC1 4 TRP A 15 MET A 49 FMN A 409 HOH A 514 SITE 1 AC2 3 LYS A 226 PRO A 323 GLY A 324 SITE 1 AC3 8 PRO A 22 GLN A 23 ARG A 234 HOH A 530 SITE 2 AC3 8 HOH A 547 HOH A 568 HOH A 666 HOH A 686 SITE 1 AC4 4 LYS A 32 GLN A 36 HOH A 592 HOH A 609 SITE 1 AC5 4 ARG A -1 SER A 296 ALA A 297 HOH A 507 SITE 1 AC6 6 TYR A 24 THR A 232 ASP A 334 PHE A 335 SITE 2 AC6 6 LEU A 336 HOH A 666 SITE 1 AC7 5 ARG A 153 ASP A 154 GLY A 157 HIS A 259 SITE 2 AC7 5 HOH A 518 SITE 1 AC8 8 ASN A 12 ASN A 13 TYR A 24 MET A 25 SITE 2 AC8 8 THR A 59 GLU A 60 HOH A 520 HOH A 525 SITE 1 AC9 20 PHE A 7 MET A 49 ILE A 50 THR A 87 SITE 2 AC9 20 VAL A 118 GLY A 120 ARG A 141 TYR A 142 SITE 3 AC9 20 ALA A 188 GLY A 189 GLN A 190 SER A 191 SITE 4 AC9 20 LEU A 329 URA A 401 HOH A 503 HOH A 512 SITE 5 AC9 20 HOH A 514 HOH A 631 HOH A 639 HOH A 679 CRYST1 87.850 87.850 96.368 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011383 0.006572 0.000000 0.00000 SCALE2 0.000000 0.013144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010377 0.00000