HEADER HYDROLASE/HYDROLASE INHIBITOR 13-JUL-17 5WG8 TITLE STRUCTURE OF PP5C WITH LB-100; 7-OXABICYCLO[2.2.1]HEPTANE-2,3- TITLE 2 DICARBONYL MOIETY MODELED IN THE DENSITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 169-499; COMPND 5 SYNONYM: PP5,PROTEIN PHOSPHATASE T,PPT; COMPND 6 EC: 3.1.3.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPP5C, PPP5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE INHIBITOR, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.M.D'ARCY,M.R.SWINGLE,R.E.HONKANEN,A.PRAKASH REVDAT 4 04-OCT-23 5WG8 1 REMARK REVDAT 3 13-MAR-19 5WG8 1 JRNL REVDAT 2 06-FEB-19 5WG8 1 JRNL REVDAT 1 18-JUL-18 5WG8 0 JRNL AUTH B.M.D'ARCY,M.R.SWINGLE,C.M.PAPKE,K.A.ABNEY,E.S.BOUSKA, JRNL AUTH 2 A.PRAKASH,R.E.HONKANEN JRNL TITL THE ANTITUMOR DRUG LB-100 IS A CATALYTIC INHIBITOR OF JRNL TITL 2 PROTEIN PHOSPHATASE 2A (PPP2CA) AND 5 (PPP5C) COORDINATING JRNL TITL 3 WITH THE ACTIVE-SITE CATALYTIC METALS IN PPP5C. JRNL REF MOL. CANCER THER. V. 18 556 2019 JRNL REFN ESSN 1538-8514 JRNL PMID 30679389 JRNL DOI 10.1158/1535-7163.MCT-17-1143 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 81754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.880 REMARK 3 FREE R VALUE TEST SET COUNT : 8079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3438 - 5.1190 1.00 2487 244 0.1783 0.2027 REMARK 3 2 5.1190 - 4.0662 1.00 2471 267 0.1298 0.1463 REMARK 3 3 4.0662 - 3.5531 1.00 2491 290 0.1362 0.1713 REMARK 3 4 3.5531 - 3.2287 1.00 2437 292 0.1417 0.1553 REMARK 3 5 3.2287 - 2.9975 1.00 2500 254 0.1459 0.1600 REMARK 3 6 2.9975 - 2.8209 1.00 2486 270 0.1509 0.1862 REMARK 3 7 2.8209 - 2.6797 1.00 2489 263 0.1502 0.1884 REMARK 3 8 2.6797 - 2.5631 1.00 2498 242 0.1460 0.1810 REMARK 3 9 2.5631 - 2.4645 1.00 2456 286 0.1427 0.1798 REMARK 3 10 2.4645 - 2.3795 1.00 2456 295 0.1447 0.1925 REMARK 3 11 2.3795 - 2.3051 1.00 2486 264 0.1380 0.1654 REMARK 3 12 2.3051 - 2.2392 1.00 2489 270 0.1270 0.1635 REMARK 3 13 2.2392 - 2.1803 1.00 2478 254 0.1326 0.1789 REMARK 3 14 2.1803 - 2.1271 1.00 2466 261 0.1332 0.1662 REMARK 3 15 2.1271 - 2.0788 1.00 2471 315 0.1332 0.1820 REMARK 3 16 2.0788 - 2.0345 1.00 2422 262 0.1271 0.1720 REMARK 3 17 2.0345 - 1.9939 1.00 2546 251 0.1436 0.1928 REMARK 3 18 1.9939 - 1.9562 1.00 2547 219 0.1450 0.2011 REMARK 3 19 1.9562 - 1.9213 1.00 2465 264 0.1431 0.1824 REMARK 3 20 1.9213 - 1.8887 1.00 2497 248 0.1414 0.2097 REMARK 3 21 1.8887 - 1.8583 1.00 2457 299 0.1550 0.2022 REMARK 3 22 1.8583 - 1.8297 1.00 2482 299 0.1709 0.2102 REMARK 3 23 1.8297 - 1.8028 1.00 2499 264 0.1780 0.2463 REMARK 3 24 1.8028 - 1.7774 1.00 2415 300 0.2005 0.2737 REMARK 3 25 1.7774 - 1.7534 1.00 2485 274 0.2089 0.2128 REMARK 3 26 1.7534 - 1.7306 0.99 2448 283 0.2073 0.2569 REMARK 3 27 1.7306 - 1.7090 1.00 2493 258 0.2369 0.2856 REMARK 3 28 1.7090 - 1.6884 0.98 2369 282 0.2799 0.3109 REMARK 3 29 1.6884 - 1.6688 0.93 2330 249 0.3147 0.3620 REMARK 3 30 1.6688 - 1.6500 0.86 2059 260 0.3209 0.3728 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2704 REMARK 3 ANGLE : 0.950 3689 REMARK 3 CHIRALITY : 0.056 400 REMARK 3 PLANARITY : 0.007 482 REMARK 3 DIHEDRAL : 10.507 1619 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER IMUS MICROFOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : INCOATEC REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT PROTEUM 3 REMARK 200 DATA SCALING SOFTWARE : SADABS PROTEUM 3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43438 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.73800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1S95 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS-HCL PH 8.0, 35% 2-METHYL REMARK 280 -2,4-PENTANEDIOL, AND 10% POLYETHYLENE GLYCOL METHYL ETHER 5000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.32800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.74700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.57500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.74700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.32800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.57500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 167 REMARK 465 ALA A 168 REMARK 465 SER A 169 REMARK 465 MET A 170 REMARK 465 THR A 171 REMARK 465 THR A 492 REMARK 465 LEU A 493 REMARK 465 LEU A 494 REMARK 465 GLN A 495 REMARK 465 LEU A 496 REMARK 465 GLY A 497 REMARK 465 MET A 498 REMARK 465 MET A 499 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 174 CG OD1 OD2 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 TYR A 176 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 177 OG REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 LYS A 207 CD CE NZ REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 GLU A 262 CD OE1 OE2 REMARK 470 GLU A 329 CD OE1 OE2 REMARK 470 LYS A 399 CG CD CE NZ REMARK 470 GLN A 454 CG CD OE1 NE2 REMARK 470 LYS A 485 CD CE NZ REMARK 470 ASN A 491 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 649 O HOH A 744 2554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 173 -100.62 -124.49 REMARK 500 ASN A 269 54.50 -91.37 REMARK 500 ASP A 274 159.53 75.91 REMARK 500 ARG A 275 -66.40 73.66 REMARK 500 TYR A 323 -113.54 -130.04 REMARK 500 SER A 403 -152.41 64.41 REMARK 500 SER A 426 -127.12 -135.29 REMARK 500 HIS A 427 -3.51 75.47 REMARK 500 ASP A 453 19.52 58.82 REMARK 500 ASP A 468 86.20 -163.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LB1 A 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 502 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 242 OD2 REMARK 620 2 HIS A 244 NE2 103.7 REMARK 620 3 ASP A 271 OD2 90.6 104.2 REMARK 620 4 LB1 A 503 O02 169.6 83.8 94.6 REMARK 620 5 LB1 A 503 O04 88.5 167.0 79.9 83.6 REMARK 620 6 LB1 A 503 O01 89.8 91.7 163.5 82.7 83.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 271 OD2 REMARK 620 2 ASN A 303 OD1 92.5 REMARK 620 3 HIS A 352 NE2 83.8 97.0 REMARK 620 4 HIS A 427 ND1 166.4 101.2 95.0 REMARK 620 5 LB1 A 503 O04 78.0 143.2 116.8 90.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LB1 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MRD A 505 DBREF 5WG8 A 169 499 UNP P53041 PPP5_HUMAN 169 499 SEQADV 5WG8 GLY A 167 UNP P53041 EXPRESSION TAG SEQADV 5WG8 ALA A 168 UNP P53041 EXPRESSION TAG SEQRES 1 A 333 GLY ALA SER MET THR ILE GLU ASP GLU TYR SER GLY PRO SEQRES 2 A 333 LYS LEU GLU ASP GLY LYS VAL THR ILE SER PHE MET LYS SEQRES 3 A 333 GLU LEU MET GLN TRP TYR LYS ASP GLN LYS LYS LEU HIS SEQRES 4 A 333 ARG LYS CYS ALA TYR GLN ILE LEU VAL GLN VAL LYS GLU SEQRES 5 A 333 VAL LEU SER LYS LEU SER THR LEU VAL GLU THR THR LEU SEQRES 6 A 333 LYS GLU THR GLU LYS ILE THR VAL CYS GLY ASP THR HIS SEQRES 7 A 333 GLY GLN PHE TYR ASP LEU LEU ASN ILE PHE GLU LEU ASN SEQRES 8 A 333 GLY LEU PRO SER GLU THR ASN PRO TYR ILE PHE ASN GLY SEQRES 9 A 333 ASP PHE VAL ASP ARG GLY SER PHE SER VAL GLU VAL ILE SEQRES 10 A 333 LEU THR LEU PHE GLY PHE LYS LEU LEU TYR PRO ASP HIS SEQRES 11 A 333 PHE HIS LEU LEU ARG GLY ASN HIS GLU THR ASP ASN MET SEQRES 12 A 333 ASN GLN ILE TYR GLY PHE GLU GLY GLU VAL LYS ALA LYS SEQRES 13 A 333 TYR THR ALA GLN MET TYR GLU LEU PHE SER GLU VAL PHE SEQRES 14 A 333 GLU TRP LEU PRO LEU ALA GLN CYS ILE ASN GLY LYS VAL SEQRES 15 A 333 LEU ILE MET HIS GLY GLY LEU PHE SER GLU ASP GLY VAL SEQRES 16 A 333 THR LEU ASP ASP ILE ARG LYS ILE GLU ARG ASN ARG GLN SEQRES 17 A 333 PRO PRO ASP SER GLY PRO MET CYS ASP LEU LEU TRP SER SEQRES 18 A 333 ASP PRO GLN PRO GLN ASN GLY ARG SER ILE SER LYS ARG SEQRES 19 A 333 GLY VAL SER CYS GLN PHE GLY PRO ASP VAL THR LYS ALA SEQRES 20 A 333 PHE LEU GLU GLU ASN ASN LEU ASP TYR ILE ILE ARG SER SEQRES 21 A 333 HIS GLU VAL LYS ALA GLU GLY TYR GLU VAL ALA HIS GLY SEQRES 22 A 333 GLY ARG CYS VAL THR VAL PHE SER ALA PRO ASN TYR CYS SEQRES 23 A 333 ASP GLN MET GLY ASN LYS ALA SER TYR ILE HIS LEU GLN SEQRES 24 A 333 GLY SER ASP LEU ARG PRO GLN PHE HIS GLN PHE THR ALA SEQRES 25 A 333 VAL PRO HIS PRO ASN VAL LYS PRO MET ALA TYR ALA ASN SEQRES 26 A 333 THR LEU LEU GLN LEU GLY MET MET HET MN A 501 1 HET MN A 502 1 HET LB1 A 503 11 HET MPD A 504 8 HET MRD A 505 8 HETNAM MN MANGANESE (II) ION HETNAM LB1 (1S,2R,3S,4R)-3-(4-METHYLPIPERAZINE-1-CARBONYL)-7- HETNAM 2 LB1 OXABICYCLO[2.2.1]HEPTANE-2-CARBOXYLIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 2 MN 2(MN 2+) FORMUL 4 LB1 C13 H20 N2 O4 FORMUL 5 MPD C6 H14 O2 FORMUL 6 MRD C6 H14 O2 FORMUL 7 HOH *262(H2 O) HELIX 1 AA1 THR A 187 ASP A 200 1 14 HELIX 2 AA2 HIS A 205 LYS A 222 1 18 HELIX 3 AA3 GLN A 246 GLY A 258 1 13 HELIX 4 AA4 PHE A 278 TYR A 293 1 16 HELIX 5 AA5 THR A 306 GLY A 314 1 9 HELIX 6 AA6 GLY A 314 TYR A 323 1 10 HELIX 7 AA7 THR A 324 GLU A 336 1 13 HELIX 8 AA8 THR A 362 LYS A 368 1 7 HELIX 9 AA9 GLY A 379 SER A 387 1 9 HELIX 10 AB1 GLY A 407 ASN A 419 1 13 HELIX 11 AB2 HIS A 438 GLY A 440 5 3 HELIX 12 AB3 ASN A 450 GLN A 454 5 5 SHEET 1 AA1 6 LEU A 226 THR A 229 0 SHEET 2 AA1 6 ALA A 341 ILE A 344 1 O CYS A 343 N VAL A 227 SHEET 3 AA1 6 VAL A 348 MET A 351 -1 O ILE A 350 N GLN A 342 SHEET 4 AA1 6 TYR A 422 ARG A 425 1 O ILE A 424 N LEU A 349 SHEET 5 AA1 6 CYS A 442 VAL A 445 1 O VAL A 443 N ARG A 425 SHEET 6 AA1 6 TYR A 434 ALA A 437 -1 N GLU A 435 O THR A 444 SHEET 1 AA2 5 PHE A 297 LEU A 300 0 SHEET 2 AA2 5 TYR A 266 ASN A 269 1 N TYR A 266 O HIS A 298 SHEET 3 AA2 5 LYS A 236 CYS A 240 1 N CYS A 240 O ILE A 267 SHEET 4 AA2 5 ALA A 459 GLN A 465 -1 O ILE A 462 N VAL A 239 SHEET 5 AA2 5 ASP A 468 PHE A 476 -1 O PHE A 476 N ALA A 459 SHEET 1 AA3 3 ASP A 388 PRO A 389 0 SHEET 2 AA3 3 CYS A 404 PHE A 406 1 O PHE A 406 N ASP A 388 SHEET 3 AA3 3 ARG A 395 ILE A 397 -1 N SER A 396 O GLN A 405 LINK OD2 ASP A 242 MN MN A 502 1555 1555 2.08 LINK NE2 HIS A 244 MN MN A 502 1555 1555 2.14 LINK OD2 ASP A 271 MN MN A 501 1555 1555 2.28 LINK OD2 ASP A 271 MN MN A 502 1555 1555 2.14 LINK OD1 ASN A 303 MN MN A 501 1555 1555 2.09 LINK NE2 HIS A 352 MN MN A 501 1555 1555 2.16 LINK ND1 HIS A 427 MN MN A 501 1555 1555 2.17 LINK MN MN A 501 O04 LB1 A 503 1555 1555 2.12 LINK MN MN A 502 O02 LB1 A 503 1555 1555 2.19 LINK MN MN A 502 O04 LB1 A 503 1555 1555 2.18 LINK MN MN A 502 O01 LB1 A 503 1555 1555 2.28 SITE 1 AC1 6 ASP A 271 ASN A 303 HIS A 352 HIS A 427 SITE 2 AC1 6 MN A 502 LB1 A 503 SITE 1 AC2 5 ASP A 242 HIS A 244 ASP A 271 MN A 501 SITE 2 AC2 5 LB1 A 503 SITE 1 AC3 11 ASP A 242 HIS A 244 ASP A 271 HIS A 304 SITE 2 AC3 11 HIS A 352 HIS A 427 VAL A 429 PHE A 446 SITE 3 AC3 11 TYR A 451 MN A 501 MN A 502 SITE 1 AC4 4 ASN A 308 PRO A 376 ASP A 377 HOH A 689 SITE 1 AC5 3 LYS A 192 GLU A 255 HOH A 644 CRYST1 40.656 91.150 95.494 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024597 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010472 0.00000