HEADER HYDROLASE/HYDROLASE INHIBITOR 10-JUL-17 5WEJ TITLE 1.95 A RESOLUTION STRUCTURE OF NOROVIRUS 3CL PROTEASE IN COMPLEX WITH TITLE 2 A DIPEPTIDYL OXAZOLIDINONE-BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FULL LENGTH ENZYME (UNP RESIDUES 1101-1281); COMPND 5 EC: 3.6.1.15,3.4.22.66,2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE N-TERMINAL RESIDUES (MHHHHHH) ARE PART OF THE COMPND 8 PURIFICATION TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NORWALK VIRUS; SOURCE 3 ORGANISM_COMMON: HU/NV/NV/1968/US; SOURCE 4 ORGANISM_TAXID: 524364; SOURCE 5 STRAIN: GI/HUMAN/UNITED STATES/NORWALK/1968; SOURCE 6 GENE: ORF1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS PROTEASE, NOROVIRUS, NORWALK VIRUS, ANTIVIRAL INHIBITORS, KEYWDS 2 OXAZOLIDINONE-BASED DIPEPTIDYL INHIBITOR, HYDROLASE-HYDROLASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,K.P.BATTAILE,N.MEHZABEEN,V.C.DAMALANKA,Y.KIM, AUTHOR 2 A.C.G.KANKANAMALAGE,A.D.RATHNAYAKE,H.N.NGUYEN,K.O.CHANG,W.C.GROUTAS REVDAT 4 04-OCT-23 5WEJ 1 REMARK REVDAT 3 11-DEC-19 5WEJ 1 REMARK REVDAT 2 27-DEC-17 5WEJ 1 JRNL REVDAT 1 13-DEC-17 5WEJ 0 JRNL AUTH V.C.DAMALANKA,Y.KIM,A.C.GALASITI KANKANAMALAGE, JRNL AUTH 2 A.D.RATHNAYAKE,N.MEHZABEEN,K.P.BATTAILE,S.LOVELL,H.N.NGUYEN, JRNL AUTH 3 G.H.LUSHINGTON,K.O.CHANG,W.C.GROUTAS JRNL TITL STRUCTURE-GUIDED DESIGN, SYNTHESIS AND EVALUATION OF JRNL TITL 2 OXAZOLIDINONE-BASED INHIBITORS OF NOROVIRUS 3CL PROTEASE. JRNL REF EUR J MED CHEM V. 143 881 2017 JRNL REFN ISSN 1768-3254 JRNL PMID 29227928 JRNL DOI 10.1016/J.EJMECH.2017.12.014 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2621 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2991 - 4.1993 1.00 3031 173 0.1880 0.2245 REMARK 3 2 4.1993 - 3.3338 1.00 2816 149 0.1670 0.1966 REMARK 3 3 3.3338 - 2.9126 1.00 2795 138 0.1945 0.2204 REMARK 3 4 2.9126 - 2.6464 1.00 2728 138 0.1897 0.2497 REMARK 3 5 2.6464 - 2.4568 1.00 2690 139 0.1958 0.2476 REMARK 3 6 2.4568 - 2.3120 1.00 2709 136 0.1839 0.2724 REMARK 3 7 2.3120 - 2.1962 1.00 2674 128 0.1938 0.2599 REMARK 3 8 2.1962 - 2.1006 1.00 2704 117 0.1997 0.2144 REMARK 3 9 2.1006 - 2.0197 1.00 2678 136 0.2080 0.2564 REMARK 3 10 2.0197 - 1.9500 1.00 2646 146 0.2374 0.2802 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2544 REMARK 3 ANGLE : 1.020 3464 REMARK 3 CHIRALITY : 0.064 399 REMARK 3 PLANARITY : 0.007 439 REMARK 3 DIHEDRAL : 13.743 1486 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228911. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 49.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.60 REMARK 200 R MERGE FOR SHELL (I) : 1.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 5T6D REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 3350, 100 MM BIS-TRIS, REMARK 280 200 MM LITHIUM SUFLATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.18267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 238.36533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 178.77400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 297.95667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.59133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 119.18267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 238.36533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 297.95667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 178.77400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.59133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 111 REMARK 465 GLY A 174 REMARK 465 GLU A 175 REMARK 465 GLY A 176 REMARK 465 GLU A 177 REMARK 465 THR A 178 REMARK 465 ALA A 179 REMARK 465 LEU A 180 REMARK 465 GLU A 181 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 1 REMARK 465 PRO B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 125 REMARK 465 ASN B 126 REMARK 465 ALA B 127 REMARK 465 LYS B 128 REMARK 465 GLY B 129 REMARK 465 MET B 130 REMARK 465 ASP B 131 REMARK 465 ALA B 173 REMARK 465 GLY B 174 REMARK 465 GLU B 175 REMARK 465 GLY B 176 REMARK 465 GLU B 177 REMARK 465 THR B 178 REMARK 465 ALA B 179 REMARK 465 LEU B 180 REMARK 465 GLU B 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 37 CD CE NZ REMARK 470 GLU A 75 CD OE1 OE2 REMARK 470 ARG A 108 CD NE CZ NH1 NH2 REMARK 470 GLN A 110 CG CD OE1 NE2 REMARK 470 ARG A 112 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 113 CG CD1 CD2 REMARK 470 ASN A 126 CG OD1 ND2 REMARK 470 LYS A 128 CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS B 37 CD CE NZ REMARK 470 LYS B 63 CE NZ REMARK 470 GLU B 75 CG CD OE1 OE2 REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 112 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 113 CG CD1 CD2 REMARK 470 LEU B 132 CG CD1 CD2 REMARK 470 LYS B 146 CD CE NZ REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 149 CG OD1 ND2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 340 O HOH A 372 2.07 REMARK 500 O HOH A 352 O HOH A 363 2.09 REMARK 500 O HOH B 309 O HOH B 367 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 127 33.46 -87.85 REMARK 500 LYS B 63 98.37 -67.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 V45 A 201 REMARK 610 V45 B 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue V45 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide V45 B 201 and CYS B REMARK 800 139 DBREF 5WEJ A 1 181 UNP Q83883 POLG_NVN68 1101 1281 DBREF 5WEJ B 1 181 UNP Q83883 POLG_NVN68 1101 1281 SEQADV 5WEJ MET A -6 UNP Q83883 INITIATING METHIONINE SEQADV 5WEJ HIS A -5 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ HIS A -4 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ HIS A -3 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ HIS A -2 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ HIS A -1 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ HIS A 0 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ MET B -6 UNP Q83883 INITIATING METHIONINE SEQADV 5WEJ HIS B -5 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ HIS B -4 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ HIS B -3 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ HIS B -2 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ HIS B -1 UNP Q83883 EXPRESSION TAG SEQADV 5WEJ HIS B 0 UNP Q83883 EXPRESSION TAG SEQRES 1 A 188 MET HIS HIS HIS HIS HIS HIS ALA PRO PRO THR LEU TRP SEQRES 2 A 188 SER ARG VAL THR LYS PHE GLY SER GLY TRP GLY PHE TRP SEQRES 3 A 188 VAL SER PRO THR VAL PHE ILE THR THR THR HIS VAL VAL SEQRES 4 A 188 PRO THR GLY VAL LYS GLU PHE PHE GLY GLU PRO LEU SER SEQRES 5 A 188 SER ILE ALA ILE HIS GLN ALA GLY GLU PHE THR GLN PHE SEQRES 6 A 188 ARG PHE SER LYS LYS MET ARG PRO ASP LEU THR GLY MET SEQRES 7 A 188 VAL LEU GLU GLU GLY CYS PRO GLU GLY THR VAL CYS SER SEQRES 8 A 188 VAL LEU ILE LYS ARG ASP SER GLY GLU LEU LEU PRO LEU SEQRES 9 A 188 ALA VAL ARG MET GLY ALA ILE ALA SER MET ARG ILE GLN SEQRES 10 A 188 GLY ARG LEU VAL HIS GLY GLN SER GLY MET LEU LEU THR SEQRES 11 A 188 GLY ALA ASN ALA LYS GLY MET ASP LEU GLY THR ILE PRO SEQRES 12 A 188 GLY ASP CYS GLY ALA PRO TYR VAL HIS LYS ARG GLY ASN SEQRES 13 A 188 ASP TRP VAL VAL CYS GLY VAL HIS ALA ALA ALA THR LYS SEQRES 14 A 188 SER GLY ASN THR VAL VAL CYS ALA VAL GLN ALA GLY GLU SEQRES 15 A 188 GLY GLU THR ALA LEU GLU SEQRES 1 B 188 MET HIS HIS HIS HIS HIS HIS ALA PRO PRO THR LEU TRP SEQRES 2 B 188 SER ARG VAL THR LYS PHE GLY SER GLY TRP GLY PHE TRP SEQRES 3 B 188 VAL SER PRO THR VAL PHE ILE THR THR THR HIS VAL VAL SEQRES 4 B 188 PRO THR GLY VAL LYS GLU PHE PHE GLY GLU PRO LEU SER SEQRES 5 B 188 SER ILE ALA ILE HIS GLN ALA GLY GLU PHE THR GLN PHE SEQRES 6 B 188 ARG PHE SER LYS LYS MET ARG PRO ASP LEU THR GLY MET SEQRES 7 B 188 VAL LEU GLU GLU GLY CYS PRO GLU GLY THR VAL CYS SER SEQRES 8 B 188 VAL LEU ILE LYS ARG ASP SER GLY GLU LEU LEU PRO LEU SEQRES 9 B 188 ALA VAL ARG MET GLY ALA ILE ALA SER MET ARG ILE GLN SEQRES 10 B 188 GLY ARG LEU VAL HIS GLY GLN SER GLY MET LEU LEU THR SEQRES 11 B 188 GLY ALA ASN ALA LYS GLY MET ASP LEU GLY THR ILE PRO SEQRES 12 B 188 GLY ASP CYS GLY ALA PRO TYR VAL HIS LYS ARG GLY ASN SEQRES 13 B 188 ASP TRP VAL VAL CYS GLY VAL HIS ALA ALA ALA THR LYS SEQRES 14 B 188 SER GLY ASN THR VAL VAL CYS ALA VAL GLN ALA GLY GLU SEQRES 15 B 188 GLY GLU THR ALA LEU GLU HET V45 A 201 24 HET V45 B 201 24 HETNAM V45 (2S)-2-{(5S)-5-[(3-CHLOROPHENYL)METHYL]-2-OXO-1,3- HETNAM 2 V45 OXAZOLIDIN-3-YL}-4-METHYL-N-{(2S)-1-OXO-3-[(3S)-2- HETNAM 3 V45 OXOPYRROLIDIN-3-YL]PROPAN-2-YL}PENTANAMIDE FORMUL 3 V45 2(C23 H30 CL N3 O5) FORMUL 5 HOH *147(H2 O) HELIX 1 AA1 PRO A 2 ARG A 8 1 7 HELIX 2 AA2 HIS A 30 VAL A 32 5 3 HELIX 3 AA3 LEU B 5 SER B 7 5 3 HELIX 4 AA4 HIS B 30 VAL B 32 5 3 SHEET 1 AA1 5 VAL A 9 PHE A 12 0 SHEET 2 AA1 5 GLY A 15 TRP A 19 -1 O GLY A 17 N THR A 10 SHEET 3 AA1 5 VAL A 24 THR A 28 -1 O ILE A 26 N PHE A 18 SHEET 4 AA1 5 PHE A 55 PHE A 60 -1 O PHE A 58 N PHE A 25 SHEET 5 AA1 5 ILE A 47 ALA A 52 -1 N ALA A 52 O PHE A 55 SHEET 1 AA2 2 GLU A 38 PHE A 39 0 SHEET 2 AA2 2 GLU A 42 PRO A 43 -1 O GLU A 42 N PHE A 39 SHEET 1 AA3 8 VAL A 72 LEU A 73 0 SHEET 2 AA3 8 ASP A 150 ALA A 160 1 O VAL A 153 N VAL A 72 SHEET 3 AA3 8 THR A 166 ALA A 170 -1 O ALA A 170 N VAL A 156 SHEET 4 AA3 8 LEU A 113 LEU A 121 -1 N GLN A 117 O CYS A 169 SHEET 5 AA3 8 LEU A 94 ARG A 108 -1 N GLY A 102 O SER A 118 SHEET 6 AA3 8 VAL A 82 LYS A 88 -1 N CYS A 83 O VAL A 99 SHEET 7 AA3 8 PRO A 142 ARG A 147 -1 O VAL A 144 N SER A 84 SHEET 8 AA3 8 ASP A 150 ALA A 160 -1 O ASP A 150 N ARG A 147 SHEET 1 AA4 5 VAL B 9 PHE B 12 0 SHEET 2 AA4 5 GLY B 15 TRP B 19 -1 O GLY B 15 N PHE B 12 SHEET 3 AA4 5 VAL B 24 THR B 28 -1 O ILE B 26 N PHE B 18 SHEET 4 AA4 5 PHE B 55 PHE B 60 -1 O PHE B 58 N PHE B 25 SHEET 5 AA4 5 ILE B 47 ALA B 52 -1 N HIS B 50 O GLN B 57 SHEET 1 AA5 2 GLU B 38 PHE B 39 0 SHEET 2 AA5 2 GLU B 42 PRO B 43 -1 O GLU B 42 N PHE B 39 SHEET 1 AA6 8 VAL B 72 LEU B 73 0 SHEET 2 AA6 8 ASP B 150 ALA B 160 1 O VAL B 153 N VAL B 72 SHEET 3 AA6 8 THR B 166 ALA B 170 -1 O VAL B 168 N ALA B 158 SHEET 4 AA6 8 ARG B 112 LEU B 121 -1 N GLN B 117 O CYS B 169 SHEET 5 AA6 8 LEU B 94 ILE B 109 -1 N GLY B 102 O SER B 118 SHEET 6 AA6 8 VAL B 82 LYS B 88 -1 N ILE B 87 O LEU B 95 SHEET 7 AA6 8 PRO B 142 ARG B 147 -1 O VAL B 144 N SER B 84 SHEET 8 AA6 8 ASP B 150 ALA B 160 -1 O ASP B 150 N ARG B 147 SSBOND 1 CYS A 77 CYS A 154 1555 1555 2.09 SSBOND 2 CYS B 77 CYS B 154 1555 1555 2.06 LINK SG CYS A 139 C25 V45 A 201 1555 1555 1.80 LINK SG CYS B 139 C25 V45 B 201 1555 1555 1.80 SITE 1 AC1 12 HIS A 30 ILE A 109 THR A 134 CYS A 139 SITE 2 AC1 12 HIS A 157 ALA A 158 ALA A 159 ALA A 160 SITE 3 AC1 12 HOH A 332 HOH A 342 HOH A 347 HOH B 316 SITE 1 AC2 17 GLY B 15 TRP B 16 HIS B 30 VAL B 31 SITE 2 AC2 17 GLN B 110 THR B 134 GLY B 137 ASP B 138 SITE 3 AC2 17 GLY B 140 ALA B 141 HIS B 157 ALA B 158 SITE 4 AC2 17 ALA B 159 ALA B 160 HOH B 324 HOH B 340 SITE 5 AC2 17 HOH B 351 CRYST1 59.556 59.556 357.548 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016791 0.009694 0.000000 0.00000 SCALE2 0.000000 0.019388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002797 0.00000