HEADER VIRAL PROTEIN/INHIBITOR 25-JUL-17 5WL0 TITLE CO-CRYSTAL STRUCTURE OF INFLUENZA A H3N2 PB2 (241-741) BOUND TO VX-787 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 241-741; COMPND 5 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN A/UDORN/307/1972 SOURCE 3 H3N2); SOURCE 4 ORGANISM_TAXID: 381517; SOURCE 5 STRAIN: A/UDORN/307/1972 H3N2; SOURCE 6 GENE: PB2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRCHIS2B KEYWDS POLYMERASE BASIC PROTEIN 2, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.MA,S.SHIA REVDAT 2 04-OCT-23 5WL0 1 HETSYN REVDAT 1 06-SEP-17 5WL0 0 JRNL AUTH X.MA,L.XIE,C.WARTCHOW,R.WARNE,Y.XU,A.RIVKIN,D.TULLY,S.SHIA, JRNL AUTH 2 K.UEHARA,D.M.BALDWIN,G.MUIRU,W.ZHONG,I.ZAROR,D.E.BUSSIERE, JRNL AUTH 3 V.H.J.LEONARD JRNL TITL STRUCTURAL BASIS FOR THERAPEUTIC INHIBITION OF INFLUENZA A JRNL TITL 2 POLYMERASE PB2 SUBUNIT. JRNL REF SCI REP V. 7 9385 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28839261 JRNL DOI 10.1038/S41598-017-09538-X REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 23874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0067 - 4.7981 0.96 2809 162 0.1771 0.2019 REMARK 3 2 4.7981 - 3.8092 0.97 2796 151 0.1672 0.2073 REMARK 3 3 3.8092 - 3.3279 0.99 2855 138 0.1923 0.2534 REMARK 3 4 3.3279 - 3.0237 1.00 2878 135 0.2215 0.3323 REMARK 3 5 3.0237 - 2.8070 1.00 2886 129 0.2523 0.3096 REMARK 3 6 2.8070 - 2.6415 1.00 2792 149 0.2545 0.3314 REMARK 3 7 2.6415 - 2.5093 1.00 2878 151 0.2746 0.3493 REMARK 3 8 2.5093 - 2.4000 1.00 2816 149 0.2945 0.3504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3885 REMARK 3 ANGLE : 1.170 5237 REMARK 3 CHIRALITY : 0.063 599 REMARK 3 PLANARITY : 0.007 697 REMARK 3 DIHEDRAL : 17.839 2398 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -16.2107 27.8718 16.5666 REMARK 3 T TENSOR REMARK 3 T11: 0.1744 T22: 0.1694 REMARK 3 T33: 0.1899 T12: -0.0237 REMARK 3 T13: -0.0272 T23: 0.0636 REMARK 3 L TENSOR REMARK 3 L11: 0.5065 L22: 0.4418 REMARK 3 L33: 0.7216 L12: 0.7520 REMARK 3 L13: 0.3644 L23: 0.6532 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: 0.0242 S13: -0.0632 REMARK 3 S21: 0.0606 S22: -0.1168 S23: 0.0183 REMARK 3 S31: 0.0418 S32: 0.0846 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.77 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24138 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2JDQ & 2VQZ REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, PH 5.77, 13.18% PEG20000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.20650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.37600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.20650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.37600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NH1 ARG A 664 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 240 REMARK 465 GLU A 241 REMARK 465 GLN A 242 REMARK 465 MET A 243 REMARK 465 TYR A 244 REMARK 465 THR A 245 REMARK 465 PRO A 246 REMARK 465 GLY A 247 REMARK 465 GLY A 248 REMARK 465 GLU A 249 REMARK 465 VAL A 250 REMARK 465 ARG A 251 REMARK 465 ASP A 486 REMARK 465 GLU A 487 REMARK 465 TYR A 488 REMARK 465 SER A 489 REMARK 465 LYS A 738 REMARK 465 ARG A 739 REMARK 465 ASP A 740 REMARK 465 SER A 741 REMARK 465 VAL A 742 REMARK 465 ASP A 743 REMARK 465 HIS A 744 REMARK 465 HIS A 745 REMARK 465 HIS A 746 REMARK 465 HIS A 747 REMARK 465 HIS A 748 REMARK 465 HIS A 749 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 521 O HOH A 901 2.03 REMARK 500 OE1 GLN A 288 N GLY A 291 2.09 REMARK 500 ND2 ASN A 348 OD1 ASP A 417 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ ARG A 664 NH1 ARG A 664 2556 1.33 REMARK 500 NE ARG A 664 NH1 ARG A 664 2556 2.14 REMARK 500 O HOH A 906 O HOH A 943 1545 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 679 CD PRO A 679 N -0.237 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 664 NH1 - CZ - NH2 ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 664 NE - CZ - NH1 ANGL. DEV. = -13.3 DEGREES REMARK 500 PRO A 679 N - CD - CG ANGL. DEV. = 11.6 DEGREES REMARK 500 LYS A 721 CD - CE - NZ ANGL. DEV. = -14.8 DEGREES REMARK 500 LEU A 733 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 419 47.82 -141.11 REMARK 500 ALA A 424 22.50 -79.31 REMARK 500 ASN A 425 28.89 46.69 REMARK 500 ASP A 499 -159.11 -86.84 REMARK 500 GLN A 566 -19.10 -145.93 REMARK 500 ASN A 567 59.29 -143.67 REMARK 500 PRO A 679 -32.68 -39.52 REMARK 500 GLU A 712 42.57 -102.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 945 DISTANCE = 6.09 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 21G A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 802 DBREF 5WL0 A 241 741 UNP Q67296 PB2_I72A2 241 741 SEQADV 5WL0 MET A 240 UNP Q67296 INITIATING METHIONINE SEQADV 5WL0 ILE A 255 UNP Q67296 VAL 255 CONFLICT SEQADV 5WL0 SER A 271 UNP Q67296 ALA 271 CONFLICT SEQADV 5WL0 GLN A 288 UNP Q67296 LEU 288 CONFLICT SEQADV 5WL0 HIS A 522 UNP Q67296 GLN 522 CONFLICT SEQADV 5WL0 VAL A 742 UNP Q67296 EXPRESSION TAG SEQADV 5WL0 ASP A 743 UNP Q67296 EXPRESSION TAG SEQADV 5WL0 HIS A 744 UNP Q67296 EXPRESSION TAG SEQADV 5WL0 HIS A 745 UNP Q67296 EXPRESSION TAG SEQADV 5WL0 HIS A 746 UNP Q67296 EXPRESSION TAG SEQADV 5WL0 HIS A 747 UNP Q67296 EXPRESSION TAG SEQADV 5WL0 HIS A 748 UNP Q67296 EXPRESSION TAG SEQADV 5WL0 HIS A 749 UNP Q67296 EXPRESSION TAG SEQRES 1 A 510 MET GLU GLN MET TYR THR PRO GLY GLY GLU VAL ARG ASN SEQRES 2 A 510 ASP ASP ILE ASP GLN SER LEU ILE ILE ALA ALA ARG ASN SEQRES 3 A 510 ILE VAL ARG ARG ALA SER VAL SER ALA ASP PRO LEU ALA SEQRES 4 A 510 SER LEU LEU GLU MET CYS HIS SER THR GLN ILE GLY GLY SEQRES 5 A 510 THR ARG MET VAL ASP ILE LEU ARG GLN ASN PRO THR GLU SEQRES 6 A 510 GLU GLN ALA VAL ASP ILE CYS LYS ALA ALA MET GLY LEU SEQRES 7 A 510 ARG ILE SER SER SER PHE SER PHE GLY GLY PHE THR PHE SEQRES 8 A 510 LYS ARG THR SER GLY SER SER ILE LYS ARG GLU GLU GLU SEQRES 9 A 510 VAL LEU THR GLY ASN LEU GLN THR LEU LYS ILE ARG VAL SEQRES 10 A 510 HIS GLU GLY TYR GLU GLU PHE THR MET VAL GLY LYS ARG SEQRES 11 A 510 ALA THR ALA ILE LEU ARG LYS ALA THR ARG ARG LEU VAL SEQRES 12 A 510 GLN LEU ILE VAL SER GLY ARG ASP GLU GLN SER ILE ALA SEQRES 13 A 510 GLU ALA ILE ILE VAL ALA MET VAL PHE SER GLN GLU ASP SEQRES 14 A 510 CYS MET ILE LYS ALA VAL ARG GLY ASP LEU ASN PHE VAL SEQRES 15 A 510 ASN ARG ALA ASN GLN ARG LEU ASN PRO MET HIS GLN LEU SEQRES 16 A 510 LEU ARG HIS PHE GLN LYS ASP ALA LYS VAL LEU PHE GLN SEQRES 17 A 510 ASN TRP GLY ILE GLU HIS ILE ASP ASN VAL MET GLY MET SEQRES 18 A 510 VAL GLY VAL LEU PRO ASP MET THR PRO SER THR GLU MET SEQRES 19 A 510 SER MET ARG GLY ILE ARG VAL SER LYS MET GLY VAL ASP SEQRES 20 A 510 GLU TYR SER SER THR GLU ARG VAL VAL VAL SER ILE ASP SEQRES 21 A 510 ARG PHE LEU ARG VAL ARG ASP GLN ARG GLY ASN VAL LEU SEQRES 22 A 510 LEU SER PRO GLU GLU VAL SER GLU THR HIS GLY THR GLU SEQRES 23 A 510 ARG LEU THR ILE THR TYR SER SER SER MET MET TRP GLU SEQRES 24 A 510 ILE ASN GLY PRO GLU SER VAL LEU VAL ASN THR TYR GLN SEQRES 25 A 510 TRP ILE ILE ARG ASN TRP GLU THR VAL LYS ILE GLN TRP SEQRES 26 A 510 SER GLN ASN PRO THR MET LEU TYR ASN LYS MET GLU PHE SEQRES 27 A 510 GLU PRO PHE GLN SER LEU VAL PRO LYS ALA ILE ARG GLY SEQRES 28 A 510 GLN TYR SER GLY PHE VAL ARG THR LEU PHE GLN GLN MET SEQRES 29 A 510 ARG ASP VAL LEU GLY THR PHE ASP THR THR GLN ILE ILE SEQRES 30 A 510 LYS LEU LEU PRO PHE ALA ALA ALA PRO PRO LYS GLN SER SEQRES 31 A 510 ARG MET GLN PHE SER SER LEU THR VAL ASN VAL ARG GLY SEQRES 32 A 510 SER GLY MET ARG ILE LEU VAL ARG GLY ASN SER PRO VAL SEQRES 33 A 510 PHE ASN TYR ASN LYS THR THR LYS ARG LEU THR ILE LEU SEQRES 34 A 510 GLY LYS ASP ALA GLY THR LEU ILE GLU ASP PRO ASP GLU SEQRES 35 A 510 SER THR SER GLY VAL GLU SER ALA VAL LEU ARG GLY PHE SEQRES 36 A 510 LEU ILE LEU GLY LYS GLU ASP ARG ARG TYR GLY PRO ALA SEQRES 37 A 510 LEU SER ILE ASN GLU LEU SER ASN LEU ALA LYS GLY GLU SEQRES 38 A 510 LYS ALA ASN VAL LEU ILE GLY GLN GLY ASP VAL VAL LEU SEQRES 39 A 510 VAL MET LYS ARG LYS ARG ASP SER VAL ASP HIS HIS HIS SEQRES 40 A 510 HIS HIS HIS HET 21G A 801 29 HET PEG A 802 7 HETNAM 21G (2S,3S)-3-[[5-FLUORANYL-2-(5-FLUORANYL-1H-PYRROLO[2,3- HETNAM 2 21G B]PYRIDIN-3-YL)PYRIMIDIN-4- HETNAM 3 21G YL]AMINO]BICYCLO[2.2.2]OCTANE-2-CARBOXYLIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN 21G 3-[[5-FLUORO-2-(5-FLUORO-1H-PYRROLO[2,3-B]PYRIDIN-3- HETSYN 2 21G YL)PYRIMIDIN-4-YL]AMINO]BICYCLO[2.2.2]OCTANE-2- HETSYN 3 21G CARBOXYLIC ACID; VX787; (2S,3S)-3-((5-FLUORO-2-(5- HETSYN 4 21G FLUORO-1H-PYRROLO[2,3-B]PYRIDIN-3-YL)PYRIMIDIN-4-YL) HETSYN 5 21G AMINO)BICYCLO[2.2.2]OCTANE-2-CARBOXYLIC ACID FORMUL 2 21G C20 H19 F2 N5 O2 FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *45(H2 O) HELIX 1 AA1 ASN A 252 SER A 273 1 22 HELIX 2 AA2 ASP A 275 THR A 287 1 13 HELIX 3 AA3 MET A 294 ASN A 301 1 8 HELIX 4 AA4 GLU A 305 MET A 315 1 11 HELIX 5 AA5 ASP A 390 GLN A 406 1 17 HELIX 6 AA6 GLU A 407 ALA A 413 1 7 HELIX 7 AA7 ASN A 429 ASP A 441 1 13 HELIX 8 AA8 ALA A 442 ASN A 448 1 7 HELIX 9 AA9 SER A 514 VAL A 518 5 5 HELIX 10 AB1 SER A 533 ILE A 539 5 7 HELIX 11 AB2 ASN A 540 ASN A 556 1 17 HELIX 12 AB3 ASN A 556 ASN A 567 1 12 HELIX 13 AB4 ASN A 567 ASN A 573 1 7 HELIX 14 AB5 LYS A 574 GLU A 576 5 3 HELIX 15 AB6 PHE A 577 LEU A 583 1 7 HELIX 16 AB7 ILE A 588 VAL A 606 1 19 HELIX 17 AB8 ASP A 611 LEU A 619 1 9 HELIX 18 AB9 PRO A 620 ALA A 623 5 4 HELIX 19 AC1 ASP A 701 GLY A 705 5 5 HELIX 20 AC2 SER A 709 LEU A 713 5 5 SHEET 1 AA1 3 THR A 292 ARG A 293 0 SHEET 2 AA1 3 GLN A 288 ILE A 289 -1 N ILE A 289 O THR A 292 SHEET 3 AA1 3 ILE A 529 THR A 530 -1 O THR A 530 N GLN A 288 SHEET 1 AA2 2 ILE A 319 SER A 320 0 SHEET 2 AA2 2 ARG A 493 VAL A 494 -1 O VAL A 494 N ILE A 319 SHEET 1 AA3 8 PHE A 323 PHE A 325 0 SHEET 2 AA3 8 PHE A 328 GLY A 335 -1 O PHE A 330 N PHE A 323 SHEET 3 AA3 8 GLU A 361 VAL A 366 -1 O GLU A 362 N THR A 333 SHEET 4 AA3 8 ALA A 370 ALA A 377 -1 O LEU A 374 N PHE A 363 SHEET 5 AA3 8 ARG A 380 GLY A 388 -1 O ARG A 380 N ALA A 377 SHEET 6 AA3 8 ILE A 478 SER A 481 1 O ARG A 479 N LEU A 384 SHEET 7 AA3 8 MET A 460 VAL A 463 -1 N VAL A 461 O VAL A 480 SHEET 8 AA3 8 PRO A 469 SER A 470 -1 O SER A 470 N GLY A 462 SHEET 1 AA4 2 ILE A 338 LEU A 345 0 SHEET 2 AA4 2 THR A 351 GLU A 358 -1 O ILE A 354 N GLU A 342 SHEET 1 AA5 2 ILE A 451 HIS A 453 0 SHEET 2 AA5 2 MET A 473 MET A 475 -1 O SER A 474 N GLU A 452 SHEET 1 AA6 3 SER A 497 ILE A 498 0 SHEET 2 AA6 3 VAL A 504 ARG A 505 -1 O ARG A 505 N SER A 497 SHEET 3 AA6 3 VAL A 511 LEU A 513 -1 O LEU A 513 N VAL A 504 SHEET 1 AA7 2 SER A 635 VAL A 640 0 SHEET 2 AA7 2 SER A 643 LEU A 648 -1 O ILE A 647 N LEU A 636 SHEET 1 AA8 3 ASN A 657 ASN A 659 0 SHEET 2 AA8 3 ARG A 664 ILE A 667 -1 O THR A 666 N ASN A 657 SHEET 3 AA8 3 LYS A 670 THR A 674 -1 O LYS A 670 N ILE A 667 SHEET 1 AA9 4 VAL A 686 GLU A 687 0 SHEET 2 AA9 4 PHE A 694 LYS A 699 -1 O ILE A 696 N GLU A 687 SHEET 3 AA9 4 VAL A 731 LYS A 736 -1 O LEU A 733 N LEU A 697 SHEET 4 AA9 4 LYS A 721 LEU A 725 -1 N ALA A 722 O VAL A 734 SITE 1 AC1 15 PHE A 323 SER A 324 PHE A 325 SER A 337 SITE 2 AC1 15 ARG A 355 HIS A 357 GLU A 361 LYS A 376 SITE 3 AC1 15 PHE A 404 GLN A 406 MET A 431 ASN A 510 SITE 4 AC1 15 VAL A 511 LEU A 512 HOH A 927 SITE 1 AC2 2 ARG A 355 ARG A 508 CRYST1 142.413 56.752 82.014 90.00 111.23 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007022 0.000000 0.002728 0.00000 SCALE2 0.000000 0.017621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013081 0.00000