HEADER APOPTOSIS 17-JUL-17 5WHH TITLE CRYSTAL STRUCTURE OF BCL-2-RELATED PROTEIN A1 IN COMPLEX WITH STAPLED TITLE 2 PEPTIDE (AQ7)T(0EH)LRRFGD(MK8)INFRQ(NH2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-RELATED PROTEIN A1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-2-LIKE PROTEIN 5,BCL2-L-5,HEMOPOIETIC-SPECIFIC EARLY COMPND 5 RESPONSE PROTEIN,PROTEIN BFL-1,PROTEIN GRS; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: (AQ7)T(0EH)LRRFGD(MK8)INFRQ(NH2); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2A1, BCL2L5, BFL1, GRS, HBPA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS APOPTOSIS, STAPLED PEPTIDE EXPDTA X-RAY DIFFRACTION AUTHOR H.-S.SEO,S.DHE-PAGANON REVDAT 3 15-NOV-23 5WHH 1 LINK ATOM REVDAT 2 04-OCT-23 5WHH 1 REMARK REVDAT 1 17-JAN-18 5WHH 0 JRNL AUTH E.P.HARVEY,H.S.SEO,R.M.GUERRA,G.H.BIRD,S.DHE-PAGANON, JRNL AUTH 2 L.D.WALENSKY JRNL TITL CRYSTAL STRUCTURES OF ANTI-APOPTOTIC BFL-1 AND ITS COMPLEX JRNL TITL 2 WITH A COVALENT STAPLED PEPTIDE INHIBITOR. JRNL REF STRUCTURE V. 26 153 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29276033 JRNL DOI 10.1016/J.STR.2017.11.016 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 7150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3622 - 3.4327 1.00 2346 117 0.1810 0.2387 REMARK 3 2 3.4327 - 2.7248 1.00 2250 134 0.2351 0.3534 REMARK 3 3 2.7248 - 2.3804 0.98 2194 109 0.2848 0.3652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1305 REMARK 3 ANGLE : 0.604 1772 REMARK 3 CHIRALITY : 0.041 196 REMARK 3 PLANARITY : 0.005 229 REMARK 3 DIHEDRAL : 8.810 767 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4767 30.4174 35.8118 REMARK 3 T TENSOR REMARK 3 T11: 0.4509 T22: 0.3217 REMARK 3 T33: 0.3414 T12: -0.0016 REMARK 3 T13: 0.0385 T23: -0.0310 REMARK 3 L TENSOR REMARK 3 L11: 2.9151 L22: 2.5748 REMARK 3 L33: 3.9158 L12: -2.3882 REMARK 3 L13: -0.1137 L23: -0.0090 REMARK 3 S TENSOR REMARK 3 S11: 0.4817 S12: 0.6986 S13: 0.5251 REMARK 3 S21: -0.2304 S22: -0.3183 S23: -0.4856 REMARK 3 S31: 0.1189 S32: -0.0108 S33: -0.1166 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1415 26.3338 28.8315 REMARK 3 T TENSOR REMARK 3 T11: 0.8771 T22: 0.4969 REMARK 3 T33: 0.5844 T12: 0.1500 REMARK 3 T13: 0.1487 T23: -0.0908 REMARK 3 L TENSOR REMARK 3 L11: 5.0353 L22: 8.0868 REMARK 3 L33: 0.4356 L12: -4.5403 REMARK 3 L13: 1.2526 L23: -0.4289 REMARK 3 S TENSOR REMARK 3 S11: -0.2297 S12: 0.8912 S13: -0.4543 REMARK 3 S21: -0.7813 S22: -0.1158 S23: -1.4386 REMARK 3 S31: 1.2852 S32: 0.5397 S33: 0.1685 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9731 36.1267 42.8009 REMARK 3 T TENSOR REMARK 3 T11: 0.5927 T22: 0.5435 REMARK 3 T33: 0.2598 T12: 0.0233 REMARK 3 T13: -0.0315 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 3.0250 L22: 3.2017 REMARK 3 L33: 0.6771 L12: -0.8255 REMARK 3 L13: 0.1112 L23: 0.3485 REMARK 3 S TENSOR REMARK 3 S11: -0.2001 S12: -0.2672 S13: -0.2448 REMARK 3 S21: 0.2807 S22: 0.2107 S23: 0.5755 REMARK 3 S31: -0.1117 S32: -0.2912 S33: -0.0496 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4646 45.5022 45.4758 REMARK 3 T TENSOR REMARK 3 T11: 0.3576 T22: 0.3375 REMARK 3 T33: 0.3088 T12: -0.0187 REMARK 3 T13: 0.0411 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 4.3234 L22: 6.5708 REMARK 3 L33: 8.8227 L12: 0.9842 REMARK 3 L13: 1.3310 L23: -3.7890 REMARK 3 S TENSOR REMARK 3 S11: 0.3510 S12: -0.1080 S13: 0.1139 REMARK 3 S21: 0.2730 S22: 0.1409 S23: 0.2231 REMARK 3 S31: -0.1599 S32: 0.8796 S33: -0.5054 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6983 37.4459 45.5330 REMARK 3 T TENSOR REMARK 3 T11: 0.3217 T22: 0.2449 REMARK 3 T33: 0.3102 T12: 0.0089 REMARK 3 T13: 0.0269 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.2490 L22: 2.0548 REMARK 3 L33: 8.7827 L12: -0.4586 REMARK 3 L13: 2.9048 L23: -2.9721 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: -0.3413 S13: 0.0912 REMARK 3 S21: 0.2994 S22: 0.0520 S23: 0.1446 REMARK 3 S31: -0.3045 S32: -0.6531 S33: -0.0378 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4333 46.2890 26.5998 REMARK 3 T TENSOR REMARK 3 T11: 0.4937 T22: 0.4947 REMARK 3 T33: 0.3641 T12: -0.0626 REMARK 3 T13: -0.0068 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 0.2882 L22: 2.5060 REMARK 3 L33: 3.0789 L12: -0.5807 REMARK 3 L13: -0.2393 L23: -0.1152 REMARK 3 S TENSOR REMARK 3 S11: 0.3795 S12: -0.3148 S13: 0.4975 REMARK 3 S21: 0.2555 S22: -0.0544 S23: -0.4731 REMARK 3 S31: 0.2804 S32: -0.0980 S33: -0.2338 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7289 30.1617 43.8767 REMARK 3 T TENSOR REMARK 3 T11: 0.4696 T22: 0.3344 REMARK 3 T33: 0.2859 T12: 0.0515 REMARK 3 T13: 0.0278 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 2.9717 L22: 3.4465 REMARK 3 L33: 4.5357 L12: 1.0695 REMARK 3 L13: 1.6813 L23: 0.5518 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: 0.0578 S13: -0.3092 REMARK 3 S21: -0.0709 S22: -0.1990 S23: -0.1880 REMARK 3 S31: 1.0729 S32: 0.3260 S33: 0.0903 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6233 32.2332 55.6425 REMARK 3 T TENSOR REMARK 3 T11: 0.7271 T22: 0.9301 REMARK 3 T33: 0.3467 T12: -0.2391 REMARK 3 T13: 0.0152 T23: -0.0886 REMARK 3 L TENSOR REMARK 3 L11: 5.2037 L22: 2.2009 REMARK 3 L33: 0.4651 L12: 0.1830 REMARK 3 L13: -0.3851 L23: -0.6959 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: 0.6330 S13: 0.2368 REMARK 3 S21: 0.4090 S22: -0.4803 S23: 0.5120 REMARK 3 S31: 1.0630 S32: -1.3771 S33: 0.6479 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7168 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 43.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3I1H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350 20%, 0.2M SODIUM MALONATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.90667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.45333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.45333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.90667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 327 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 338 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PRO A 150 REMARK 465 LYS A 151 REMARK 465 ARG B 88 REMARK 465 GLN B 89 REMARK 465 NH2 B 90 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 25 CG CD OE1 NE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 146 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 42 O HOH A 301 1.93 REMARK 500 OH TYR A 16 OE1 GLN A 45 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 28 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 26 166.35 -49.29 REMARK 500 SER A 28 -6.36 142.49 REMARK 500 PRO A 30 -163.91 -75.38 REMARK 500 SER A 43 -5.91 -59.38 REMARK 500 ASN A 137 36.59 -140.27 REMARK 500 ASN B 86 4.69 -68.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 109 DISTANCE = 6.38 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues 0EH B 77 REMARK 800 through ILE B 85 bound to THR B 76 DBREF 5WHH A 1 151 UNP Q16548 B2LA1_HUMAN 1 151 DBREF 5WHH B 75 90 PDB 5WHH 5WHH 75 90 SEQADV 5WHH MET A -9 UNP Q16548 INITIATING METHIONINE SEQADV 5WHH GLY A -8 UNP Q16548 EXPRESSION TAG SEQADV 5WHH HIS A -7 UNP Q16548 EXPRESSION TAG SEQADV 5WHH HIS A -6 UNP Q16548 EXPRESSION TAG SEQADV 5WHH HIS A -5 UNP Q16548 EXPRESSION TAG SEQADV 5WHH HIS A -4 UNP Q16548 EXPRESSION TAG SEQADV 5WHH HIS A -3 UNP Q16548 EXPRESSION TAG SEQADV 5WHH HIS A -2 UNP Q16548 EXPRESSION TAG SEQADV 5WHH SER A -1 UNP Q16548 EXPRESSION TAG SEQADV 5WHH HIS A 0 UNP Q16548 EXPRESSION TAG SEQADV 5WHH SER A 4 UNP Q16548 CYS 4 ENGINEERED MUTATION SEQADV 5WHH SER A 19 UNP Q16548 CYS 19 ENGINEERED MUTATION SEQRES 1 A 161 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET THR ASP SEQRES 2 A 161 SER GLU PHE GLY TYR ILE TYR ARG LEU ALA GLN ASP TYR SEQRES 3 A 161 LEU GLN SER VAL LEU GLN ILE PRO GLN PRO GLY SER GLY SEQRES 4 A 161 PRO SER LYS THR SER ARG VAL LEU GLN ASN VAL ALA PHE SEQRES 5 A 161 SER VAL GLN LYS GLU VAL GLU LYS ASN LEU LYS SER CYS SEQRES 6 A 161 LEU ASP ASN VAL ASN VAL VAL SER VAL ASP THR ALA ARG SEQRES 7 A 161 THR LEU PHE ASN GLN VAL MET GLU LYS GLU PHE GLU ASP SEQRES 8 A 161 GLY ILE ILE ASN TRP GLY ARG ILE VAL THR ILE PHE ALA SEQRES 9 A 161 PHE GLU GLY ILE LEU ILE LYS LYS LEU LEU ARG GLN GLN SEQRES 10 A 161 ILE ALA PRO ASP VAL ASP THR TYR LYS GLU ILE SER TYR SEQRES 11 A 161 PHE VAL ALA GLU PHE ILE MET ASN ASN THR GLY GLU TRP SEQRES 12 A 161 ILE ARG GLN ASN GLY GLY TRP GLU ASN GLY PHE VAL LYS SEQRES 13 A 161 LYS PHE GLU PRO LYS SEQRES 1 B 16 AQ7 THR 0EH LEU ARG ARG PHE GLY ASP MK8 ILE ASN PHE SEQRES 2 B 16 ARG GLN NH2 HET AQ7 B 75 17 HET 0EH B 77 12 HET MK8 B 84 9 HET CL A 201 1 HETNAM AQ7 N-[(3R)-1-PROPANOYLPIPERIDINE-3-CARBONYL]-L-ALANINE HETNAM 0EH (2R)-2-AMINO-2-METHYLNONANOIC ACID HETNAM MK8 2-METHYL-L-NORLEUCINE HETNAM CL CHLORIDE ION HETSYN AQ7 N-[(3R)-1-ACRYLOYLPIPERIDINE-3-CARBONYL]-L-ALANINE, HETSYN 2 AQ7 BOUND FORM FORMUL 2 AQ7 C12 H20 N2 O4 FORMUL 2 0EH C10 H21 N O2 FORMUL 2 MK8 C7 H15 N O2 FORMUL 3 CL CL 1- FORMUL 4 HOH *53(H2 O) HELIX 1 AA1 SER A 4 GLN A 22 1 19 HELIX 2 AA2 SER A 31 LEU A 52 1 22 HELIX 3 AA3 LEU A 52 ASP A 57 1 6 HELIX 4 AA4 SER A 63 PHE A 79 1 17 HELIX 5 AA5 ASN A 85 GLN A 107 1 23 HELIX 6 AA6 ASP A 113 GLN A 136 1 24 HELIX 7 AA7 GLY A 138 GLY A 143 1 6 HELIX 8 AA8 PHE A 144 GLU A 149 1 6 HELIX 9 AA9 AQ7 B 75 THR B 76 5 2 HELIX 10 AB1 LEU B 78 LEU B 78 5 1 HELIX 11 AB2 ARG B 79 ASN B 86 1 8 LINK SG CYS A 55 C11 AQ7 B 75 1555 1555 1.74 LINK C AQ7 B 75 N THR B 76 1555 1555 1.33 LINK C THR B 76 N 0EH B 77 1555 1555 1.33 LINK C 0EH B 77 N LEU B 78 1555 1555 1.33 LINK CAT 0EH B 77 CE MK8 B 84 1555 1555 1.33 LINK C ASP B 83 N MK8 B 84 1555 1555 1.33 LINK C MK8 B 84 N ILE B 85 1555 1555 1.33 SITE 1 AC1 2 ARG A 68 AQ7 B 75 SITE 1 AC2 19 SER A 43 VAL A 44 ASN A 51 VAL A 74 SITE 2 AC2 19 GLU A 78 ASN A 85 ARG A 88 THR A 91 SITE 3 AC2 19 PHE A 148 AQ7 B 75 THR B 76 ARG B 79 SITE 4 AC2 19 ARG B 80 PHE B 81 GLY B 82 ASN B 86 SITE 5 AC2 19 PHE B 87 HOH B 101 HOH B 105 CRYST1 86.710 86.710 40.360 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011533 0.006658 0.000000 0.00000 SCALE2 0.000000 0.013317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024777 0.00000