HEADER TRANSFERASE 29-JUL-17 5WMK TITLE ARABIDOPSIS THALIANA PREPHENATE AMINOTRANSFERASE DOUBLE MUTANT- T84V TITLE 2 K169V COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND COMPND 3 GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: ATPPA-AT,PROTEIN MATERNAL EFFECT EMBRYO ARREST 17; COMPND 6 EC: 2.6.1.1,2.6.1.78,2.6.1.79; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PAT, AAT, MEE17, AT2G22250, T26C19.9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLP-DEPENDENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.JEZ,C.K.HOLLAND REVDAT 4 04-OCT-23 5WMK 1 REMARK REVDAT 3 27-NOV-19 5WMK 1 REMARK REVDAT 2 20-FEB-19 5WMK 1 JRNL REVDAT 1 08-AUG-18 5WMK 0 JRNL AUTH C.K.HOLLAND,D.A.BERKOVICH,M.L.KOHN,H.MAEDA,J.M.JEZ JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION AND INHIBITION OF JRNL TITL 2 PREPHENATE AMINOTRANSFERASE FROM ARABIDOPSIS. JRNL REF PLANT J. V. 94 304 2018 JRNL REFN ESSN 1365-313X JRNL PMID 29405514 JRNL DOI 10.1111/TPJ.13856 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 73128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0206 - 4.1378 0.99 2745 158 0.1505 0.1614 REMARK 3 2 4.1378 - 3.2860 1.00 2720 151 0.1402 0.1512 REMARK 3 3 3.2860 - 2.8711 1.00 2692 148 0.1529 0.1719 REMARK 3 4 2.8711 - 2.6088 1.00 2719 112 0.1624 0.1695 REMARK 3 5 2.6088 - 2.4219 1.00 2709 142 0.1575 0.1564 REMARK 3 6 2.4219 - 2.2792 1.00 2716 118 0.1557 0.2211 REMARK 3 7 2.2792 - 2.1651 1.00 2653 148 0.1561 0.1813 REMARK 3 8 2.1651 - 2.0709 1.00 2686 156 0.1539 0.1698 REMARK 3 9 2.0709 - 1.9912 1.00 2709 122 0.1582 0.1863 REMARK 3 10 1.9912 - 1.9225 1.00 2644 160 0.1578 0.1721 REMARK 3 11 1.9225 - 1.8624 1.00 2711 133 0.1670 0.1739 REMARK 3 12 1.8624 - 1.8091 1.00 2673 141 0.1676 0.1715 REMARK 3 13 1.8091 - 1.7615 1.00 2662 134 0.1635 0.1782 REMARK 3 14 1.7615 - 1.7186 1.00 2703 152 0.1708 0.2110 REMARK 3 15 1.7186 - 1.6795 1.00 2669 136 0.1735 0.1796 REMARK 3 16 1.6795 - 1.6438 1.00 2678 132 0.1716 0.2084 REMARK 3 17 1.6438 - 1.6109 1.00 2678 150 0.1736 0.2168 REMARK 3 18 1.6109 - 1.5805 1.00 2647 162 0.1773 0.1993 REMARK 3 19 1.5805 - 1.5523 1.00 2694 133 0.1744 0.1958 REMARK 3 20 1.5523 - 1.5259 1.00 2689 143 0.1888 0.2285 REMARK 3 21 1.5259 - 1.5013 1.00 2661 169 0.1939 0.2273 REMARK 3 22 1.5013 - 1.4782 1.00 2620 129 0.2052 0.2303 REMARK 3 23 1.4782 - 1.4565 1.00 2660 145 0.2155 0.2195 REMARK 3 24 1.4565 - 1.4360 1.00 2704 139 0.2238 0.2375 REMARK 3 25 1.4360 - 1.4166 0.99 2617 147 0.2465 0.2525 REMARK 3 26 1.4166 - 1.3982 0.89 2384 125 0.2713 0.3169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3221 REMARK 3 ANGLE : 0.807 4393 REMARK 3 CHIRALITY : 0.073 514 REMARK 3 PLANARITY : 0.005 568 REMARK 3 DIHEDRAL : 12.519 1205 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7394 4.8903 -7.4682 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.1434 REMARK 3 T33: 0.1219 T12: -0.0402 REMARK 3 T13: -0.0272 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 5.7422 L22: 6.9015 REMARK 3 L33: 0.6434 L12: -5.4074 REMARK 3 L13: 0.1164 L23: -0.8960 REMARK 3 S TENSOR REMARK 3 S11: 0.0821 S12: 0.0907 S13: -0.0397 REMARK 3 S21: -0.3473 S22: 0.0228 S23: 0.1881 REMARK 3 S31: 0.1036 S32: -0.0908 S33: -0.0480 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1173 -14.7964 2.8011 REMARK 3 T TENSOR REMARK 3 T11: 0.1727 T22: 0.1471 REMARK 3 T33: 0.1160 T12: -0.0022 REMARK 3 T13: -0.0063 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 3.9130 L22: 0.6758 REMARK 3 L33: 0.2812 L12: 0.3954 REMARK 3 L13: -0.5294 L23: 0.0278 REMARK 3 S TENSOR REMARK 3 S11: -0.0559 S12: 0.0177 S13: -0.3002 REMARK 3 S21: -0.0861 S22: 0.0246 S23: -0.0351 REMARK 3 S31: -0.0171 S32: -0.0202 S33: 0.0437 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5879 7.1024 14.3953 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1267 REMARK 3 T33: 0.1071 T12: 0.0058 REMARK 3 T13: 0.0071 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.9794 L22: 0.4798 REMARK 3 L33: 0.4781 L12: 0.0113 REMARK 3 L13: 0.1588 L23: -0.1769 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: -0.0442 S13: 0.0839 REMARK 3 S21: 0.0112 S22: 0.0119 S23: -0.0328 REMARK 3 S31: -0.0440 S32: 0.0031 S33: 0.0317 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6162 3.3200 17.6752 REMARK 3 T TENSOR REMARK 3 T11: 0.1362 T22: 0.1534 REMARK 3 T33: 0.1262 T12: -0.0050 REMARK 3 T13: 0.0158 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.0496 L22: 0.7844 REMARK 3 L33: 0.4420 L12: -0.3829 REMARK 3 L13: -0.0129 L23: 0.1401 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: -0.0754 S13: 0.0148 REMARK 3 S21: 0.0077 S22: 0.0264 S23: -0.0063 REMARK 3 S31: -0.0281 S32: 0.0015 S33: -0.0156 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 336 THROUGH 380 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7653 -12.6219 12.5391 REMARK 3 T TENSOR REMARK 3 T11: 0.1115 T22: 0.0683 REMARK 3 T33: 0.0850 T12: 0.0208 REMARK 3 T13: -0.0022 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.7686 L22: 0.8414 REMARK 3 L33: 0.8254 L12: 0.6260 REMARK 3 L13: 0.2076 L23: 0.2400 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: -0.1170 S13: -0.1645 REMARK 3 S21: 0.0355 S22: -0.0213 S23: -0.0703 REMARK 3 S31: 0.0179 S32: 0.0659 S33: 0.0044 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 381 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2622 0.2113 1.5845 REMARK 3 T TENSOR REMARK 3 T11: 0.1153 T22: 0.1440 REMARK 3 T33: 0.1823 T12: -0.0064 REMARK 3 T13: 0.0271 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.9117 L22: 1.6733 REMARK 3 L33: 0.4978 L12: 0.6629 REMARK 3 L13: -0.2966 L23: -0.5462 REMARK 3 S TENSOR REMARK 3 S11: -0.0279 S12: -0.0276 S13: -0.0593 REMARK 3 S21: -0.1321 S22: -0.0126 S23: -0.2675 REMARK 3 S31: 0.0459 S32: 0.0647 S33: 0.0476 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000229288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 28.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WMH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG-1500, 100 MM MIB BUFFER REMARK 280 (SODIUM MALONATE DIBASIC MONOHYDRATE, IMIDAZOLE, BORIC ACID), PH REMARK 280 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.24900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.44550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.24900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.44550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 828 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 971 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ILE A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 17 REMARK 465 GLU A 18 REMARK 465 SER A 19 REMARK 465 PHE A 20 REMARK 465 PRO A 21 REMARK 465 ASP A 22 REMARK 465 SER A 23 REMARK 465 LYS A 24 REMARK 465 LYS A 25 REMARK 465 PRO A 26 REMARK 465 ILE A 27 REMARK 465 GLY A 28 REMARK 465 SER A 29 REMARK 465 VAL A 30 REMARK 465 ARG A 31 REMARK 465 PHE A 32 REMARK 465 GLN A 33 REMARK 465 GLN A 34 REMARK 465 PRO A 35 REMARK 465 LEU A 36 REMARK 465 ARG A 37 REMARK 465 LEU A 38 REMARK 465 SER A 39 REMARK 465 PHE A 40 REMARK 465 SER A 41 REMARK 465 TYR A 42 REMARK 465 CYS A 43 REMARK 465 LYS A 44 REMARK 465 SER A 45 REMARK 465 GLY A 46 REMARK 465 ASN A 47 REMARK 465 MET A 48 REMARK 465 SER A 49 REMARK 465 SER A 50 REMARK 465 ARG A 51 REMARK 465 ILE A 52 REMARK 465 CYS A 53 REMARK 465 ALA A 54 REMARK 465 MET A 55 REMARK 465 ALA A 56 REMARK 465 LYS A 57 REMARK 465 PRO A 58 REMARK 465 ASN A 59 REMARK 465 ASP A 60 REMARK 465 ALA A 61 REMARK 465 GLU A 62 REMARK 465 THR A 63 REMARK 465 LEU A 64 REMARK 465 SER A 65 REMARK 465 SER A 66 REMARK 465 SER A 67 REMARK 465 VAL A 68 REMARK 465 ASP A 69 REMARK 465 MET A 70 REMARK 465 SER A 474 REMARK 465 VAL A 475 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 680 O HOH A 998 2.09 REMARK 500 NH1 ARG A 75 OD1 ASP A 204 2.16 REMARK 500 OG SER A 242 OG1 THR A 245 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 740 O HOH A 901 2555 1.91 REMARK 500 OE2 GLU A 108 N TYR A 132 2555 2.04 REMARK 500 OE2 GLU A 226 NH2 ARG A 369 4556 2.14 REMARK 500 NH2 ARG A 314 OG SER A 336 2555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 105 -92.38 -91.41 REMARK 500 ARG A 314 78.18 72.78 REMARK 500 ALA A 393 -169.64 60.62 REMARK 500 PHE A 411 -54.49 -123.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1070 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1071 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A1072 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A1073 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1074 DISTANCE = 7.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BO3 A 502 DBREF 5WMK A 1 475 UNP Q9SIE1 PAT_ARATH 1 475 SEQADV 5WMK VAL A 84 UNP Q9SIE1 THR 84 ENGINEERED MUTATION SEQADV 5WMK VAL A 169 UNP Q9SIE1 LYS 169 ENGINEERED MUTATION SEQRES 1 A 475 MET ALA SER GLN SER SER VAL ALA VAL ILE SER SER ALA SEQRES 2 A 475 ALA ALA ARG GLY GLU SER PHE PRO ASP SER LYS LYS PRO SEQRES 3 A 475 ILE GLY SER VAL ARG PHE GLN GLN PRO LEU ARG LEU SER SEQRES 4 A 475 PHE SER TYR CYS LYS SER GLY ASN MET SER SER ARG ILE SEQRES 5 A 475 CYS ALA MET ALA LYS PRO ASN ASP ALA GLU THR LEU SER SEQRES 6 A 475 SER SER VAL ASP MET SER LEU SER PRO ARG VAL GLN SER SEQRES 7 A 475 LEU LYS PRO SER LYS VAL MET VAL ILE THR ASP LEU ALA SEQRES 8 A 475 ALA THR LEU VAL GLN SER GLY VAL PRO VAL ILE ARG LEU SEQRES 9 A 475 ALA ALA GLY GLU PRO ASP PHE ASP THR PRO LYS VAL VAL SEQRES 10 A 475 ALA GLU ALA GLY ILE ASN ALA ILE ARG GLU GLY PHE THR SEQRES 11 A 475 ARG TYR THR LEU ASN ALA GLY ILE THR GLU LEU ARG GLU SEQRES 12 A 475 ALA ILE CYS ARG LYS LEU LYS GLU GLU ASN GLY LEU SER SEQRES 13 A 475 TYR ALA PRO ASP GLN ILE LEU VAL SER ASN GLY ALA VAL SEQRES 14 A 475 GLN SER LEU LEU GLN ALA VAL LEU ALA VAL CYS SER PRO SEQRES 15 A 475 GLY ASP GLU VAL ILE ILE PRO ALA PRO TYR TRP VAL SER SEQRES 16 A 475 TYR THR GLU GLN ALA ARG LEU ALA ASP ALA THR PRO VAL SEQRES 17 A 475 VAL ILE PRO THR LYS ILE SER ASN ASN PHE LEU LEU ASP SEQRES 18 A 475 PRO LYS ASP LEU GLU SER LYS LEU THR GLU LYS SER ARG SEQRES 19 A 475 LEU LEU ILE LEU CYS SER PRO SER ASN PRO THR GLY SER SEQRES 20 A 475 VAL TYR PRO LYS SER LEU LEU GLU GLU ILE ALA ARG ILE SEQRES 21 A 475 ILE ALA LYS HIS PRO ARG LEU LEU VAL LEU SER ASP GLU SEQRES 22 A 475 ILE TYR GLU HIS ILE ILE TYR ALA PRO ALA THR HIS THR SEQRES 23 A 475 SER PHE ALA SER LEU PRO ASP MET TYR GLU ARG THR LEU SEQRES 24 A 475 THR VAL ASN GLY PHE SER LYS ALA PHE ALA MET THR GLY SEQRES 25 A 475 TRP ARG LEU GLY TYR LEU ALA GLY PRO LYS HIS ILE VAL SEQRES 26 A 475 ALA ALA CYS SER LYS LEU GLN GLY GLN VAL SER SER GLY SEQRES 27 A 475 ALA SER SER ILE ALA GLN LYS ALA GLY VAL ALA ALA LEU SEQRES 28 A 475 GLY LEU GLY LYS ALA GLY GLY GLU THR VAL ALA GLU MET SEQRES 29 A 475 VAL LYS ALA TYR ARG GLU ARG ARG ASP PHE LEU VAL LYS SEQRES 30 A 475 SER LEU GLY ASP ILE LYS GLY VAL LYS ILE SER GLU PRO SEQRES 31 A 475 GLN GLY ALA PHE TYR LEU PHE ILE ASP PHE SER ALA TYR SEQRES 32 A 475 TYR GLY SER GLU ALA GLU GLY PHE GLY LEU ILE ASN ASP SEQRES 33 A 475 SER SER SER LEU ALA LEU TYR PHE LEU ASP LYS PHE GLN SEQRES 34 A 475 VAL ALA MET VAL PRO GLY ASP ALA PHE GLY ASP ASP SER SEQRES 35 A 475 CYS ILE ARG ILE SER TYR ALA THR SER LEU ASP VAL LEU SEQRES 36 A 475 GLN ALA ALA VAL GLU LYS ILE ARG LYS ALA LEU GLU PRO SEQRES 37 A 475 LEU ARG ALA THR VAL SER VAL HET MLI A 501 9 HET BO3 A 502 4 HETNAM MLI MALONATE ION HETNAM BO3 BORIC ACID FORMUL 2 MLI C3 H2 O4 2- FORMUL 3 BO3 B H3 O3 FORMUL 4 HOH *474(H2 O) HELIX 1 AA1 SER A 73 LEU A 79 1 7 HELIX 2 AA2 SER A 82 SER A 97 1 16 HELIX 3 AA3 PRO A 114 GLU A 127 1 14 HELIX 4 AA4 ILE A 138 GLY A 154 1 17 HELIX 5 AA5 ALA A 158 ASP A 160 5 3 HELIX 6 AA6 GLY A 167 CYS A 180 1 14 HELIX 7 AA7 SER A 195 ALA A 203 1 9 HELIX 8 AA8 LYS A 213 ASN A 217 5 5 HELIX 9 AA9 ASP A 221 LEU A 229 1 9 HELIX 10 AB1 PRO A 250 LYS A 263 1 14 HELIX 11 AB2 SER A 287 LEU A 291 5 5 HELIX 12 AB3 MET A 294 GLU A 296 5 3 HELIX 13 AB4 MET A 310 ARG A 314 5 5 HELIX 14 AB5 PRO A 321 SER A 336 1 16 HELIX 15 AB6 SER A 340 GLY A 352 1 13 HELIX 16 AB7 LEU A 353 ALA A 356 5 4 HELIX 17 AB8 GLY A 357 ASP A 381 1 25 HELIX 18 AB9 SER A 401 TYR A 404 5 4 HELIX 19 AC1 ASP A 416 GLN A 429 1 14 HELIX 20 AC2 ASP A 436 GLY A 439 5 4 HELIX 21 AC3 SER A 451 GLU A 467 1 17 SHEET 1 AA1 2 ILE A 102 ARG A 103 0 SHEET 2 AA1 2 VAL A 430 ALA A 431 1 O ALA A 431 N ILE A 102 SHEET 1 AA2 7 ILE A 162 SER A 165 0 SHEET 2 AA2 7 GLY A 316 ALA A 319 -1 O GLY A 316 N SER A 165 SHEET 3 AA2 7 THR A 298 GLY A 303 -1 N THR A 300 O ALA A 319 SHEET 4 AA2 7 LEU A 268 ASP A 272 1 N VAL A 269 O LEU A 299 SHEET 5 AA2 7 SER A 233 CYS A 239 1 N LEU A 238 O LEU A 270 SHEET 6 AA2 7 GLU A 185 ALA A 190 1 N ILE A 187 O LEU A 235 SHEET 7 AA2 7 THR A 206 PRO A 211 1 O VAL A 208 N VAL A 186 SHEET 1 AA3 3 TYR A 395 ASP A 399 0 SHEET 2 AA3 3 CYS A 443 SER A 447 -1 O ILE A 446 N LEU A 396 SHEET 3 AA3 3 VAL A 433 PRO A 434 -1 N VAL A 433 O ARG A 445 SHEET 1 AA4 2 SER A 406 ALA A 408 0 SHEET 2 AA4 2 GLY A 412 ILE A 414 -1 O ILE A 414 N SER A 406 CISPEP 1 ALA A 190 PRO A 191 0 -1.99 CISPEP 2 SER A 240 PRO A 241 0 -7.29 CISPEP 3 ASN A 243 PRO A 244 0 21.64 CISPEP 4 ALA A 281 PRO A 282 0 9.56 SITE 1 AC1 10 VAL A 84 ALA A 106 GLY A 107 TRP A 193 SITE 2 AC1 10 ASN A 243 TYR A 275 LYS A 306 TYR A 395 SITE 3 AC1 10 ARG A 445 BO3 A 502 SITE 1 AC2 3 TRP A 193 ASP A 272 MLI A 501 CRYST1 116.498 64.891 51.933 90.00 105.87 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008584 0.000000 0.002440 0.00000 SCALE2 0.000000 0.015410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020018 0.00000