HEADER TRANSFERASE 28-JUL-17 5WMI TITLE ARABIDOPSIS THALIANA PREPHENATE AMINOTRANSFERASE MUTANT- T84V COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND COMPND 3 GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: ATPPA-AT,PROTEIN MATERNAL EFFECT EMBRYO ARREST 17; COMPND 6 EC: 2.6.1.1,2.6.1.78,2.6.1.79; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PAT, AAT, MEE17, AT2G22250, T26C19.9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASPARTATE AMINOTRANSFERASE, PLP-DEPENDENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.JEZ,C.K.HOLLAND REVDAT 4 04-OCT-23 5WMI 1 REMARK REVDAT 3 27-NOV-19 5WMI 1 REMARK REVDAT 2 20-FEB-19 5WMI 1 JRNL REVDAT 1 08-AUG-18 5WMI 0 JRNL AUTH C.K.HOLLAND,D.A.BERKOVICH,M.L.KOHN,H.MAEDA,J.M.JEZ JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION AND INHIBITION OF JRNL TITL 2 PREPHENATE AMINOTRANSFERASE FROM ARABIDOPSIS. JRNL REF PLANT J. V. 94 304 2018 JRNL REFN ESSN 1365-313X JRNL PMID 29405514 JRNL DOI 10.1111/TPJ.13856 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 25706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1279 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6834 - 4.1511 0.95 2764 137 0.1325 0.1770 REMARK 3 2 4.1511 - 3.2961 0.91 2550 142 0.1515 0.1934 REMARK 3 3 3.2961 - 2.8798 1.00 2815 161 0.1784 0.2225 REMARK 3 4 2.8798 - 2.6166 1.00 2797 145 0.1947 0.2365 REMARK 3 5 2.6166 - 2.4292 1.00 2815 136 0.1865 0.2683 REMARK 3 6 2.4292 - 2.2860 1.00 2780 166 0.1885 0.2467 REMARK 3 7 2.2860 - 2.1715 0.86 2379 125 0.2153 0.2772 REMARK 3 8 2.1715 - 2.0770 1.00 2816 136 0.2146 0.2554 REMARK 3 9 2.0770 - 1.9971 0.97 2711 131 0.2334 0.3037 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3115 REMARK 3 ANGLE : 1.025 4224 REMARK 3 CHIRALITY : 0.037 493 REMARK 3 PLANARITY : 0.005 541 REMARK 3 DIHEDRAL : 13.751 1151 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4277 6.8028 41.2668 REMARK 3 T TENSOR REMARK 3 T11: 0.4772 T22: 0.3722 REMARK 3 T33: 0.6537 T12: -0.1144 REMARK 3 T13: 0.0015 T23: 0.0722 REMARK 3 L TENSOR REMARK 3 L11: 0.9154 L22: 0.8810 REMARK 3 L33: 3.4904 L12: -0.5285 REMARK 3 L13: 0.9363 L23: -1.6139 REMARK 3 S TENSOR REMARK 3 S11: 0.3147 S12: -0.0501 S13: 0.7420 REMARK 3 S21: 0.1719 S22: 0.1378 S23: 0.1258 REMARK 3 S31: -0.4422 S32: 0.0978 S33: -0.4379 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0715 -10.5296 59.1506 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.2360 REMARK 3 T33: 0.2343 T12: 0.0152 REMARK 3 T13: -0.0363 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 2.6276 L22: 1.2220 REMARK 3 L33: 1.3477 L12: -0.0871 REMARK 3 L13: -0.9557 L23: 0.7165 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.1207 S13: -0.0964 REMARK 3 S21: -0.0124 S22: 0.0494 S23: 0.0795 REMARK 3 S31: 0.0164 S32: 0.0427 S33: 0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 169 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8367 9.6525 65.9778 REMARK 3 T TENSOR REMARK 3 T11: 0.4164 T22: 0.4290 REMARK 3 T33: 0.4771 T12: -0.1042 REMARK 3 T13: 0.0940 T23: -0.1203 REMARK 3 L TENSOR REMARK 3 L11: 2.4815 L22: 0.9757 REMARK 3 L33: 0.9905 L12: -0.2426 REMARK 3 L13: -0.1804 L23: 0.1419 REMARK 3 S TENSOR REMARK 3 S11: 0.1333 S12: -0.3404 S13: 0.5153 REMARK 3 S21: 0.0974 S22: 0.0329 S23: -0.0693 REMARK 3 S31: -0.3248 S32: 0.2350 S33: -0.1697 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0015 -4.8784 59.4603 REMARK 3 T TENSOR REMARK 3 T11: 0.2801 T22: 0.2743 REMARK 3 T33: 0.3265 T12: -0.0147 REMARK 3 T13: 0.0370 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.6424 L22: 1.6707 REMARK 3 L33: 0.6275 L12: -0.3672 REMARK 3 L13: -0.6577 L23: -0.1009 REMARK 3 S TENSOR REMARK 3 S11: 0.1517 S12: 0.0681 S13: 0.0980 REMARK 3 S21: 0.0122 S22: -0.0397 S23: -0.0185 REMARK 3 S31: -0.1301 S32: -0.0862 S33: -0.1188 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3270 -5.0534 59.7219 REMARK 3 T TENSOR REMARK 3 T11: 0.2408 T22: 0.4449 REMARK 3 T33: 0.3325 T12: -0.0353 REMARK 3 T13: -0.0097 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 3.2581 L22: 2.6274 REMARK 3 L33: 1.4041 L12: 2.0957 REMARK 3 L13: -1.2249 L23: -1.8913 REMARK 3 S TENSOR REMARK 3 S11: 0.2230 S12: -0.5755 S13: -0.0931 REMARK 3 S21: 0.0719 S22: -0.2884 S23: -0.1950 REMARK 3 S31: -0.0376 S32: 0.4829 S33: 0.0532 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 409 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2329 2.9815 42.5913 REMARK 3 T TENSOR REMARK 3 T11: 0.3211 T22: 0.3410 REMARK 3 T33: 0.2796 T12: -0.0478 REMARK 3 T13: -0.0088 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 2.9827 L22: 4.9621 REMARK 3 L33: 3.4257 L12: 1.2149 REMARK 3 L13: -0.8906 L23: -1.1303 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: 0.1823 S13: 0.0802 REMARK 3 S21: -0.5212 S22: -0.0433 S23: -0.2518 REMARK 3 S31: 0.4150 S32: 0.1662 S33: 0.0646 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0977 -2.1663 51.0614 REMARK 3 T TENSOR REMARK 3 T11: 0.2026 T22: 0.3613 REMARK 3 T33: 0.3192 T12: -0.0446 REMARK 3 T13: 0.0159 T23: -0.0915 REMARK 3 L TENSOR REMARK 3 L11: 2.2614 L22: 3.3482 REMARK 3 L33: 1.9185 L12: 1.6523 REMARK 3 L13: -0.4411 L23: -1.6945 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.0857 S13: -0.1563 REMARK 3 S21: -0.1399 S22: 0.0492 S23: -0.1734 REMARK 3 S31: 0.1317 S32: 0.3009 S33: 0.1280 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229281. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25739 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WMH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG-6000, 100 MM CITRIC REMARK 280 ACID, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.51900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.86050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.51900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.86050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -24.54370 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 100.15040 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ILE A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 GLU A 18 REMARK 465 SER A 19 REMARK 465 PHE A 20 REMARK 465 PRO A 21 REMARK 465 ASP A 22 REMARK 465 SER A 23 REMARK 465 LYS A 24 REMARK 465 LYS A 25 REMARK 465 PRO A 26 REMARK 465 ILE A 27 REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 VAL A 30 REMARK 465 ARG A 31 REMARK 465 PHE A 32 REMARK 465 GLN A 33 REMARK 465 GLN A 34 REMARK 465 PRO A 35 REMARK 465 LEU A 36 REMARK 465 ARG A 37 REMARK 465 LEU A 38 REMARK 465 SER A 39 REMARK 465 PHE A 40 REMARK 465 SER A 41 REMARK 465 TYR A 42 REMARK 465 CYS A 43 REMARK 465 LYS A 44 REMARK 465 SER A 45 REMARK 465 GLY A 46 REMARK 465 ASN A 47 REMARK 465 MET A 48 REMARK 465 SER A 49 REMARK 465 SER A 50 REMARK 465 ARG A 51 REMARK 465 ILE A 52 REMARK 465 CYS A 53 REMARK 465 ALA A 54 REMARK 465 MET A 55 REMARK 465 ALA A 56 REMARK 465 LYS A 57 REMARK 465 PRO A 58 REMARK 465 ASN A 59 REMARK 465 ASP A 60 REMARK 465 ALA A 61 REMARK 465 GLU A 62 REMARK 465 THR A 63 REMARK 465 LEU A 64 REMARK 465 SER A 65 REMARK 465 SER A 66 REMARK 465 SER A 67 REMARK 465 VAL A 68 REMARK 465 ASP A 69 REMARK 465 GLN A 96 REMARK 465 VAL A 473 REMARK 465 SER A 474 REMARK 465 VAL A 475 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 105 -79.79 -103.63 REMARK 500 ASP A 110 53.15 -98.99 REMARK 500 ARG A 131 -167.22 -102.00 REMARK 500 ARG A 314 88.20 67.58 REMARK 500 ALA A 356 19.28 57.14 REMARK 500 ALA A 393 -158.61 63.15 REMARK 500 PHE A 411 -53.67 -120.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 501 DBREF 5WMI A 1 475 UNP Q9SIE1 PAT_ARATH 1 475 SEQADV 5WMI VAL A 84 UNP Q9SIE1 THR 84 ENGINEERED MUTATION SEQRES 1 A 475 MET ALA SER GLN SER SER VAL ALA VAL ILE SER SER ALA SEQRES 2 A 475 ALA ALA ARG GLY GLU SER PHE PRO ASP SER LYS LYS PRO SEQRES 3 A 475 ILE GLY SER VAL ARG PHE GLN GLN PRO LEU ARG LEU SER SEQRES 4 A 475 PHE SER TYR CYS LYS SER GLY ASN MET SER SER ARG ILE SEQRES 5 A 475 CYS ALA MET ALA LYS PRO ASN ASP ALA GLU THR LEU SER SEQRES 6 A 475 SER SER VAL ASP MET SER LEU SER PRO ARG VAL GLN SER SEQRES 7 A 475 LEU LYS PRO SER LYS VAL MET VAL ILE THR ASP LEU ALA SEQRES 8 A 475 ALA THR LEU VAL GLN SER GLY VAL PRO VAL ILE ARG LEU SEQRES 9 A 475 ALA ALA GLY GLU PRO ASP PHE ASP THR PRO LYS VAL VAL SEQRES 10 A 475 ALA GLU ALA GLY ILE ASN ALA ILE ARG GLU GLY PHE THR SEQRES 11 A 475 ARG TYR THR LEU ASN ALA GLY ILE THR GLU LEU ARG GLU SEQRES 12 A 475 ALA ILE CYS ARG LYS LEU LYS GLU GLU ASN GLY LEU SER SEQRES 13 A 475 TYR ALA PRO ASP GLN ILE LEU VAL SER ASN GLY ALA LYS SEQRES 14 A 475 GLN SER LEU LEU GLN ALA VAL LEU ALA VAL CYS SER PRO SEQRES 15 A 475 GLY ASP GLU VAL ILE ILE PRO ALA PRO TYR TRP VAL SER SEQRES 16 A 475 TYR THR GLU GLN ALA ARG LEU ALA ASP ALA THR PRO VAL SEQRES 17 A 475 VAL ILE PRO THR LYS ILE SER ASN ASN PHE LEU LEU ASP SEQRES 18 A 475 PRO LYS ASP LEU GLU SER LYS LEU THR GLU LYS SER ARG SEQRES 19 A 475 LEU LEU ILE LEU CYS SER PRO SER ASN PRO THR GLY SER SEQRES 20 A 475 VAL TYR PRO LYS SER LEU LEU GLU GLU ILE ALA ARG ILE SEQRES 21 A 475 ILE ALA LYS HIS PRO ARG LEU LEU VAL LEU SER ASP GLU SEQRES 22 A 475 ILE TYR GLU HIS ILE ILE TYR ALA PRO ALA THR HIS THR SEQRES 23 A 475 SER PHE ALA SER LEU PRO ASP MET TYR GLU ARG THR LEU SEQRES 24 A 475 THR VAL ASN GLY PHE SER LYS ALA PHE ALA MET THR GLY SEQRES 25 A 475 TRP ARG LEU GLY TYR LEU ALA GLY PRO LYS HIS ILE VAL SEQRES 26 A 475 ALA ALA CYS SER LYS LEU GLN GLY GLN VAL SER SER GLY SEQRES 27 A 475 ALA SER SER ILE ALA GLN LYS ALA GLY VAL ALA ALA LEU SEQRES 28 A 475 GLY LEU GLY LYS ALA GLY GLY GLU THR VAL ALA GLU MET SEQRES 29 A 475 VAL LYS ALA TYR ARG GLU ARG ARG ASP PHE LEU VAL LYS SEQRES 30 A 475 SER LEU GLY ASP ILE LYS GLY VAL LYS ILE SER GLU PRO SEQRES 31 A 475 GLN GLY ALA PHE TYR LEU PHE ILE ASP PHE SER ALA TYR SEQRES 32 A 475 TYR GLY SER GLU ALA GLU GLY PHE GLY LEU ILE ASN ASP SEQRES 33 A 475 SER SER SER LEU ALA LEU TYR PHE LEU ASP LYS PHE GLN SEQRES 34 A 475 VAL ALA MET VAL PRO GLY ASP ALA PHE GLY ASP ASP SER SEQRES 35 A 475 CYS ILE ARG ILE SER TYR ALA THR SER LEU ASP VAL LEU SEQRES 36 A 475 GLN ALA ALA VAL GLU LYS ILE ARG LYS ALA LEU GLU PRO SEQRES 37 A 475 LEU ARG ALA THR VAL SER VAL HET AKG A 501 10 HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 2 AKG C5 H6 O5 FORMUL 3 HOH *145(H2 O) HELIX 1 AA1 SER A 73 SER A 78 1 6 HELIX 2 AA2 SER A 82 VAL A 95 1 14 HELIX 3 AA3 PRO A 114 GLU A 127 1 14 HELIX 4 AA4 ILE A 138 GLY A 154 1 17 HELIX 5 AA5 ALA A 158 ASP A 160 5 3 HELIX 6 AA6 GLY A 167 CYS A 180 1 14 HELIX 7 AA7 VAL A 194 ALA A 203 1 10 HELIX 8 AA8 LYS A 213 ASN A 217 5 5 HELIX 9 AA9 ASP A 221 LEU A 229 1 9 HELIX 10 AB1 PRO A 250 ALA A 262 1 13 HELIX 11 AB2 SER A 287 LEU A 291 5 5 HELIX 12 AB3 MET A 294 GLU A 296 5 3 HELIX 13 AB4 PHE A 304 ALA A 309 1 6 HELIX 14 AB5 PRO A 321 SER A 336 1 16 HELIX 15 AB6 SER A 340 GLY A 352 1 13 HELIX 16 AB7 LEU A 353 ALA A 356 5 4 HELIX 17 AB8 GLY A 357 ASP A 381 1 25 HELIX 18 AB9 SER A 401 TYR A 404 5 4 HELIX 19 AC1 ASP A 416 GLN A 429 1 14 HELIX 20 AC2 ASP A 436 GLY A 439 5 4 HELIX 21 AC3 SER A 451 GLU A 467 1 17 SHEET 1 AA1 2 ILE A 102 ARG A 103 0 SHEET 2 AA1 2 VAL A 430 ALA A 431 1 O ALA A 431 N ILE A 102 SHEET 1 AA2 7 ILE A 162 SER A 165 0 SHEET 2 AA2 7 GLY A 316 ALA A 319 -1 O GLY A 316 N SER A 165 SHEET 3 AA2 7 THR A 298 GLY A 303 -1 N THR A 300 O ALA A 319 SHEET 4 AA2 7 LEU A 268 ASP A 272 1 N SER A 271 O LEU A 299 SHEET 5 AA2 7 SER A 233 CYS A 239 1 N LEU A 236 O LEU A 270 SHEET 6 AA2 7 GLU A 185 PRO A 189 1 N ILE A 187 O LEU A 235 SHEET 7 AA2 7 THR A 206 ILE A 210 1 O VAL A 208 N VAL A 186 SHEET 1 AA3 3 TYR A 395 ASP A 399 0 SHEET 2 AA3 3 CYS A 443 SER A 447 -1 O ILE A 446 N LEU A 396 SHEET 3 AA3 3 VAL A 433 PRO A 434 -1 N VAL A 433 O ARG A 445 SHEET 1 AA4 2 SER A 406 ALA A 408 0 SHEET 2 AA4 2 GLY A 412 ILE A 414 -1 O GLY A 412 N ALA A 408 CISPEP 1 ALA A 190 PRO A 191 0 -4.88 CISPEP 2 SER A 240 PRO A 241 0 -11.63 CISPEP 3 ASN A 243 PRO A 244 0 15.52 CISPEP 4 ALA A 281 PRO A 282 0 9.91 SITE 1 AC1 9 VAL A 84 ALA A 106 GLY A 107 GLU A 108 SITE 2 AC1 9 TRP A 193 ASN A 243 LYS A 306 TYR A 395 SITE 3 AC1 9 ARG A 445 CRYST1 117.038 67.721 51.557 90.00 103.77 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008544 0.000000 0.002094 0.00000 SCALE2 0.000000 0.014766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019970 0.00000