HEADER STRUCTURAL PROTEIN 16-JUL-17 5WHF TITLE CRYSTAL STRUCTURE OF VIMENTIN COIL 1B PACKED IN A HIGH-ORDER TITLE 2 FILAMENTOUS FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIMENTIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: UNP RESIDUES 153-238; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE N-TERMINAL SEQUENCE GPHM IS A PART OF THE N- COMPND 7 TERMINAL TAG THAT IS LEFT AFTER THE CLEAVAGE OF MOST OF THE TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VIM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INTERMEDIATE FILAMENT, OLIGOMERIZATION, COILED COIL, HELICAL DOMAIN, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.M.OBIERO,A.H.PANG,O.V.TSODIKOV REVDAT 5 04-OCT-23 5WHF 1 REMARK REVDAT 4 04-DEC-19 5WHF 1 REMARK REVDAT 3 29-AUG-18 5WHF 1 JRNL REVDAT 2 27-JUN-18 5WHF 1 JRNL REVDAT 1 20-JUN-18 5WHF 0 JRNL AUTH A.H.PANG,J.M.OBIERO,A.W.KULCZYK,V.M.SVIRIPA,O.V.TSODIKOV JRNL TITL A CRYSTAL STRUCTURE OF COIL 1B OF VIMENTIN IN THE JRNL TITL 2 FILAMENTOUS FORM PROVIDES A MODEL OF A HIGH-ORDER ASSEMBLY JRNL TITL 3 OF A VIMENTIN FILAMENT. JRNL REF FEBS J. V. 285 2888 2018 JRNL REFN ISSN 1742-4658 JRNL PMID 29905014 JRNL DOI 10.1111/FEBS.14585 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 31868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9784 - 5.0012 0.97 3006 199 0.2756 0.2990 REMARK 3 2 5.0012 - 3.9707 0.99 3081 155 0.2050 0.2490 REMARK 3 3 3.9707 - 3.4691 0.98 3020 168 0.2171 0.2610 REMARK 3 4 3.4691 - 3.1520 0.92 2879 105 0.2478 0.3031 REMARK 3 5 3.1520 - 2.9262 0.88 2748 108 0.2563 0.3328 REMARK 3 6 2.9262 - 2.7537 0.87 2654 141 0.2533 0.2757 REMARK 3 7 2.7537 - 2.6158 0.88 2650 181 0.2488 0.3123 REMARK 3 8 2.6158 - 2.5020 0.85 2586 134 0.2239 0.2731 REMARK 3 9 2.5020 - 2.4056 0.84 2611 138 0.2351 0.2888 REMARK 3 10 2.4056 - 2.3226 0.83 2525 140 0.2249 0.2714 REMARK 3 11 2.3226 - 2.2500 0.82 2507 132 0.2104 0.2925 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5348 REMARK 3 ANGLE : 0.830 7175 REMARK 3 CHIRALITY : 0.044 851 REMARK 3 PLANARITY : 0.012 966 REMARK 3 DIHEDRAL : 21.350 2091 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229020. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32009 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 65.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.18900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3UF1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 0.2 M MAGNESIUM REMARK 280 ACETATE TETRAHYDRATE AND 10% PEG 8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.63500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -50.80851 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 122.91482 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 149 REMARK 465 PRO A 150 REMARK 465 HIS A 151 REMARK 465 MET A 152 REMARK 465 GLY B 149 REMARK 465 PRO B 150 REMARK 465 HIS B 151 REMARK 465 MET B 152 REMARK 465 GLU B 153 REMARK 465 LYS B 236 REMARK 465 LEU B 237 REMARK 465 HIS B 238 REMARK 465 LEU C 237 REMARK 465 HIS C 238 REMARK 465 GLY D 149 REMARK 465 PRO D 150 REMARK 465 HIS D 151 REMARK 465 MET D 152 REMARK 465 HIS D 238 REMARK 465 GLY E 149 REMARK 465 PRO E 150 REMARK 465 HIS E 151 REMARK 465 HIS E 238 REMARK 465 GLY F 149 REMARK 465 PRO F 150 REMARK 465 HIS F 151 REMARK 465 LYS F 236 REMARK 465 LEU F 237 REMARK 465 HIS F 238 REMARK 465 GLY G 149 REMARK 465 HIS G 238 REMARK 465 GLY H 149 REMARK 465 PRO H 150 REMARK 465 HIS H 151 REMARK 465 MET H 152 REMARK 465 LEU H 237 REMARK 465 HIS H 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 163 CG CD OE1 NE2 REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 MET A 183 CG SD CE REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 GLU A 191 CD OE1 OE2 REMARK 470 GLN A 195 CG CD OE1 NE2 REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 HIS A 238 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 154 CG SD CE REMARK 470 ARG B 155 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 156 CG CD OE1 OE2 REMARK 470 ARG B 159 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 163 CG CD OE1 NE2 REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 470 SER B 205 OG REMARK 470 GLU B 225 OE1 OE2 REMARK 470 GLU B 229 CG CD OE1 OE2 REMARK 470 HIS C 151 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 153 CG CD OE1 OE2 REMARK 470 GLU C 156 CG CD OE1 OE2 REMARK 470 GLU C 180 CG CD OE1 OE2 REMARK 470 ARG C 184 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 191 CG CD OE1 OE2 REMARK 470 GLU C 197 CG CD OE1 OE2 REMARK 470 GLN C 204 CG CD OE1 NE2 REMARK 470 GLN C 208 CG CD OE1 NE2 REMARK 470 GLU C 230 CG CD OE1 OE2 REMARK 470 LYS C 236 CG CD CE NZ REMARK 470 ARG D 155 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 156 CG CD OE1 OE2 REMARK 470 GLU D 191 OE1 OE2 REMARK 470 GLU D 197 CG CD OE1 OE2 REMARK 470 GLN D 204 CG CD OE1 NE2 REMARK 470 GLU D 225 CG CD OE1 OE2 REMARK 470 SER D 226 OG REMARK 470 LYS D 235 CG CD CE NZ REMARK 470 LYS D 236 CG CD CE NZ REMARK 470 MET E 152 CG SD CE REMARK 470 GLU E 153 CG CD OE1 OE2 REMARK 470 MET E 154 CG SD CE REMARK 470 ARG E 155 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 158 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 174 CG CD OE1 OE2 REMARK 470 GLU E 180 CG CD OE1 OE2 REMARK 470 MET E 183 CG SD CE REMARK 470 ARG E 184 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 187 CG CD OE1 OE2 REMARK 470 LYS E 188 CG CD CE NZ REMARK 470 GLU E 191 CG CD OE1 OE2 REMARK 470 GLN E 195 CG CD OE1 NE2 REMARK 470 GLU E 197 CG CD OE1 OE2 REMARK 470 GLN E 204 CG CD OE1 NE2 REMARK 470 SER E 205 O REMARK 470 ASP E 209 OD1 OD2 REMARK 470 GLU E 221 OE1 OE2 REMARK 470 LYS E 235 CG CD CE NZ REMARK 470 LEU E 237 CG CD1 CD2 REMARK 470 MET F 152 CG SD CE REMARK 470 GLU F 153 CG CD OE1 OE2 REMARK 470 ARG F 155 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 156 CG CD OE1 OE2 REMARK 470 GLN F 163 CG CD OE1 NE2 REMARK 470 ARG F 184 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 185 CG CD1 CD2 REMARK 470 LYS F 188 CG CD CE NZ REMARK 470 GLN F 190 CG CD OE1 NE2 REMARK 470 GLU F 191 CG CD OE1 OE2 REMARK 470 GLU F 197 CG CD OE1 OE2 REMARK 470 GLU F 198 CG CD OE1 OE2 REMARK 470 ASN F 201 CG OD1 ND2 REMARK 470 GLU F 225 CG CD OE1 OE2 REMARK 470 GLU F 229 CG CD OE1 OE2 REMARK 470 LYS F 235 CG CD CE NZ REMARK 470 HIS G 151 CG ND1 CD2 CE1 NE2 REMARK 470 MET G 152 CG SD CE REMARK 470 GLU G 153 CG CD OE1 OE2 REMARK 470 GLU G 156 CG CD OE1 OE2 REMARK 470 GLN G 163 CG CD OE1 NE2 REMARK 470 ASN G 166 CG OD1 ND2 REMARK 470 GLU G 180 CG CD OE1 OE2 REMARK 470 GLU G 191 CG CD OE1 OE2 REMARK 470 GLU G 197 CG CD OE1 OE2 REMARK 470 GLN G 204 CG CD OE1 NE2 REMARK 470 GLU G 225 OE1 OE2 REMARK 470 LEU G 237 CG CD1 CD2 REMARK 470 GLU H 153 CG CD OE1 OE2 REMARK 470 GLU H 156 CG CD OE1 OE2 REMARK 470 GLN H 160 CG CD OE1 NE2 REMARK 470 GLN H 195 CG CD OE1 NE2 REMARK 470 GLU H 197 CG CD OE1 OE2 REMARK 470 LYS H 223 CE NZ REMARK 470 GLU H 225 CG CD OE1 OE2 REMARK 470 GLU H 229 CD OE1 REMARK 470 LYS H 236 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS E 236 -83.40 -99.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 158 0.26 SIDE CHAIN REMARK 500 ARG D 222 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL G 301 DBREF 5WHF A 153 238 UNP P08670 VIME_HUMAN 153 238 DBREF 5WHF B 153 238 UNP P08670 VIME_HUMAN 153 238 DBREF 5WHF C 153 238 UNP P08670 VIME_HUMAN 153 238 DBREF 5WHF D 153 238 UNP P08670 VIME_HUMAN 153 238 DBREF 5WHF E 153 238 UNP P08670 VIME_HUMAN 153 238 DBREF 5WHF F 153 238 UNP P08670 VIME_HUMAN 153 238 DBREF 5WHF G 153 238 UNP P08670 VIME_HUMAN 153 238 DBREF 5WHF H 153 238 UNP P08670 VIME_HUMAN 153 238 SEQADV 5WHF GLY A 149 UNP P08670 EXPRESSION TAG SEQADV 5WHF PRO A 150 UNP P08670 EXPRESSION TAG SEQADV 5WHF HIS A 151 UNP P08670 EXPRESSION TAG SEQADV 5WHF MET A 152 UNP P08670 EXPRESSION TAG SEQADV 5WHF GLY B 149 UNP P08670 EXPRESSION TAG SEQADV 5WHF PRO B 150 UNP P08670 EXPRESSION TAG SEQADV 5WHF HIS B 151 UNP P08670 EXPRESSION TAG SEQADV 5WHF MET B 152 UNP P08670 EXPRESSION TAG SEQADV 5WHF GLY C 149 UNP P08670 EXPRESSION TAG SEQADV 5WHF PRO C 150 UNP P08670 EXPRESSION TAG SEQADV 5WHF HIS C 151 UNP P08670 EXPRESSION TAG SEQADV 5WHF MET C 152 UNP P08670 EXPRESSION TAG SEQADV 5WHF GLY D 149 UNP P08670 EXPRESSION TAG SEQADV 5WHF PRO D 150 UNP P08670 EXPRESSION TAG SEQADV 5WHF HIS D 151 UNP P08670 EXPRESSION TAG SEQADV 5WHF MET D 152 UNP P08670 EXPRESSION TAG SEQADV 5WHF GLY E 149 UNP P08670 EXPRESSION TAG SEQADV 5WHF PRO E 150 UNP P08670 EXPRESSION TAG SEQADV 5WHF HIS E 151 UNP P08670 EXPRESSION TAG SEQADV 5WHF MET E 152 UNP P08670 EXPRESSION TAG SEQADV 5WHF GLY F 149 UNP P08670 EXPRESSION TAG SEQADV 5WHF PRO F 150 UNP P08670 EXPRESSION TAG SEQADV 5WHF HIS F 151 UNP P08670 EXPRESSION TAG SEQADV 5WHF MET F 152 UNP P08670 EXPRESSION TAG SEQADV 5WHF GLY G 149 UNP P08670 EXPRESSION TAG SEQADV 5WHF PRO G 150 UNP P08670 EXPRESSION TAG SEQADV 5WHF HIS G 151 UNP P08670 EXPRESSION TAG SEQADV 5WHF MET G 152 UNP P08670 EXPRESSION TAG SEQADV 5WHF GLY H 149 UNP P08670 EXPRESSION TAG SEQADV 5WHF PRO H 150 UNP P08670 EXPRESSION TAG SEQADV 5WHF HIS H 151 UNP P08670 EXPRESSION TAG SEQADV 5WHF MET H 152 UNP P08670 EXPRESSION TAG SEQRES 1 A 90 GLY PRO HIS MET GLU MET ARG GLU LEU ARG ARG GLN VAL SEQRES 2 A 90 ASP GLN LEU THR ASN ASP LYS ALA ARG VAL GLU VAL GLU SEQRES 3 A 90 ARG ASP ASN LEU ALA GLU ASP ILE MET ARG LEU ARG GLU SEQRES 4 A 90 LYS LEU GLN GLU GLU MET LEU GLN ARG GLU GLU ALA GLU SEQRES 5 A 90 ASN THR LEU GLN SER PHE ARG GLN ASP VAL ASP ASN ALA SEQRES 6 A 90 SER LEU ALA ARG LEU ASP LEU GLU ARG LYS VAL GLU SER SEQRES 7 A 90 LEU GLN GLU GLU ILE ALA PHE LEU LYS LYS LEU HIS SEQRES 1 B 90 GLY PRO HIS MET GLU MET ARG GLU LEU ARG ARG GLN VAL SEQRES 2 B 90 ASP GLN LEU THR ASN ASP LYS ALA ARG VAL GLU VAL GLU SEQRES 3 B 90 ARG ASP ASN LEU ALA GLU ASP ILE MET ARG LEU ARG GLU SEQRES 4 B 90 LYS LEU GLN GLU GLU MET LEU GLN ARG GLU GLU ALA GLU SEQRES 5 B 90 ASN THR LEU GLN SER PHE ARG GLN ASP VAL ASP ASN ALA SEQRES 6 B 90 SER LEU ALA ARG LEU ASP LEU GLU ARG LYS VAL GLU SER SEQRES 7 B 90 LEU GLN GLU GLU ILE ALA PHE LEU LYS LYS LEU HIS SEQRES 1 C 90 GLY PRO HIS MET GLU MET ARG GLU LEU ARG ARG GLN VAL SEQRES 2 C 90 ASP GLN LEU THR ASN ASP LYS ALA ARG VAL GLU VAL GLU SEQRES 3 C 90 ARG ASP ASN LEU ALA GLU ASP ILE MET ARG LEU ARG GLU SEQRES 4 C 90 LYS LEU GLN GLU GLU MET LEU GLN ARG GLU GLU ALA GLU SEQRES 5 C 90 ASN THR LEU GLN SER PHE ARG GLN ASP VAL ASP ASN ALA SEQRES 6 C 90 SER LEU ALA ARG LEU ASP LEU GLU ARG LYS VAL GLU SER SEQRES 7 C 90 LEU GLN GLU GLU ILE ALA PHE LEU LYS LYS LEU HIS SEQRES 1 D 90 GLY PRO HIS MET GLU MET ARG GLU LEU ARG ARG GLN VAL SEQRES 2 D 90 ASP GLN LEU THR ASN ASP LYS ALA ARG VAL GLU VAL GLU SEQRES 3 D 90 ARG ASP ASN LEU ALA GLU ASP ILE MET ARG LEU ARG GLU SEQRES 4 D 90 LYS LEU GLN GLU GLU MET LEU GLN ARG GLU GLU ALA GLU SEQRES 5 D 90 ASN THR LEU GLN SER PHE ARG GLN ASP VAL ASP ASN ALA SEQRES 6 D 90 SER LEU ALA ARG LEU ASP LEU GLU ARG LYS VAL GLU SER SEQRES 7 D 90 LEU GLN GLU GLU ILE ALA PHE LEU LYS LYS LEU HIS SEQRES 1 E 90 GLY PRO HIS MET GLU MET ARG GLU LEU ARG ARG GLN VAL SEQRES 2 E 90 ASP GLN LEU THR ASN ASP LYS ALA ARG VAL GLU VAL GLU SEQRES 3 E 90 ARG ASP ASN LEU ALA GLU ASP ILE MET ARG LEU ARG GLU SEQRES 4 E 90 LYS LEU GLN GLU GLU MET LEU GLN ARG GLU GLU ALA GLU SEQRES 5 E 90 ASN THR LEU GLN SER PHE ARG GLN ASP VAL ASP ASN ALA SEQRES 6 E 90 SER LEU ALA ARG LEU ASP LEU GLU ARG LYS VAL GLU SER SEQRES 7 E 90 LEU GLN GLU GLU ILE ALA PHE LEU LYS LYS LEU HIS SEQRES 1 F 90 GLY PRO HIS MET GLU MET ARG GLU LEU ARG ARG GLN VAL SEQRES 2 F 90 ASP GLN LEU THR ASN ASP LYS ALA ARG VAL GLU VAL GLU SEQRES 3 F 90 ARG ASP ASN LEU ALA GLU ASP ILE MET ARG LEU ARG GLU SEQRES 4 F 90 LYS LEU GLN GLU GLU MET LEU GLN ARG GLU GLU ALA GLU SEQRES 5 F 90 ASN THR LEU GLN SER PHE ARG GLN ASP VAL ASP ASN ALA SEQRES 6 F 90 SER LEU ALA ARG LEU ASP LEU GLU ARG LYS VAL GLU SER SEQRES 7 F 90 LEU GLN GLU GLU ILE ALA PHE LEU LYS LYS LEU HIS SEQRES 1 G 90 GLY PRO HIS MET GLU MET ARG GLU LEU ARG ARG GLN VAL SEQRES 2 G 90 ASP GLN LEU THR ASN ASP LYS ALA ARG VAL GLU VAL GLU SEQRES 3 G 90 ARG ASP ASN LEU ALA GLU ASP ILE MET ARG LEU ARG GLU SEQRES 4 G 90 LYS LEU GLN GLU GLU MET LEU GLN ARG GLU GLU ALA GLU SEQRES 5 G 90 ASN THR LEU GLN SER PHE ARG GLN ASP VAL ASP ASN ALA SEQRES 6 G 90 SER LEU ALA ARG LEU ASP LEU GLU ARG LYS VAL GLU SER SEQRES 7 G 90 LEU GLN GLU GLU ILE ALA PHE LEU LYS LYS LEU HIS SEQRES 1 H 90 GLY PRO HIS MET GLU MET ARG GLU LEU ARG ARG GLN VAL SEQRES 2 H 90 ASP GLN LEU THR ASN ASP LYS ALA ARG VAL GLU VAL GLU SEQRES 3 H 90 ARG ASP ASN LEU ALA GLU ASP ILE MET ARG LEU ARG GLU SEQRES 4 H 90 LYS LEU GLN GLU GLU MET LEU GLN ARG GLU GLU ALA GLU SEQRES 5 H 90 ASN THR LEU GLN SER PHE ARG GLN ASP VAL ASP ASN ALA SEQRES 6 H 90 SER LEU ALA ARG LEU ASP LEU GLU ARG LYS VAL GLU SER SEQRES 7 H 90 LEU GLN GLU GLU ILE ALA PHE LEU LYS LYS LEU HIS HET GOL G 301 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *127(H2 O) HELIX 1 AA1 GLU A 153 LYS A 236 1 84 HELIX 2 AA2 ARG B 155 LYS B 235 1 81 HELIX 3 AA3 PRO C 150 LYS C 236 1 87 HELIX 4 AA4 MET D 154 LYS D 236 1 83 HELIX 5 AA5 GLU E 153 LYS E 235 1 83 HELIX 6 AA6 GLU F 153 LYS F 235 1 83 HELIX 7 AA7 HIS G 151 LYS G 236 1 86 HELIX 8 AA8 MET H 154 LYS H 236 1 83 SITE 1 AC1 3 GLN D 228 ASN G 201 THR G 202 CRYST1 39.990 77.270 123.390 90.00 95.03 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025006 0.000000 0.002201 0.00000 SCALE2 0.000000 0.012942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008136 0.00000