HEADER VIRAL PROTEIN 25-JUL-17 5WKN TITLE CRYSTAL STRUCTURE OF THE PARAINFLUENZA VIRUS 5 NUCLEOPROTEIN- TITLE 2 PHOSPHOPROTEIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 32-372; COMPND 5 SYNONYM: NUCLEOCAPSID PROTEIN,PROTEIN N; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PHOSPHOPROTEIN; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 2-50; COMPND 11 SYNONYM: PROTEIN P; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAINFLUENZA VIRUS 5 (STRAIN W3); SOURCE 3 ORGANISM_COMMON: PIV5; SOURCE 4 ORGANISM_TAXID: 11208; SOURCE 5 STRAIN: W3; SOURCE 6 GENE: NP, N; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: PARAINFLUENZA VIRUS 5 (STRAIN W3); SOURCE 12 ORGANISM_COMMON: PIV5; SOURCE 13 ORGANISM_TAXID: 11208; SOURCE 14 STRAIN: W3; SOURCE 15 GENE: P/V; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS PARAMYXOVIRUS, NUCLEOPROTEIN, PHOSPHOPROTEIN, CONFORMATIONAL CHANGES, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.AGGARWAL,G.P.LESER,C.A.KORS,R.A.LAMB REVDAT 5 04-OCT-23 5WKN 1 REMARK REVDAT 4 20-NOV-19 5WKN 1 REMARK REVDAT 3 21-FEB-18 5WKN 1 JRNL REVDAT 2 27-DEC-17 5WKN 1 JRNL REVDAT 1 13-DEC-17 5WKN 0 JRNL AUTH M.AGGARWAL,G.P.LESER,C.A.KORS,R.A.LAMB JRNL TITL STRUCTURE OF THE PARAMYXOVIRUS PARAINFLUENZA VIRUS 5 JRNL TITL 2 NUCLEOPROTEIN IN COMPLEX WITH AN AMINO-TERMINAL PEPTIDE OF JRNL TITL 3 THE PHOSPHOPROTEIN. JRNL REF J. VIROL. V. 92 2018 JRNL REFN ESSN 1098-5514 JRNL PMID 29237836 JRNL DOI 10.1128/JVI.01304-17 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1800 - 5.7111 0.98 2897 160 0.2406 0.2245 REMARK 3 2 5.7111 - 4.5352 1.00 2808 144 0.2394 0.3089 REMARK 3 3 4.5352 - 3.9626 1.00 2786 158 0.2176 0.2663 REMARK 3 4 3.9626 - 3.6006 1.00 2745 156 0.2462 0.2870 REMARK 3 5 3.6006 - 3.3426 1.00 2750 147 0.2642 0.3196 REMARK 3 6 3.3426 - 3.1457 1.00 2750 140 0.2695 0.3335 REMARK 3 7 3.1457 - 2.9882 1.00 2739 145 0.2977 0.3987 REMARK 3 8 2.9882 - 2.8581 1.00 2737 143 0.2965 0.3443 REMARK 3 9 2.8581 - 2.7481 1.00 2747 120 0.3105 0.3399 REMARK 3 10 2.7481 - 2.6533 0.99 2685 150 0.3327 0.4310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5613 REMARK 3 ANGLE : 0.742 7578 REMARK 3 CHIRALITY : 0.044 844 REMARK 3 PLANARITY : 0.005 967 REMARK 3 DIHEDRAL : 5.553 3384 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228255. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29196 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: 4CO6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2, 0.1 M HEPES SODIUM PH 7.0 REMARK 280 AND 24 % (V/V) PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.53150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.48850 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.53150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.48850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 HIS A 28 REMARK 465 MET A 29 REMARK 465 ALA A 30 REMARK 465 SER A 31 REMARK 465 LYS A 32 REMARK 465 SER A 94 REMARK 465 PRO A 95 REMARK 465 GLU A 96 REMARK 465 ALA A 97 REMARK 465 ASP A 98 REMARK 465 ILE A 99 REMARK 465 GLU A 100 REMARK 465 CYS A 181 REMARK 465 MET A 182 REMARK 465 THR A 183 REMARK 465 ALA A 184 REMARK 465 PRO A 185 REMARK 465 ASP A 186 REMARK 465 GLN A 187 REMARK 465 PRO A 188 REMARK 465 ALA A 189 REMARK 465 ALA A 190 REMARK 465 SER A 191 REMARK 465 ASP C 2 REMARK 465 PRO C 3 REMARK 465 THR C 4 REMARK 465 ASP C 5 REMARK 465 LEU C 6 REMARK 465 TYR C 26 REMARK 465 PHE C 27 REMARK 465 THR C 28 REMARK 465 SER C 29 REMARK 465 GLN C 30 REMARK 465 GLN C 31 REMARK 465 VAL C 32 REMARK 465 THR C 33 REMARK 465 GLY C 34 REMARK 465 THR C 35 REMARK 465 SER C 36 REMARK 465 SER C 37 REMARK 465 LEU C 38 REMARK 465 GLY C 39 REMARK 465 LYS C 40 REMARK 465 ASN C 41 REMARK 465 THR C 42 REMARK 465 ILE C 43 REMARK 465 PRO C 44 REMARK 465 PRO C 45 REMARK 465 GLY C 46 REMARK 465 VAL C 47 REMARK 465 THR C 48 REMARK 465 GLY C 49 REMARK 465 LEU C 50 REMARK 465 GLY B 26 REMARK 465 SER B 27 REMARK 465 HIS B 28 REMARK 465 MET B 29 REMARK 465 ALA B 30 REMARK 465 SER B 31 REMARK 465 LYS B 32 REMARK 465 CYS B 181 REMARK 465 MET B 182 REMARK 465 THR B 183 REMARK 465 ALA B 184 REMARK 465 PRO B 185 REMARK 465 ASP B 186 REMARK 465 GLN B 187 REMARK 465 PRO B 188 REMARK 465 ALA B 189 REMARK 465 ALA B 190 REMARK 465 SER B 191 REMARK 465 ILE B 192 REMARK 465 MET B 373 REMARK 465 ASP D 2 REMARK 465 PRO D 3 REMARK 465 THR D 4 REMARK 465 ASP D 5 REMARK 465 GLU D 25 REMARK 465 TYR D 26 REMARK 465 PHE D 27 REMARK 465 THR D 28 REMARK 465 SER D 29 REMARK 465 GLN D 30 REMARK 465 GLN D 31 REMARK 465 VAL D 32 REMARK 465 THR D 33 REMARK 465 GLY D 34 REMARK 465 THR D 35 REMARK 465 SER D 36 REMARK 465 SER D 37 REMARK 465 LEU D 38 REMARK 465 GLY D 39 REMARK 465 LYS D 40 REMARK 465 ASN D 41 REMARK 465 THR D 42 REMARK 465 ILE D 43 REMARK 465 PRO D 44 REMARK 465 PRO D 45 REMARK 465 GLY D 46 REMARK 465 VAL D 47 REMARK 465 THR D 48 REMARK 465 GLY D 49 REMARK 465 LEU D 50 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 109 OG SER A 120 2.08 REMARK 500 O THR A 140 O HOH A 401 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR B 140 O HOH A 401 1455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 -50.34 -21.08 REMARK 500 LEU A 90 -48.00 28.35 REMARK 500 ALA A 91 157.93 -47.18 REMARK 500 ASP A 92 -151.52 -124.79 REMARK 500 SER A 111 130.39 -35.50 REMARK 500 LEU A 114 -68.86 -150.16 REMARK 500 MET A 122 -159.69 -145.20 REMARK 500 ASP A 136 52.69 -108.33 REMARK 500 GLU A 193 -72.86 -38.09 REMARK 500 GLN A 243 155.22 68.60 REMARK 500 SER A 247 73.93 53.98 REMARK 500 TYR A 329 56.61 -147.10 REMARK 500 PRO C 10 39.97 -73.48 REMARK 500 LYS C 15 75.56 -68.56 REMARK 500 VAL C 24 45.58 -101.69 REMARK 500 ILE B 99 -8.49 64.23 REMARK 500 GLU B 100 -159.71 54.13 REMARK 500 PHE B 112 43.67 -84.20 REMARK 500 ASP B 136 63.17 -101.79 REMARK 500 LYS B 194 79.43 -107.21 REMARK 500 GLN B 202 -132.92 -101.76 REMARK 500 LEU B 277 -10.79 -147.63 REMARK 500 TYR B 329 60.68 -151.60 REMARK 500 ALA B 351 93.43 -67.32 REMARK 500 SER B 353 74.76 53.19 REMARK 500 LYS B 359 -15.32 69.03 REMARK 500 PRO D 10 -149.67 -60.34 REMARK 500 GLU D 12 69.27 -68.68 REMARK 500 ASN D 14 40.48 -59.04 REMARK 500 LEU D 21 37.38 -94.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 122 SER A 123 -148.24 REMARK 500 SER B 94 PRO B 95 146.97 REMARK 500 ARG B 204 ILE B 205 136.78 REMARK 500 GLN B 243 SER B 244 147.57 REMARK 500 REMARK 500 REMARK: NULL DBREF 5WKN A 32 372 UNP Q88435 NCAP_PIV5 32 372 DBREF 5WKN C 2 50 UNP P11208 PHOSP_PIV5 2 50 DBREF 5WKN B 32 372 UNP Q88435 NCAP_PIV5 32 372 DBREF 5WKN D 2 50 UNP P11208 PHOSP_PIV5 2 50 SEQADV 5WKN GLY A 26 UNP Q88435 EXPRESSION TAG SEQADV 5WKN SER A 27 UNP Q88435 EXPRESSION TAG SEQADV 5WKN HIS A 28 UNP Q88435 EXPRESSION TAG SEQADV 5WKN MET A 29 UNP Q88435 EXPRESSION TAG SEQADV 5WKN ALA A 30 UNP Q88435 EXPRESSION TAG SEQADV 5WKN SER A 31 UNP Q88435 EXPRESSION TAG SEQADV 5WKN MET A 373 UNP Q88435 EXPRESSION TAG SEQADV 5WKN GLY B 26 UNP Q88435 EXPRESSION TAG SEQADV 5WKN SER B 27 UNP Q88435 EXPRESSION TAG SEQADV 5WKN HIS B 28 UNP Q88435 EXPRESSION TAG SEQADV 5WKN MET B 29 UNP Q88435 EXPRESSION TAG SEQADV 5WKN ALA B 30 UNP Q88435 EXPRESSION TAG SEQADV 5WKN SER B 31 UNP Q88435 EXPRESSION TAG SEQADV 5WKN MET B 373 UNP Q88435 EXPRESSION TAG SEQRES 1 A 348 GLY SER HIS MET ALA SER LYS PRO VAL ILE ARG VAL PHE SEQRES 2 A 348 ILE LEU THR SER ASN ASN PRO GLU LEU ARG SER ARG LEU SEQRES 3 A 348 LEU LEU PHE CYS LEU ARG ILE VAL LEU SER ASN GLY ALA SEQRES 4 A 348 ARG ASP SER HIS ARG PHE GLY ALA LEU LEU THR MET PHE SEQRES 5 A 348 SER LEU PRO SER ALA THR MET LEU ASN HIS VAL LYS LEU SEQRES 6 A 348 ALA ASP GLN SER PRO GLU ALA ASP ILE GLU ARG VAL GLU SEQRES 7 A 348 ILE ASP GLY PHE GLU GLU GLY SER PHE ARG LEU ILE PRO SEQRES 8 A 348 ASN ALA ARG SER GLY MET SER ARG GLY GLU ILE ASN ALA SEQRES 9 A 348 TYR ALA ALA LEU ALA GLU ASP LEU PRO ASP THR LEU ASN SEQRES 10 A 348 HIS ALA THR PRO PHE VAL ASP SER GLU VAL GLU GLY THR SEQRES 11 A 348 ALA TRP ASP GLU ILE GLU THR PHE LEU ASP MET CYS TYR SEQRES 12 A 348 SER VAL LEU MET GLN ALA TRP ILE VAL THR CYS LYS CYS SEQRES 13 A 348 MET THR ALA PRO ASP GLN PRO ALA ALA SER ILE GLU LYS SEQRES 14 A 348 ARG LEU GLN LYS TYR ARG GLN GLN GLY ARG ILE ASN PRO SEQRES 15 A 348 ARG TYR LEU LEU GLN PRO GLU ALA ARG ARG ILE ILE GLN SEQRES 16 A 348 ASN VAL ILE ARG LYS GLY MET VAL VAL ARG HIS PHE LEU SEQRES 17 A 348 THR PHE GLU LEU GLN LEU ALA ARG ALA GLN SER LEU VAL SEQRES 18 A 348 SER ASN ARG TYR TYR ALA MET VAL GLY ASP VAL GLY LYS SEQRES 19 A 348 TYR ILE GLU ASN CYS GLY MET GLY GLY PHE PHE LEU THR SEQRES 20 A 348 LEU LYS TYR ALA LEU GLY THR ARG TRP PRO THR LEU ALA SEQRES 21 A 348 LEU ALA ALA PHE SER GLY GLU LEU THR LYS LEU LYS SER SEQRES 22 A 348 LEU MET ALA LEU TYR GLN THR LEU GLY GLU GLN ALA ARG SEQRES 23 A 348 TYR LEU ALA LEU LEU GLU SER PRO HIS LEU MET ASP PHE SEQRES 24 A 348 ALA ALA ALA ASN TYR PRO LEU LEU TYR SER TYR ALA MET SEQRES 25 A 348 GLY ILE GLY TYR VAL LEU ASP VAL ASN MET ARG ASN TYR SEQRES 26 A 348 ALA PHE SER ARG SER TYR MET ASN LYS THR TYR PHE GLN SEQRES 27 A 348 LEU GLY MET GLU THR ALA ARG LYS GLN MET SEQRES 1 C 49 ASP PRO THR ASP LEU SER PHE SER PRO ASP GLU ILE ASN SEQRES 2 C 49 LYS LEU ILE GLU THR GLY LEU ASN THR VAL GLU TYR PHE SEQRES 3 C 49 THR SER GLN GLN VAL THR GLY THR SER SER LEU GLY LYS SEQRES 4 C 49 ASN THR ILE PRO PRO GLY VAL THR GLY LEU SEQRES 1 B 348 GLY SER HIS MET ALA SER LYS PRO VAL ILE ARG VAL PHE SEQRES 2 B 348 ILE LEU THR SER ASN ASN PRO GLU LEU ARG SER ARG LEU SEQRES 3 B 348 LEU LEU PHE CYS LEU ARG ILE VAL LEU SER ASN GLY ALA SEQRES 4 B 348 ARG ASP SER HIS ARG PHE GLY ALA LEU LEU THR MET PHE SEQRES 5 B 348 SER LEU PRO SER ALA THR MET LEU ASN HIS VAL LYS LEU SEQRES 6 B 348 ALA ASP GLN SER PRO GLU ALA ASP ILE GLU ARG VAL GLU SEQRES 7 B 348 ILE ASP GLY PHE GLU GLU GLY SER PHE ARG LEU ILE PRO SEQRES 8 B 348 ASN ALA ARG SER GLY MET SER ARG GLY GLU ILE ASN ALA SEQRES 9 B 348 TYR ALA ALA LEU ALA GLU ASP LEU PRO ASP THR LEU ASN SEQRES 10 B 348 HIS ALA THR PRO PHE VAL ASP SER GLU VAL GLU GLY THR SEQRES 11 B 348 ALA TRP ASP GLU ILE GLU THR PHE LEU ASP MET CYS TYR SEQRES 12 B 348 SER VAL LEU MET GLN ALA TRP ILE VAL THR CYS LYS CYS SEQRES 13 B 348 MET THR ALA PRO ASP GLN PRO ALA ALA SER ILE GLU LYS SEQRES 14 B 348 ARG LEU GLN LYS TYR ARG GLN GLN GLY ARG ILE ASN PRO SEQRES 15 B 348 ARG TYR LEU LEU GLN PRO GLU ALA ARG ARG ILE ILE GLN SEQRES 16 B 348 ASN VAL ILE ARG LYS GLY MET VAL VAL ARG HIS PHE LEU SEQRES 17 B 348 THR PHE GLU LEU GLN LEU ALA ARG ALA GLN SER LEU VAL SEQRES 18 B 348 SER ASN ARG TYR TYR ALA MET VAL GLY ASP VAL GLY LYS SEQRES 19 B 348 TYR ILE GLU ASN CYS GLY MET GLY GLY PHE PHE LEU THR SEQRES 20 B 348 LEU LYS TYR ALA LEU GLY THR ARG TRP PRO THR LEU ALA SEQRES 21 B 348 LEU ALA ALA PHE SER GLY GLU LEU THR LYS LEU LYS SER SEQRES 22 B 348 LEU MET ALA LEU TYR GLN THR LEU GLY GLU GLN ALA ARG SEQRES 23 B 348 TYR LEU ALA LEU LEU GLU SER PRO HIS LEU MET ASP PHE SEQRES 24 B 348 ALA ALA ALA ASN TYR PRO LEU LEU TYR SER TYR ALA MET SEQRES 25 B 348 GLY ILE GLY TYR VAL LEU ASP VAL ASN MET ARG ASN TYR SEQRES 26 B 348 ALA PHE SER ARG SER TYR MET ASN LYS THR TYR PHE GLN SEQRES 27 B 348 LEU GLY MET GLU THR ALA ARG LYS GLN MET SEQRES 1 D 49 ASP PRO THR ASP LEU SER PHE SER PRO ASP GLU ILE ASN SEQRES 2 D 49 LYS LEU ILE GLU THR GLY LEU ASN THR VAL GLU TYR PHE SEQRES 3 D 49 THR SER GLN GLN VAL THR GLY THR SER SER LEU GLY LYS SEQRES 4 D 49 ASN THR ILE PRO PRO GLY VAL THR GLY LEU FORMUL 5 HOH *35(H2 O) HELIX 1 AA1 ASN A 44 SER A 61 1 18 HELIX 2 AA2 ARG A 65 LEU A 79 1 15 HELIX 3 AA3 SER A 81 LYS A 89 1 9 HELIX 4 AA4 SER A 123 GLU A 135 1 13 HELIX 5 AA5 LEU A 141 THR A 145 5 5 HELIX 6 AA6 GLU A 159 VAL A 177 1 19 HELIX 7 AA7 LYS A 194 GLN A 202 1 9 HELIX 8 AA8 ASN A 206 LEU A 210 5 5 HELIX 9 AA9 GLN A 212 GLY A 226 1 15 HELIX 10 AB1 GLY A 226 ARG A 241 1 16 HELIX 11 AB2 ASN A 248 GLU A 262 1 15 HELIX 12 AB3 MET A 266 ALA A 276 1 11 HELIX 13 AB4 TRP A 281 ALA A 288 5 8 HELIX 14 AB5 PHE A 289 GLY A 307 1 19 HELIX 15 AB6 GLU A 308 LEU A 313 5 6 HELIX 16 AB7 HIS A 320 ASN A 328 5 9 HELIX 17 AB8 TYR A 329 ASP A 344 1 16 HELIX 18 AB9 VAL A 345 ARG A 348 5 4 HELIX 19 AC1 ASN A 358 LYS A 371 1 14 HELIX 20 AC2 LEU C 16 VAL C 24 1 9 HELIX 21 AC3 ASN B 44 SER B 61 1 18 HELIX 22 AC4 ARG B 65 LEU B 79 1 15 HELIX 23 AC5 SER B 81 VAL B 88 1 8 HELIX 24 AC6 SER B 123 ALA B 134 1 12 HELIX 25 AC7 LEU B 141 THR B 145 5 5 HELIX 26 AC8 GLU B 159 CYS B 179 1 21 HELIX 27 AC9 LYS B 194 GLN B 202 1 9 HELIX 28 AD1 ASN B 206 LEU B 210 5 5 HELIX 29 AD2 GLN B 212 GLY B 226 1 15 HELIX 30 AD3 GLY B 226 ALA B 242 1 17 HELIX 31 AD4 ASN B 248 GLU B 262 1 15 HELIX 32 AD5 MET B 266 ALA B 276 1 11 HELIX 33 AD6 TRP B 281 ALA B 288 5 8 HELIX 34 AD7 PHE B 289 GLY B 307 1 19 HELIX 35 AD8 GLU B 308 LEU B 313 5 6 HELIX 36 AD9 SER B 318 ASN B 328 5 11 HELIX 37 AE1 TYR B 329 ASP B 344 1 16 HELIX 38 AE2 THR B 360 LYS B 371 1 12 SHEET 1 AA1 2 ILE A 35 ARG A 36 0 SHEET 2 AA1 2 VAL A 102 GLU A 103 1 O GLU A 103 N ILE A 35 SHEET 1 AA2 2 ILE B 35 ARG B 36 0 SHEET 2 AA2 2 GLU B 96 ALA B 97 1 O ALA B 97 N ILE B 35 SHEET 1 AA3 3 ILE B 39 LEU B 40 0 SHEET 2 AA3 3 ARG B 101 ASP B 105 1 O VAL B 102 N ILE B 39 SHEET 3 AA3 3 LEU B 114 PRO B 116 -1 O ILE B 115 N GLU B 103 CISPEP 1 ALA A 91 ASP A 92 0 14.20 CISPEP 2 GLU A 109 GLY A 110 0 -0.38 CISPEP 3 ARG A 348 ASN A 349 0 4.62 CRYST1 79.087 81.063 152.977 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012336 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006537 0.00000