HEADER CELL CYCLE 29-JUN-17 5WC2 TITLE CRYSTAL STRUCTURE OF ADP-BOUND HUMAN TRIP13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PACHYTENE CHECKPOINT PROTEIN 2 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HUMAN PAPILLOMAVIRUS TYPE 16 E1 PROTEIN-BINDING PROTEIN, COMPND 5 HPV16 E1 PROTEIN-BINDING PROTEIN,THYROID HORMONE RECEPTOR INTERACTOR COMPND 6 13,THYROID RECEPTOR-INTERACTING PROTEIN 13,TRIP-13; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIP13, PCH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: T1 KEYWDS TRIP13, ATPASE, SPINDLE ASSEMBLY CHECKPOINT, MAD2, P31COMET, CELL KEYWDS 2 CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR B.-C.JEONG,X.LUO REVDAT 3 04-OCT-23 5WC2 1 REMARK REVDAT 2 08-JAN-20 5WC2 1 REMARK REVDAT 1 25-APR-18 5WC2 0 JRNL AUTH M.L.BRULOTTE,B.C.JEONG,F.LI,B.LI,E.B.YU,Q.WU,C.A.BRAUTIGAM, JRNL AUTH 2 H.YU,X.LUO JRNL TITL MECHANISTIC INSIGHT INTO TRIP13-CATALYZED MAD2 STRUCTURAL JRNL TITL 2 TRANSITION AND SPINDLE CHECKPOINT SILENCING. JRNL REF NAT COMMUN V. 8 1956 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29208896 JRNL DOI 10.1038/S41467-017-02012-2 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 3 NUMBER OF REFLECTIONS : 21458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2015 - 4.9943 0.99 2780 142 0.1944 0.2427 REMARK 3 2 4.9943 - 3.9664 1.00 2755 151 0.1560 0.1939 REMARK 3 3 3.9664 - 3.4657 1.00 2756 141 0.1763 0.2063 REMARK 3 4 3.4657 - 3.1491 1.00 2753 148 0.1869 0.2213 REMARK 3 5 3.1491 - 2.9236 1.00 2747 144 0.2053 0.2397 REMARK 3 6 2.9236 - 2.7513 1.00 2732 147 0.2059 0.2461 REMARK 3 7 2.7513 - 2.6136 0.91 2505 135 0.2296 0.2611 REMARK 3 8 2.6136 - 2.4999 0.49 1349 73 0.2366 0.2940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2971 REMARK 3 ANGLE : 0.615 4031 REMARK 3 CHIRALITY : 0.043 488 REMARK 3 PLANARITY : 0.002 497 REMARK 3 DIHEDRAL : 12.621 1796 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3163 136.9048 -1.2953 REMARK 3 T TENSOR REMARK 3 T11: 0.6494 T22: 0.3257 REMARK 3 T33: 0.4836 T12: 0.0424 REMARK 3 T13: 0.0623 T23: -0.0908 REMARK 3 L TENSOR REMARK 3 L11: 1.8270 L22: 3.0969 REMARK 3 L33: 3.8961 L12: 0.4387 REMARK 3 L13: 0.3327 L23: -0.6328 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: 0.0933 S13: 0.4518 REMARK 3 S21: -0.5386 S22: 0.1072 S23: 0.5465 REMARK 3 S31: -1.0167 S32: -0.2424 S33: -0.0604 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3380 115.4155 -10.1904 REMARK 3 T TENSOR REMARK 3 T11: 0.2124 T22: 0.1230 REMARK 3 T33: 0.1304 T12: 0.0052 REMARK 3 T13: -0.0124 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 3.1081 L22: 1.4421 REMARK 3 L33: 1.9937 L12: 1.0617 REMARK 3 L13: 1.5195 L23: 0.4562 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: -0.0415 S13: 0.0915 REMARK 3 S21: 0.1299 S22: 0.0186 S23: -0.0499 REMARK 3 S31: 0.0854 S32: -0.0520 S33: -0.0529 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7253 105.9536 -0.1525 REMARK 3 T TENSOR REMARK 3 T11: 0.3578 T22: 0.3538 REMARK 3 T33: 0.2185 T12: -0.1007 REMARK 3 T13: -0.0416 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 4.8531 L22: 7.3793 REMARK 3 L33: 4.0880 L12: -0.8936 REMARK 3 L13: -0.1779 L23: 0.1268 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: -0.7114 S13: -0.8199 REMARK 3 S21: 0.8352 S22: 0.1492 S23: 0.3761 REMARK 3 S31: 0.3940 S32: -0.4426 S33: -0.0571 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 242 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4867 100.6455 -9.7716 REMARK 3 T TENSOR REMARK 3 T11: 0.3766 T22: 0.3018 REMARK 3 T33: 0.2876 T12: -0.0455 REMARK 3 T13: -0.1077 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 4.9120 L22: 5.6710 REMARK 3 L33: 3.4152 L12: -1.4288 REMARK 3 L13: -0.3756 L23: 0.7739 REMARK 3 S TENSOR REMARK 3 S11: 0.1419 S12: 0.2216 S13: -0.7562 REMARK 3 S21: 0.0944 S22: -0.0352 S23: 0.0464 REMARK 3 S31: 0.7549 S32: -0.2155 S33: -0.0481 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 367 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.5774 128.0707 -15.1397 REMARK 3 T TENSOR REMARK 3 T11: 0.2193 T22: 0.2103 REMARK 3 T33: 0.2032 T12: 0.0463 REMARK 3 T13: 0.0359 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.9870 L22: 2.0515 REMARK 3 L33: 1.1957 L12: 0.6362 REMARK 3 L13: -0.4239 L23: -0.6135 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.3736 S13: 0.2985 REMARK 3 S21: -0.1170 S22: 0.1267 S23: -0.0540 REMARK 3 S31: -0.1753 S32: 0.0698 S33: 0.0117 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 368 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.7249 127.0485 -19.3829 REMARK 3 T TENSOR REMARK 3 T11: 0.3097 T22: 0.3967 REMARK 3 T33: 0.2945 T12: -0.0013 REMARK 3 T13: 0.0548 T23: 0.0852 REMARK 3 L TENSOR REMARK 3 L11: 3.0347 L22: 2.2604 REMARK 3 L33: 1.9772 L12: 2.3771 REMARK 3 L13: -0.0954 L23: -0.6169 REMARK 3 S TENSOR REMARK 3 S11: -0.3103 S12: 0.8624 S13: 0.3491 REMARK 3 S21: -0.6757 S22: 0.2043 S23: -0.3635 REMARK 3 S31: -0.0598 S32: 0.3618 S33: 0.0097 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 385 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.9430 120.8117 -9.5927 REMARK 3 T TENSOR REMARK 3 T11: 0.1599 T22: 0.2777 REMARK 3 T33: 0.2634 T12: 0.0312 REMARK 3 T13: 0.0391 T23: 0.0478 REMARK 3 L TENSOR REMARK 3 L11: 3.8828 L22: 3.2009 REMARK 3 L33: 4.2713 L12: -0.0589 REMARK 3 L13: 0.2958 L23: 0.1709 REMARK 3 S TENSOR REMARK 3 S11: 0.1059 S12: -0.0372 S13: -0.3397 REMARK 3 S21: -0.2588 S22: -0.1507 S23: -0.5952 REMARK 3 S31: 0.1448 S32: 0.5939 S33: -0.0399 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WC2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23254 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 32.199 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.90 REMARK 200 R MERGE FOR SHELL (I) : 1.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XGU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, SODIUM CHLORIDE, ISOPROPANOL, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.40600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.70300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.05450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.35150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 101.75750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 5 REMARK 465 GLY A 6 REMARK 465 ASP A 7 REMARK 465 LEU A 8 REMARK 465 LYS A 9 REMARK 465 GLN A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 CYS A 14 REMARK 465 VAL A 15 REMARK 465 ALA A 16 REMARK 465 GLU A 17 REMARK 465 SER A 18 REMARK 465 THR A 78 REMARK 465 GLU A 79 REMARK 465 LEU A 80 REMARK 465 LYS A 81 REMARK 465 VAL A 82 REMARK 465 LYS A 83 REMARK 465 ASP A 84 REMARK 465 SER A 85 REMARK 465 GLN A 86 REMARK 465 PRO A 87 REMARK 465 ILE A 88 REMARK 465 ASP A 89 REMARK 465 GLY A 106 REMARK 465 PRO A 107 REMARK 465 SER A 108 REMARK 465 SER A 109 REMARK 465 GLU A 110 REMARK 465 ASN A 111 REMARK 465 LEU A 112 REMARK 465 GLU A 113 REMARK 465 GLU A 114 REMARK 465 GLU A 115 REMARK 465 THR A 116 REMARK 465 GLU A 117 REMARK 465 ASN A 118 REMARK 465 LEU A 217 REMARK 465 PHE A 218 REMARK 465 SER A 219 REMARK 465 LYS A 220 REMARK 465 TRP A 221 REMARK 465 PHE A 222 REMARK 465 SER A 223 REMARK 465 GLU A 224 REMARK 465 SER A 225 REMARK 465 GLY A 226 REMARK 465 LYS A 227 REMARK 465 ARG A 261 REMARK 465 ASN A 262 REMARK 465 ALA A 263 REMARK 465 CYS A 264 REMARK 465 ARG A 265 REMARK 465 ALA A 266 REMARK 465 GLY A 267 REMARK 465 THR A 268 REMARK 465 GLU A 269 REMARK 465 PRO A 270 REMARK 465 SER A 271 REMARK 465 ALA A 430 REMARK 465 TYR A 431 REMARK 465 ILE A 432 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 378 O HOH A 602 1.45 REMARK 500 O HIS A 49 H ILE A 51 1.57 REMARK 500 OD1 ASP A 285 O HOH A 601 1.83 REMARK 500 NH1 ARG A 378 O HOH A 602 1.89 REMARK 500 O HOH A 731 O HOH A 732 1.90 REMARK 500 NH1 ARG A 203 O HOH A 603 1.95 REMARK 500 O HOH A 698 O HOH A 705 2.00 REMARK 500 O ASP A 306 O HOH A 604 2.02 REMARK 500 O HOH A 719 O HOH A 727 2.04 REMARK 500 O VAL A 52 O HOH A 605 2.04 REMARK 500 OE2 GLU A 63 O HOH A 606 2.09 REMARK 500 OE1 GLU A 104 O HOH A 607 2.09 REMARK 500 OE2 GLU A 424 O HOH A 608 2.10 REMARK 500 O LEU A 350 O HOH A 609 2.10 REMARK 500 O HOH A 721 O HOH A 734 2.11 REMARK 500 O HOH A 638 O HOH A 706 2.12 REMARK 500 OG SER A 201 O HOH A 610 2.13 REMARK 500 O HOH A 720 O HOH A 721 2.14 REMARK 500 O HOH A 691 O HOH A 696 2.14 REMARK 500 NZ LYS A 340 O HOH A 611 2.18 REMARK 500 O HOH A 648 O HOH A 728 2.18 REMARK 500 NZ LYS A 185 OD1 ASN A 300 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 611 O HOH A 714 5565 2.02 REMARK 500 O HOH A 686 O HOH A 714 5565 2.09 REMARK 500 O HOH A 653 O HOH A 694 3685 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 50 -55.33 64.71 REMARK 500 ILE A 120 -85.42 -64.52 REMARK 500 ALA A 121 48.34 -92.86 REMARK 500 ASP A 306 -100.26 -140.25 REMARK 500 VAL A 400 -60.70 -124.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 736 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 737 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH A 738 DISTANCE = 7.70 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 501 DBREF 5WC2 A 1 432 UNP Q15645 PCH2_HUMAN 1 432 SEQADV 5WC2 ALA A 253 UNP Q15645 GLU 253 ENGINEERED MUTATION SEQRES 1 A 432 MET ASP GLU ALA VAL GLY ASP LEU LYS GLN ALA LEU PRO SEQRES 2 A 432 CYS VAL ALA GLU SER PRO THR VAL HIS VAL GLU VAL HIS SEQRES 3 A 432 GLN ARG GLY SER SER THR ALA LYS LYS GLU ASP ILE ASN SEQRES 4 A 432 LEU SER VAL ARG LYS LEU LEU ASN ARG HIS ASN ILE VAL SEQRES 5 A 432 PHE GLY ASP TYR THR TRP THR GLU PHE ASP GLU PRO PHE SEQRES 6 A 432 LEU THR ARG ASN VAL GLN SER VAL SER ILE ILE ASP THR SEQRES 7 A 432 GLU LEU LYS VAL LYS ASP SER GLN PRO ILE ASP LEU SER SEQRES 8 A 432 ALA CYS THR VAL ALA LEU HIS ILE PHE GLN LEU ASN GLU SEQRES 9 A 432 ASP GLY PRO SER SER GLU ASN LEU GLU GLU GLU THR GLU SEQRES 10 A 432 ASN ILE ILE ALA ALA ASN HIS TRP VAL LEU PRO ALA ALA SEQRES 11 A 432 GLU PHE HIS GLY LEU TRP ASP SER LEU VAL TYR ASP VAL SEQRES 12 A 432 GLU VAL LYS SER HIS LEU LEU ASP TYR VAL MET THR THR SEQRES 13 A 432 LEU LEU PHE SER ASP LYS ASN VAL ASN SER ASN LEU ILE SEQRES 14 A 432 THR TRP ASN ARG VAL VAL LEU LEU HIS GLY PRO PRO GLY SEQRES 15 A 432 THR GLY LYS THR SER LEU CYS LYS ALA LEU ALA GLN LYS SEQRES 16 A 432 LEU THR ILE ARG LEU SER SER ARG TYR ARG TYR GLY GLN SEQRES 17 A 432 LEU ILE GLU ILE ASN SER HIS SER LEU PHE SER LYS TRP SEQRES 18 A 432 PHE SER GLU SER GLY LYS LEU VAL THR LYS MET PHE GLN SEQRES 19 A 432 LYS ILE GLN ASP LEU ILE ASP ASP LYS ASP ALA LEU VAL SEQRES 20 A 432 PHE VAL LEU ILE ASP ALA VAL GLU SER LEU THR ALA ALA SEQRES 21 A 432 ARG ASN ALA CYS ARG ALA GLY THR GLU PRO SER ASP ALA SEQRES 22 A 432 ILE ARG VAL VAL ASN ALA VAL LEU THR GLN ILE ASP GLN SEQRES 23 A 432 ILE LYS ARG HIS SER ASN VAL VAL ILE LEU THR THR SER SEQRES 24 A 432 ASN ILE THR GLU LYS ILE ASP VAL ALA PHE VAL ASP ARG SEQRES 25 A 432 ALA ASP ILE LYS GLN TYR ILE GLY PRO PRO SER ALA ALA SEQRES 26 A 432 ALA ILE PHE LYS ILE TYR LEU SER CYS LEU GLU GLU LEU SEQRES 27 A 432 MET LYS CYS GLN ILE ILE TYR PRO ARG GLN GLN LEU LEU SEQRES 28 A 432 THR LEU ARG GLU LEU GLU MET ILE GLY PHE ILE GLU ASN SEQRES 29 A 432 ASN VAL SER LYS LEU SER LEU LEU LEU ASN ASP ILE SER SEQRES 30 A 432 ARG LYS SER GLU GLY LEU SER GLY ARG VAL LEU ARG LYS SEQRES 31 A 432 LEU PRO PHE LEU ALA HIS ALA LEU TYR VAL GLN ALA PRO SEQRES 32 A 432 THR VAL THR ILE GLU GLY PHE LEU GLN ALA LEU SER LEU SEQRES 33 A 432 ALA VAL ASP LYS GLN PHE GLU GLU ARG LYS LYS LEU ALA SEQRES 34 A 432 ALA TYR ILE HET ADP A 501 39 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *138(H2 O) HELIX 1 AA1 LYS A 34 ASN A 50 1 17 HELIX 2 AA2 GLU A 63 ASN A 69 1 7 HELIX 3 AA3 ALA A 129 HIS A 133 5 5 HELIX 4 AA4 GLY A 134 LEU A 139 1 6 HELIX 5 AA5 GLU A 144 LYS A 162 1 19 HELIX 6 AA6 GLY A 184 LEU A 200 1 17 HELIX 7 AA7 VAL A 229 ASP A 241 1 13 HELIX 8 AA8 VAL A 254 ALA A 260 1 7 HELIX 9 AA9 ALA A 273 LYS A 288 1 16 HELIX 10 AB1 VAL A 307 ARG A 312 1 6 HELIX 11 AB2 SER A 323 CYS A 341 1 19 HELIX 12 AB3 THR A 352 ILE A 359 1 8 HELIX 13 AB4 SER A 367 SER A 380 1 14 HELIX 14 AB5 SER A 384 VAL A 400 1 17 HELIX 15 AB6 THR A 406 ALA A 429 1 24 SHEET 1 AA1 4 THR A 57 TRP A 58 0 SHEET 2 AA1 4 VAL A 70 ILE A 76 -1 O VAL A 73 N TRP A 58 SHEET 3 AA1 4 THR A 20 GLN A 27 -1 N HIS A 26 O GLN A 71 SHEET 4 AA1 4 THR A 94 GLN A 101 1 O THR A 94 N VAL A 21 SHEET 1 AA2 6 ALA A 122 LEU A 127 0 SHEET 2 AA2 6 TYR A 206 ILE A 212 -1 O GLY A 207 N LEU A 127 SHEET 3 AA2 6 ALA A 245 ILE A 251 1 O LEU A 250 N ILE A 210 SHEET 4 AA2 6 VAL A 293 SER A 299 1 O LEU A 296 N VAL A 249 SHEET 5 AA2 6 VAL A 174 HIS A 178 1 N VAL A 175 O ILE A 295 SHEET 6 AA2 6 ILE A 315 TYR A 318 1 O ILE A 315 N LEU A 176 CISPEP 1 LEU A 127 PRO A 128 0 -1.44 CISPEP 2 TYR A 345 PRO A 346 0 1.02 SITE 1 AC1 16 SER A 138 VAL A 140 TYR A 141 GLY A 182 SITE 2 AC1 16 THR A 183 GLY A 184 LYS A 185 THR A 186 SITE 3 AC1 16 SER A 187 ILE A 330 GLY A 385 ARG A 386 SITE 4 AC1 16 ARG A 389 HOH A 615 HOH A 663 HOH A 687 CRYST1 98.369 98.369 122.109 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010166 0.005869 0.000000 0.00000 SCALE2 0.000000 0.011738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008189 0.00000