HEADER HYDROLASE 19-JUL-17 5WIB TITLE STRUCTURE OF ACINETOBACTER BAUMANNII CARBAPENEMASE OXA-239 K82D BOUND TITLE 2 TO IMIPENEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXA-239; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP. ENRICHMENT CULTURE CLONE SOURCE 3 8407; SOURCE 4 ORGANISM_TAXID: 1182652; SOURCE 5 VARIANT: K82D; SOURCE 6 GENE: OXA-239; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS BETA-LACTAMASE, ANTIBIOTIC RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.M.HARPER,C.M.JUNE,R.A.POWERS,D.A.LEONARD REVDAT 5 23-OCT-24 5WIB 1 REMARK REVDAT 4 04-OCT-23 5WIB 1 REMARK REVDAT 3 11-DEC-19 5WIB 1 REMARK REVDAT 2 24-JAN-18 5WIB 1 JRNL REVDAT 1 27-DEC-17 5WIB 0 JRNL AUTH T.M.HARPER,C.M.JUNE,M.A.TARACILA,R.A.BONOMO,R.A.POWERS, JRNL AUTH 2 D.A.LEONARD JRNL TITL MULTIPLE SUBSTITUTIONS LEAD TO INCREASED LOOP FLEXIBILITY JRNL TITL 2 AND EXPANDED SPECIFICITY IN ACINETOBACTER BAUMANNII JRNL TITL 3 CARBAPENEMASE OXA-239. JRNL REF BIOCHEM. J. V. 475 273 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 29229762 JRNL DOI 10.1042/BCJ20170702 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 50364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2613 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3686 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3743 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.88000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -1.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.320 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3875 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3569 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5256 ; 1.231 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8280 ; 0.664 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 484 ; 7.837 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;37.810 ;25.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;13.629 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;10.623 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 597 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4317 ; 0.020 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 745 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1933 ; 3.017 ; 2.563 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1932 ; 3.017 ; 2.563 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2415 ; 4.059 ; 3.826 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2416 ; 4.058 ; 3.826 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1942 ; 3.793 ; 2.831 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1940 ; 3.794 ; 2.828 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2841 ; 5.379 ; 4.126 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4499 ; 7.614 ;31.444 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4459 ; 7.540 ;31.051 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 31 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2870 34.9080 44.0210 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.2051 REMARK 3 T33: 0.0238 T12: -0.0564 REMARK 3 T13: -0.0313 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 3.9505 L22: 1.5439 REMARK 3 L33: 1.7503 L12: -0.2566 REMARK 3 L13: -0.1612 L23: -0.3924 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.3696 S13: 0.1260 REMARK 3 S21: -0.2293 S22: 0.0968 S23: 0.1444 REMARK 3 S31: -0.0515 S32: -0.1469 S33: -0.0506 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 273 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8050 2.7890 54.3540 REMARK 3 T TENSOR REMARK 3 T11: 0.0625 T22: 0.1992 REMARK 3 T33: 0.0577 T12: -0.0156 REMARK 3 T13: 0.0377 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 1.3229 L22: 6.0077 REMARK 3 L33: 1.5895 L12: 0.7772 REMARK 3 L13: -0.4181 L23: -0.6923 REMARK 3 S TENSOR REMARK 3 S11: 0.0338 S12: -0.0883 S13: -0.1467 REMARK 3 S21: 0.3429 S22: -0.2039 S23: -0.0130 REMARK 3 S31: 0.0499 S32: 0.0784 S33: 0.1701 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53055 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.868 REMARK 200 RESOLUTION RANGE LOW (A) : 81.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.86600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4K0X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NAH2PO4, 100 MM CITRIC ACID, REMARK 280 200 MM NACL, 20% PEG 8000, PH 4.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.19900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.37200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.19900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.37200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 HIS A 22 REMARK 465 ASN A 23 REMARK 465 LEU A 24 REMARK 465 ILE A 25 REMARK 465 ASN A 26 REMARK 465 GLU A 27 REMARK 465 THR A 28 REMARK 465 PRO A 29 REMARK 465 SER A 30 REMARK 465 MET B 21 REMARK 465 HIS B 22 REMARK 465 ASN B 23 REMARK 465 LEU B 24 REMARK 465 ILE B 25 REMARK 465 ASN B 26 REMARK 465 GLU B 27 REMARK 465 THR B 28 REMARK 465 PRO B 29 REMARK 465 LYS B 102 REMARK 465 TRP B 103 REMARK 465 LYS B 104 REMARK 465 GLY B 105 REMARK 465 GLU B 106 REMARK 465 LYS B 107 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 31 CG CD OE1 NE2 REMARK 470 THR A 57 OG1 CG2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ILE A 223 CG1 CG2 CD1 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 SER B 30 OG REMARK 470 GLN B 31 CG CD OE1 NE2 REMARK 470 VAL B 33 CG1 CG2 REMARK 470 GLN B 34 CG CD OE1 NE2 REMARK 470 HIS B 36 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 THR B 111 OG1 CG2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 ASP B 116 CG OD1 OD2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 LYS B 194 CG CD CE NZ REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 LYS B 268 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 496 O HOH A 508 1.80 REMARK 500 O HOH B 463 O HOH B 467 2.05 REMARK 500 O HOH B 436 O HOH B 463 2.07 REMARK 500 NE ARG A 136 O HOH A 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 36 96.99 -67.18 REMARK 500 ASP A 58 71.75 60.85 REMARK 500 LYS A 59 19.59 50.12 REMARK 500 ALA A 78 -135.59 53.27 REMARK 500 ALA A 127 97.21 -69.83 REMARK 500 GLU A 207 96.13 -163.04 REMARK 500 ASP B 58 -126.33 54.69 REMARK 500 ALA B 78 -134.43 34.57 REMARK 500 ASN B 163 14.13 -148.87 REMARK 500 SER B 192 139.88 -39.05 REMARK 500 ASN B 222 58.88 -113.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 131 0.10 SIDE CHAIN REMARK 500 TYR B 131 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ID1 A 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ID1 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ID1 B 301 and SER B REMARK 800 79 DBREF 5WIB A 22 273 UNP I6YCI1 I6YCI1_9GAMM 22 273 DBREF 5WIB B 22 273 UNP I6YCI1 I6YCI1_9GAMM 22 273 SEQADV 5WIB MET A 21 UNP I6YCI1 EXPRESSION TAG SEQADV 5WIB ASP A 82 UNP I6YCI1 LYS 82 ENGINEERED MUTATION SEQADV 5WIB MET B 21 UNP I6YCI1 EXPRESSION TAG SEQADV 5WIB ASP B 82 UNP I6YCI1 LYS 82 ENGINEERED MUTATION SEQRES 1 A 253 MET HIS ASN LEU ILE ASN GLU THR PRO SER GLN ILE VAL SEQRES 2 A 253 GLN GLY HIS ASN GLN VAL ILE HIS GLN TYR PHE ASP GLU SEQRES 3 A 253 LYS ASN THR SER GLY VAL LEU VAL ILE GLN THR ASP LYS SEQRES 4 A 253 LYS ILE ASN LEU TYR GLY ASN ALA LEU SER ARG ALA ASN SEQRES 5 A 253 THR GLU TYR VAL PRO ALA SER THR PHE ASP MET LEU ASN SEQRES 6 A 253 ALA LEU ILE GLY LEU GLU ASN GLN LYS THR ASP ILE ASN SEQRES 7 A 253 GLU ILE PHE LYS TRP LYS GLY GLU LYS ARG LEU PHE THR SEQRES 8 A 253 ALA TRP GLU LYS ASP MET THR LEU GLY GLU ALA MET LYS SEQRES 9 A 253 LEU SER ALA VAL PRO VAL TYR GLN GLU LEU ALA ARG ARG SEQRES 10 A 253 ILE GLY LEU ASP LEU MET GLN LYS GLU VAL LYS ARG ILE SEQRES 11 A 253 GLY PHE GLY ASN ALA GLU ILE GLY GLN GLN VAL ASP ASN SEQRES 12 A 253 PHE TRP LEU VAL GLY PRO LEU LYS VAL THR PRO ILE GLN SEQRES 13 A 253 GLU VAL GLU PHE VAL SER GLN LEU ALA HIS THR GLN LEU SEQRES 14 A 253 PRO PHE SER GLU LYS VAL GLN ALA ASN VAL LYS ASN MET SEQRES 15 A 253 LEU LEU LEU GLU GLU SER ASN GLY TYR LYS ILE PHE GLY SEQRES 16 A 253 LYS THR GLY TRP ALA MET ASN ILE LYS SER GLN VAL GLY SEQRES 17 A 253 TRP LEU THR GLY TRP VAL GLU GLN PRO ASP GLY LYS ILE SEQRES 18 A 253 VAL ALA PHE ALA LEU ASN MET GLU MET ARG SER GLU MET SEQRES 19 A 253 PRO ALA SER ILE ARG ASN GLU LEU LEU MET LYS SER LEU SEQRES 20 A 253 LYS GLN LEU ASN ILE ILE SEQRES 1 B 253 MET HIS ASN LEU ILE ASN GLU THR PRO SER GLN ILE VAL SEQRES 2 B 253 GLN GLY HIS ASN GLN VAL ILE HIS GLN TYR PHE ASP GLU SEQRES 3 B 253 LYS ASN THR SER GLY VAL LEU VAL ILE GLN THR ASP LYS SEQRES 4 B 253 LYS ILE ASN LEU TYR GLY ASN ALA LEU SER ARG ALA ASN SEQRES 5 B 253 THR GLU TYR VAL PRO ALA SER THR PHE ASP MET LEU ASN SEQRES 6 B 253 ALA LEU ILE GLY LEU GLU ASN GLN LYS THR ASP ILE ASN SEQRES 7 B 253 GLU ILE PHE LYS TRP LYS GLY GLU LYS ARG LEU PHE THR SEQRES 8 B 253 ALA TRP GLU LYS ASP MET THR LEU GLY GLU ALA MET LYS SEQRES 9 B 253 LEU SER ALA VAL PRO VAL TYR GLN GLU LEU ALA ARG ARG SEQRES 10 B 253 ILE GLY LEU ASP LEU MET GLN LYS GLU VAL LYS ARG ILE SEQRES 11 B 253 GLY PHE GLY ASN ALA GLU ILE GLY GLN GLN VAL ASP ASN SEQRES 12 B 253 PHE TRP LEU VAL GLY PRO LEU LYS VAL THR PRO ILE GLN SEQRES 13 B 253 GLU VAL GLU PHE VAL SER GLN LEU ALA HIS THR GLN LEU SEQRES 14 B 253 PRO PHE SER GLU LYS VAL GLN ALA ASN VAL LYS ASN MET SEQRES 15 B 253 LEU LEU LEU GLU GLU SER ASN GLY TYR LYS ILE PHE GLY SEQRES 16 B 253 LYS THR GLY TRP ALA MET ASN ILE LYS SER GLN VAL GLY SEQRES 17 B 253 TRP LEU THR GLY TRP VAL GLU GLN PRO ASP GLY LYS ILE SEQRES 18 B 253 VAL ALA PHE ALA LEU ASN MET GLU MET ARG SER GLU MET SEQRES 19 B 253 PRO ALA SER ILE ARG ASN GLU LEU LEU MET LYS SER LEU SEQRES 20 B 253 LYS GLN LEU ASN ILE ILE HET ID1 A 301 15 HET ID1 B 301 20 HETNAM ID1 IMIPENEM FORMUL 3 ID1 2(C12 H19 N3 O4 S) FORMUL 5 HOH *226(H2 O) HELIX 1 AA1 ASN A 37 LYS A 47 1 11 HELIX 2 AA2 ALA A 67 THR A 73 5 7 HELIX 3 AA3 PRO A 77 THR A 80 5 4 HELIX 4 AA4 PHE A 81 ASN A 92 1 12 HELIX 5 AA5 PHE A 110 GLU A 114 5 5 HELIX 6 AA6 LEU A 119 SER A 126 1 8 HELIX 7 AA7 ALA A 127 GLY A 139 1 13 HELIX 8 AA8 GLY A 139 GLY A 151 1 13 HELIX 9 AA9 THR A 173 HIS A 186 1 14 HELIX 10 AB1 SER A 192 ASN A 201 1 10 HELIX 11 AB2 SER A 257 LEU A 270 1 14 HELIX 12 AB3 ASN B 37 GLU B 46 1 10 HELIX 13 AB4 ALA B 67 THR B 73 5 7 HELIX 14 AB5 PRO B 77 THR B 80 5 4 HELIX 15 AB6 PHE B 81 ASN B 92 1 12 HELIX 16 AB7 THR B 111 LYS B 115 5 5 HELIX 17 AB8 THR B 118 SER B 126 1 9 HELIX 18 AB9 ALA B 127 GLY B 139 1 13 HELIX 19 AC1 GLY B 139 GLY B 151 1 13 HELIX 20 AC2 ASN B 163 GLY B 168 1 6 HELIX 21 AC3 THR B 173 HIS B 186 1 14 HELIX 22 AC4 SER B 192 ASN B 201 1 10 HELIX 23 AC5 SER B 257 LEU B 270 1 14 SHEET 1 AA1 7 ILE A 32 GLN A 34 0 SHEET 2 AA1 7 LYS A 60 GLY A 65 1 O ILE A 61 N VAL A 33 SHEET 3 AA1 7 GLY A 51 THR A 57 -1 N LEU A 53 O TYR A 64 SHEET 4 AA1 7 ILE A 241 GLU A 249 -1 O ASN A 247 N VAL A 52 SHEET 5 AA1 7 VAL A 227 GLU A 235 -1 N VAL A 234 O VAL A 242 SHEET 6 AA1 7 TYR A 211 ALA A 220 -1 N GLY A 218 O TRP A 229 SHEET 7 AA1 7 LEU A 204 SER A 208 -1 N LEU A 205 O ILE A 213 SHEET 1 AA2 2 ILE A 100 PHE A 101 0 SHEET 2 AA2 2 MET A 117 THR A 118 -1 O MET A 117 N PHE A 101 SHEET 1 AA3 7 GLN B 31 GLN B 34 0 SHEET 2 AA3 7 LYS B 60 GLY B 65 1 O ILE B 61 N GLN B 31 SHEET 3 AA3 7 GLY B 51 THR B 57 -1 N ILE B 55 O ASN B 62 SHEET 4 AA3 7 ILE B 241 GLU B 249 -1 O ASN B 247 N VAL B 52 SHEET 5 AA3 7 VAL B 227 GLU B 235 -1 N VAL B 234 O VAL B 242 SHEET 6 AA3 7 TYR B 211 ALA B 220 -1 N GLY B 218 O TRP B 229 SHEET 7 AA3 7 LEU B 204 SER B 208 -1 N LEU B 205 O ILE B 213 LINK OG SER A 79 C7 ID1 A 301 1555 1555 1.47 LINK OG SER B 79 C7 ID1 B 301 1555 1555 1.45 CISPEP 1 GLY A 168 PRO A 169 0 18.47 CISPEP 2 GLY B 168 PRO B 169 0 16.43 SITE 1 AC1 10 ALA A 78 SER A 79 TRP A 113 VAL A 128 SITE 2 AC1 10 LEU A 166 THR A 217 GLY A 218 TRP A 219 SITE 3 AC1 10 MET A 221 ARG A 259 SITE 1 AC2 14 PRO B 77 ALA B 78 THR B 80 PHE B 81 SITE 2 AC2 14 ASP B 82 TRP B 113 VAL B 128 LEU B 166 SITE 3 AC2 14 LYS B 216 THR B 217 GLY B 218 TRP B 219 SITE 4 AC2 14 MET B 221 ARG B 259 CRYST1 98.398 144.744 43.950 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010163 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022753 0.00000