HEADER FLUORESCENT PROTEIN 21-JUL-17 5WJ4 TITLE CRYSTAL STRUCTURE OF REDOX-SENSITIVE GREEN FLUORESCENT PROTEIN CLOVER TITLE 2 MUTANT ROCLOVER1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FLUORESCENT PROTEIN, CLOVER, GFP, BETA BARREL EXPDTA X-RAY DIFFRACTION AUTHOR C.LIU,B.C.CAMPBELL,G.A.PETSKO REVDAT 6 15-NOV-23 5WJ4 1 REMARK REVDAT 5 04-OCT-23 5WJ4 1 REMARK REVDAT 4 14-FEB-18 5WJ4 1 JRNL REVDAT 3 31-JAN-18 5WJ4 1 TITLE COMPND REMARK DBREF REVDAT 3 2 1 SEQADV ATOM REVDAT 2 24-JAN-18 5WJ4 1 JRNL REVDAT 1 17-JAN-18 5WJ4 0 JRNL AUTH B.C.CAMPBELL,G.A.PETSKO,C.F.LIU JRNL TITL CRYSTAL STRUCTURE OF GREEN FLUORESCENT PROTEIN CLOVER AND JRNL TITL 2 DESIGN OF CLOVER-BASED REDOX SENSORS. JRNL REF STRUCTURE V. 26 225 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29307487 JRNL DOI 10.1016/J.STR.2017.12.006 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 79118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1966 - 4.9495 1.00 2924 144 0.1585 0.1746 REMARK 3 2 4.9495 - 3.9297 1.00 2795 158 0.1298 0.1498 REMARK 3 3 3.9297 - 3.4333 1.00 2743 125 0.1538 0.1803 REMARK 3 4 3.4333 - 3.1195 1.00 2721 154 0.1566 0.1927 REMARK 3 5 3.1195 - 2.8960 1.00 2733 132 0.1600 0.1773 REMARK 3 6 2.8960 - 2.7253 1.00 2706 137 0.1670 0.1942 REMARK 3 7 2.7253 - 2.5889 1.00 2670 170 0.1613 0.2060 REMARK 3 8 2.5889 - 2.4762 1.00 2692 123 0.1578 0.1754 REMARK 3 9 2.4762 - 2.3809 1.00 2681 145 0.1593 0.2027 REMARK 3 10 2.3809 - 2.2987 1.00 2694 137 0.1559 0.1992 REMARK 3 11 2.2987 - 2.2269 1.00 2656 151 0.1569 0.2029 REMARK 3 12 2.2269 - 2.1632 1.00 2682 132 0.1535 0.2029 REMARK 3 13 2.1632 - 2.1063 1.00 2663 154 0.1633 0.1969 REMARK 3 14 2.1063 - 2.0549 1.00 2669 155 0.1642 0.2274 REMARK 3 15 2.0549 - 2.0082 1.00 2629 153 0.1616 0.1938 REMARK 3 16 2.0082 - 1.9654 1.00 2661 143 0.1594 0.1763 REMARK 3 17 1.9654 - 1.9261 1.00 2681 123 0.1636 0.1828 REMARK 3 18 1.9261 - 1.8898 1.00 2647 150 0.1860 0.2339 REMARK 3 19 1.8898 - 1.8560 1.00 2649 145 0.1875 0.2368 REMARK 3 20 1.8560 - 1.8246 1.00 2651 128 0.1906 0.2243 REMARK 3 21 1.8246 - 1.7951 1.00 2678 136 0.1925 0.2141 REMARK 3 22 1.7951 - 1.7675 1.00 2652 123 0.2175 0.2723 REMARK 3 23 1.7675 - 1.7415 1.00 2621 162 0.2214 0.2272 REMARK 3 24 1.7415 - 1.7170 1.00 2636 157 0.2485 0.2820 REMARK 3 25 1.7170 - 1.6938 1.00 2668 143 0.2636 0.3192 REMARK 3 26 1.6938 - 1.6718 1.00 2649 135 0.2788 0.2849 REMARK 3 27 1.6718 - 1.6509 1.00 2653 126 0.2987 0.3366 REMARK 3 28 1.6509 - 1.6310 1.00 2643 130 0.3183 0.3481 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 3741 REMARK 3 ANGLE : 1.365 5063 REMARK 3 CHIRALITY : 0.104 548 REMARK 3 PLANARITY : 0.009 664 REMARK 3 DIHEDRAL : 14.251 2229 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' REMARK 3 ORIGIN FOR THE GROUP (A): -45.1529 36.3786 0.4195 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.1849 REMARK 3 T33: 0.1534 T12: -0.0330 REMARK 3 T13: 0.0310 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.3977 L22: 1.8519 REMARK 3 L33: 1.2647 L12: -0.3384 REMARK 3 L13: -0.0701 L23: -0.2440 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.0925 S13: -0.1239 REMARK 3 S21: 0.1919 S22: -0.0555 S23: 0.1228 REMARK 3 S31: 0.0572 S32: 0.0287 S33: 0.0042 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -10.1900 25.7574 -6.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.1327 T22: 0.2234 REMARK 3 T33: 0.1842 T12: -0.0207 REMARK 3 T13: -0.0083 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 3.3816 L22: 1.3237 REMARK 3 L33: 1.4158 L12: -0.9818 REMARK 3 L13: -0.2423 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: 0.1808 S13: 0.0930 REMARK 3 S21: 0.0112 S22: -0.0879 S23: -0.0661 REMARK 3 S31: -0.0678 S32: -0.1179 S33: 0.0150 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79222 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 39.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 2.11500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1QYQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS, PH 8.5, 50MM MGCL2, 25% REMARK 280 PEG3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.54500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 67.28500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 67.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.81750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 67.28500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 67.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.27250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 67.28500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 67.28500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.81750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 67.28500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.28500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.27250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.54500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 GLY A 230 REMARK 465 MET A 231 REMARK 465 ASP A 232 REMARK 465 GLU A 233 REMARK 465 LEU A 234 REMARK 465 TYR A 235 REMARK 465 LYS A 236 REMARK 465 GLY B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 GLY B 230 REMARK 465 MET B 231 REMARK 465 ASP B 232 REMARK 465 GLU B 233 REMARK 465 LEU B 234 REMARK 465 TYR B 235 REMARK 465 LYS B 236 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 312 O HOH A 521 2.03 REMARK 500 NH2 ARG B 166 O HOH B 301 2.06 REMARK 500 O HOH B 473 O HOH B 522 2.08 REMARK 500 O HOH A 590 O HOH A 592 2.14 REMARK 500 O HOH A 336 O HOH A 521 2.18 REMARK 500 O SER A 2 O HOH A 301 2.18 REMARK 500 O HOH A 398 O HOH A 555 2.18 REMARK 500 O HOH A 319 O HOH A 518 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 314 O HOH B 314 8555 2.01 REMARK 500 O HOH B 531 O HOH B 531 8554 2.14 REMARK 500 O HOH A 529 O HOH B 411 4455 2.15 REMARK 500 O HOH A 489 O HOH B 316 8554 2.16 REMARK 500 O HOH A 502 O HOH A 520 8554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 32 CD GLU B 32 OE2 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 86 CG - SD - CE ANGL. DEV. = 10.1 DEGREES REMARK 500 ARG B 30 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 101 -157.87 -156.06 REMARK 500 ASP B 101 -153.48 -146.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 591 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 592 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A 593 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH B 554 DISTANCE = 6.00 ANGSTROMS DBREF 5WJ4 A 2 236 UNP P42212 GFP_AEQVI 2 238 DBREF 5WJ4 B 2 236 UNP P42212 GFP_AEQVI 2 238 SEQADV 5WJ4 GLY A -2 UNP P42212 EXPRESSION TAG SEQADV 5WJ4 HIS A -1 UNP P42212 EXPRESSION TAG SEQADV 5WJ4 MET A 0 UNP P42212 EXPRESSION TAG SEQADV 5WJ4 VAL A 1 UNP P42212 EXPRESSION TAG SEQADV 5WJ4 ARG A 30 UNP P42212 SER 30 ENGINEERED MUTATION SEQADV 5WJ4 ASN A 39 UNP P42212 TYR 39 ENGINEERED MUTATION SEQADV 5WJ4 CR2 A 65 UNP P42212 SER 65 CHROMOPHORE SEQADV 5WJ4 CR2 A 65 UNP P42212 TYR 66 CHROMOPHORE SEQADV 5WJ4 CR2 A 65 UNP P42212 GLY 67 CHROMOPHORE SEQADV 5WJ4 ALA A 67 UNP P42212 GLN 69 ENGINEERED MUTATION SEQADV 5WJ4 SER A 97 UNP P42212 PHE 99 ENGINEERED MUTATION SEQADV 5WJ4 THR A 103 UNP P42212 ASN 105 ENGINEERED MUTATION SEQADV 5WJ4 PHE A 143 UNP P42212 TYR 145 ENGINEERED MUTATION SEQADV 5WJ4 CYS A 145 UNP P42212 SER 147 ENGINEERED MUTATION SEQADV 5WJ4 ASP A 146 UNP P42212 HIS 148 ENGINEERED MUTATION SEQADV 5WJ4 THR A 151 UNP P42212 MET 153 ENGINEERED MUTATION SEQADV 5WJ4 ALA A 161 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 5WJ4 VAL A 169 UNP P42212 ILE 171 ENGINEERED MUTATION SEQADV 5WJ4 VAL A 201 UNP P42212 THR 203 ENGINEERED MUTATION SEQADV 5WJ4 CYS A 202 UNP P42212 GLN 204 ENGINEERED MUTATION SEQADV 5WJ4 GLN A 220 UNP P42212 GLU 222 ENGINEERED MUTATION SEQADV 5WJ4 GLY B -2 UNP P42212 EXPRESSION TAG SEQADV 5WJ4 HIS B -1 UNP P42212 EXPRESSION TAG SEQADV 5WJ4 MET B 0 UNP P42212 EXPRESSION TAG SEQADV 5WJ4 VAL B 1 UNP P42212 EXPRESSION TAG SEQADV 5WJ4 ARG B 30 UNP P42212 SER 30 ENGINEERED MUTATION SEQADV 5WJ4 ASN B 39 UNP P42212 TYR 39 ENGINEERED MUTATION SEQADV 5WJ4 CR2 B 65 UNP P42212 SER 65 CHROMOPHORE SEQADV 5WJ4 CR2 B 65 UNP P42212 TYR 66 CHROMOPHORE SEQADV 5WJ4 CR2 B 65 UNP P42212 GLY 67 CHROMOPHORE SEQADV 5WJ4 ALA B 67 UNP P42212 GLN 69 ENGINEERED MUTATION SEQADV 5WJ4 SER B 97 UNP P42212 PHE 99 ENGINEERED MUTATION SEQADV 5WJ4 THR B 103 UNP P42212 ASN 105 ENGINEERED MUTATION SEQADV 5WJ4 PHE B 143 UNP P42212 TYR 145 ENGINEERED MUTATION SEQADV 5WJ4 CYS B 145 UNP P42212 SER 147 ENGINEERED MUTATION SEQADV 5WJ4 ASP B 146 UNP P42212 HIS 148 ENGINEERED MUTATION SEQADV 5WJ4 THR B 151 UNP P42212 MET 153 ENGINEERED MUTATION SEQADV 5WJ4 ALA B 161 UNP P42212 VAL 163 ENGINEERED MUTATION SEQADV 5WJ4 VAL B 169 UNP P42212 ILE 171 ENGINEERED MUTATION SEQADV 5WJ4 VAL B 201 UNP P42212 THR 203 ENGINEERED MUTATION SEQADV 5WJ4 CYS B 202 UNP P42212 GLN 204 ENGINEERED MUTATION SEQADV 5WJ4 GLN B 220 UNP P42212 GLU 222 ENGINEERED MUTATION SEQRES 1 A 239 GLY HIS MET VAL SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 A 239 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 A 239 GLY HIS LYS PHE SER VAL ARG GLY GLU GLY GLU GLY ASP SEQRES 4 A 239 ALA THR ASN GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 A 239 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 A 239 THR PHE CR2 VAL ALA CYS PHE SER ARG TYR PRO ASP HIS SEQRES 7 A 239 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 A 239 GLY TYR VAL GLN GLU ARG THR ILE SER PHE LYS ASP ASP SEQRES 9 A 239 GLY THR TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 A 239 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 A 239 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 A 239 TYR ASN PHE ASN CYS ASP ASN VAL TYR ILE THR ALA ASP SEQRES 13 A 239 LYS GLN LYS ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG SEQRES 14 A 239 HIS ASN VAL GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 A 239 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 A 239 LEU PRO ASP ASN HIS TYR LEU SER VAL CYS SER ALA LEU SEQRES 17 A 239 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 A 239 LEU GLN PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET SEQRES 19 A 239 ASP GLU LEU TYR LYS SEQRES 1 B 239 GLY HIS MET VAL SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 B 239 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 B 239 GLY HIS LYS PHE SER VAL ARG GLY GLU GLY GLU GLY ASP SEQRES 4 B 239 ALA THR ASN GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 B 239 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 B 239 THR PHE CR2 VAL ALA CYS PHE SER ARG TYR PRO ASP HIS SEQRES 7 B 239 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 B 239 GLY TYR VAL GLN GLU ARG THR ILE SER PHE LYS ASP ASP SEQRES 9 B 239 GLY THR TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 B 239 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 B 239 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 B 239 TYR ASN PHE ASN CYS ASP ASN VAL TYR ILE THR ALA ASP SEQRES 13 B 239 LYS GLN LYS ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG SEQRES 14 B 239 HIS ASN VAL GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 B 239 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 B 239 LEU PRO ASP ASN HIS TYR LEU SER VAL CYS SER ALA LEU SEQRES 17 B 239 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 B 239 LEU GLN PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET SEQRES 19 B 239 ASP GLU LEU TYR LYS MODRES 5WJ4 CR2 A 65 GLY CHROMOPHORE MODRES 5WJ4 CR2 B 65 GLY CHROMOPHORE HET CR2 A 65 19 HET CR2 B 65 19 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) FORMUL 1 CR2 2(C13 H13 N3 O4) FORMUL 3 HOH *547(H2 O) HELIX 1 AA1 LYS A 3 THR A 9 5 7 HELIX 2 AA2 ALA A 37 ASN A 39 5 3 HELIX 3 AA3 PRO A 56 VAL A 61 5 6 HELIX 4 AA4 VAL A 66 SER A 70 5 5 HELIX 5 AA5 PRO A 73 HIS A 79 5 7 HELIX 6 AA6 ASP A 80 ALA A 85 1 6 HELIX 7 AA7 LYS A 154 ASN A 157 5 4 HELIX 8 AA8 LYS B 3 THR B 9 5 7 HELIX 9 AA9 PRO B 56 VAL B 61 5 6 HELIX 10 AB1 VAL B 66 SER B 70 5 5 HELIX 11 AB2 PRO B 73 HIS B 79 5 7 HELIX 12 AB3 ASP B 80 ALA B 85 1 6 SHEET 1 AA112 VAL A 12 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 215 ALA A 225 -1 O LEU A 218 N LEU A 44 SHEET 5 AA112 HIS A 197 SER A 206 -1 N SER A 200 O THR A 223 SHEET 6 AA112 CYS A 145 ASP A 153 -1 N ASP A 146 O VAL A 201 SHEET 7 AA112 GLY A 158 ASN A 168 -1 O GLY A 158 N ASP A 153 SHEET 8 AA112 VAL A 174 PRO A 185 -1 O HIS A 179 N PHE A 163 SHEET 9 AA112 TYR A 90 PHE A 98 -1 N VAL A 91 O THR A 184 SHEET 10 AA112 THR A 103 GLU A 113 -1 O TYR A 104 N ILE A 96 SHEET 11 AA112 THR A 116 ILE A 126 -1 O VAL A 118 N LYS A 111 SHEET 12 AA112 VAL A 12 VAL A 22 1 N GLU A 17 O ILE A 121 SHEET 1 AA212 VAL B 12 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O PHE B 27 N GLY B 20 SHEET 3 AA212 LYS B 41 CYS B 48 -1 O ILE B 47 N ARG B 30 SHEET 4 AA212 HIS B 215 ALA B 225 -1 O LEU B 218 N LEU B 44 SHEET 5 AA212 HIS B 197 SER B 206 -1 N SER B 200 O THR B 223 SHEET 6 AA212 CYS B 145 ASP B 153 -1 N ASP B 146 O VAL B 201 SHEET 7 AA212 GLY B 158 ASN B 168 -1 O GLY B 158 N ASP B 153 SHEET 8 AA212 VAL B 174 PRO B 185 -1 O GLN B 175 N HIS B 167 SHEET 9 AA212 TYR B 90 PHE B 98 -1 N VAL B 91 O THR B 184 SHEET 10 AA212 THR B 103 GLU B 113 -1 O TYR B 104 N ILE B 96 SHEET 11 AA212 THR B 116 ILE B 126 -1 O VAL B 118 N LYS B 111 SHEET 12 AA212 VAL B 12 VAL B 22 1 N ASP B 21 O GLY B 125 SSBOND 1 CYS A 145 CYS A 202 1555 1555 2.11 SSBOND 2 CYS B 145 CYS B 202 1555 1555 2.09 LINK C PHE A 64 N1 CR2 A 65 1555 1555 1.40 LINK C3 CR2 A 65 N VAL A 66 1555 1555 1.41 LINK C PHE B 64 N1 CR2 B 65 1555 1555 1.36 LINK C3 CR2 B 65 N VAL B 66 1555 1555 1.47 CISPEP 1 MET A 86 PRO A 87 0 6.42 CISPEP 2 MET B 86 PRO B 87 0 5.13 CRYST1 134.570 134.570 69.090 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007431 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007431 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014474 0.00000