HEADER TRANSFERASE/TRANSFERASE INHIBITOR 01-AUG-17 5WNJ TITLE CRYSTAL STRUCTURE OF MURINE RECEPTOR-INTERACTING PROTEIN KINASE 4 TITLE 2 (RIPK4) D143N IN COMPLEX WITH LESTAURTINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-342; COMPND 5 SYNONYM: ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 3,PKC-ASSOCIATED COMPND 6 PROTEIN KINASE,PKC-REGULATED PROTEIN KINASE; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RIPK4, ANKRD3, PKK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, INHIBITOR, COMPLEX, TRANSFERASE, TRANSFERASE-TRANSFERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.S.HUANG,S.G.HYMOWITZ REVDAT 4 22-MAY-24 5WNJ 1 REMARK REVDAT 3 07-DEC-22 5WNJ 1 COMPND FORMUL REVDAT 2 16-MAY-18 5WNJ 1 JRNL REVDAT 1 09-MAY-18 5WNJ 0 JRNL AUTH C.S.HUANG,N.OBERBECK,Y.C.HSIAO,P.LIU,A.R.JOHNSON,V.M.DIXIT, JRNL AUTH 2 S.G.HYMOWITZ JRNL TITL CRYSTAL STRUCTURE OF RIPK4 REVEALS DIMERIZATION-DEPENDENT JRNL TITL 2 KINASE ACTIVITY. JRNL REF STRUCTURE V. 26 767 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29706531 JRNL DOI 10.1016/J.STR.2018.04.002 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 912 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1253 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 24 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.98000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.269 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.865 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2137 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1942 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2917 ; 1.232 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4481 ; 0.907 ; 2.988 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 5.643 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;32.958 ;22.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 336 ;12.721 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.582 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2361 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 440 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1053 ; 3.195 ; 6.662 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1052 ; 3.176 ; 6.658 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1311 ; 5.122 ; 9.967 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1312 ; 5.120 ; 9.973 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1084 ; 2.999 ; 6.579 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1085 ; 2.998 ; 6.579 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1607 ; 4.816 ; 9.770 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2343 ; 7.139 ;73.874 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2344 ; 7.137 ;73.857 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 0.2M MAGNESIUM REMARK 280 CHLORIDE, 10% 2-PROPANOL, 15% ETHYLENE GLYCOL, 10% PEG4000, REMARK 280 MICROBATCH, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.41250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.76800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.12350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.76800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.41250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.12350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.41250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.12350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.76800 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.12350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.41250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.76800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -72.76800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 ARG A 6 REMARK 465 GLY A 7 REMARK 465 ARG A 8 REMARK 465 TRP A 9 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 ASN A 168 REMARK 465 GLY A 169 REMARK 465 MET A 170 REMARK 465 SER A 171 REMARK 465 HIS A 172 REMARK 465 SER A 173 REMARK 465 HIS A 174 REMARK 465 ASP A 175 REMARK 465 LEU A 176 REMARK 465 SER A 177 REMARK 465 MET A 178 REMARK 465 ASP A 179 REMARK 465 GLY A 180 REMARK 465 LEU A 181 REMARK 465 PRO A 290 REMARK 465 ASP A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 465 VAL A 294 REMARK 465 LYS A 295 REMARK 465 ASP A 296 REMARK 465 LEU A 297 REMARK 465 ALA A 298 REMARK 465 HIS A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 GLY A 302 REMARK 465 GLU A 303 REMARK 465 LYS A 304 REMARK 465 SER A 305 REMARK 465 SER A 306 REMARK 465 LEU A 307 REMARK 465 GLU A 308 REMARK 465 SER A 309 REMARK 465 LYS A 310 REMARK 465 SER A 311 REMARK 465 GLU A 312 REMARK 465 ALA A 313 REMARK 465 ARG A 314 REMARK 465 PRO A 315 REMARK 465 GLU A 316 REMARK 465 SER A 317 REMARK 465 SER A 318 REMARK 465 ARG A 319 REMARK 465 LEU A 320 REMARK 465 LYS A 321 REMARK 465 ARG A 322 REMARK 465 ALA A 323 REMARK 465 SER A 324 REMARK 465 ALA A 325 REMARK 465 PRO A 326 REMARK 465 PRO A 327 REMARK 465 PHE A 328 REMARK 465 ASP A 329 REMARK 465 ASN A 330 REMARK 465 ASP A 331 REMARK 465 CYS A 332 REMARK 465 SER A 333 REMARK 465 LEU A 334 REMARK 465 SER A 335 REMARK 465 GLU A 336 REMARK 465 LEU A 337 REMARK 465 LEU A 338 REMARK 465 SER A 339 REMARK 465 GLN A 340 REMARK 465 LEU A 341 REMARK 465 ASP A 342 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 11 CG CD1 CD2 REMARK 470 LYS A 27 CD CE NZ REMARK 470 PHE A 33 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 35 CG CD OE1 NE2 REMARK 470 LEU A 56 CG CD1 CD2 REMARK 470 HIS A 57 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 58 CG1 CG2 REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 MET A 64 CE REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 LYS A 71 CD CE NZ REMARK 470 GLU A 74 CD OE1 OE2 REMARK 470 LYS A 77 CD CE NZ REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 106 CE NZ REMARK 470 SER A 136 OG REMARK 470 LYS A 145 NZ REMARK 470 PHE A 182 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 185 CG1 CG2 CD1 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 ILE A 229 CG1 CG2 CD1 REMARK 470 MET A 233 CG SD CE REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 ARG A 253 CZ NH1 NH2 REMARK 470 GLU A 288 CG CD OE1 OE2 REMARK 470 LYS A 289 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 90 -72.69 -54.07 REMARK 500 ASP A 161 84.85 60.62 REMARK 500 SER A 197 76.87 39.99 REMARK 500 LYS A 227 -75.26 -73.98 REMARK 500 GLU A 288 77.85 -68.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 90 PRO A 91 146.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2V9 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WNI RELATED DB: PDB REMARK 900 RELATED ID: 5WNK RELATED DB: PDB REMARK 900 RELATED ID: 5WNL RELATED DB: PDB REMARK 900 RELATED ID: 5WNM RELATED DB: PDB DBREF 5WNJ A 1 342 UNP Q9ERK0 RIPK4_MOUSE 1 342 SEQADV 5WNJ ASN A 143 UNP Q9ERK0 ASP 143 ENGINEERED MUTATION SEQRES 1 A 342 MET GLU GLY GLU GLY ARG GLY ARG TRP ALA LEU GLY LEU SEQRES 2 A 342 LEU ARG THR PHE ASP ALA GLY GLU PHE ALA GLY TRP GLU SEQRES 3 A 342 LYS VAL GLY SER GLY GLY PHE GLY GLN VAL TYR LYS VAL SEQRES 4 A 342 ARG HIS VAL HIS TRP LYS THR TRP LEU ALA ILE LYS CYS SEQRES 5 A 342 SER PRO SER LEU HIS VAL ASP ASP ARG GLU ARG MET GLU SEQRES 6 A 342 LEU LEU GLU GLU ALA LYS LYS MET GLU MET ALA LYS PHE SEQRES 7 A 342 ARG TYR ILE LEU PRO VAL TYR GLY ILE CYS GLN GLU PRO SEQRES 8 A 342 VAL GLY LEU VAL MET GLU TYR MET GLU THR GLY SER LEU SEQRES 9 A 342 GLU LYS LEU LEU ALA SER GLU PRO LEU PRO TRP ASP LEU SEQRES 10 A 342 ARG PHE ARG ILE VAL HIS GLU THR ALA VAL GLY MET ASN SEQRES 11 A 342 PHE LEU HIS CYS MET SER PRO PRO LEU LEU HIS LEU ASN SEQRES 12 A 342 LEU LYS PRO ALA ASN ILE LEU LEU ASP ALA HIS TYR HIS SEQRES 13 A 342 VAL LYS ILE SER ASP PHE GLY LEU ALA LYS CYS ASN GLY SEQRES 14 A 342 MET SER HIS SER HIS ASP LEU SER MET ASP GLY LEU PHE SEQRES 15 A 342 GLY THR ILE ALA TYR LEU PRO PRO GLU ARG ILE ARG GLU SEQRES 16 A 342 LYS SER ARG LEU PHE ASP THR LYS HIS ASP VAL TYR SER SEQRES 17 A 342 PHE ALA ILE VAL ILE TRP GLY VAL LEU THR GLN LYS LYS SEQRES 18 A 342 PRO PHE ALA ASP GLU LYS ASN ILE LEU HIS ILE MET MET SEQRES 19 A 342 LYS VAL VAL LYS GLY HIS ARG PRO GLU LEU PRO PRO ILE SEQRES 20 A 342 CYS ARG PRO ARG PRO ARG ALA CYS ALA SER LEU ILE GLY SEQRES 21 A 342 LEU MET GLN ARG CYS TRP HIS ALA ASP PRO GLN VAL ARG SEQRES 22 A 342 PRO THR PHE GLN GLU ILE THR SER GLU THR GLU ASP LEU SEQRES 23 A 342 CYS GLU LYS PRO ASP GLU GLU VAL LYS ASP LEU ALA HIS SEQRES 24 A 342 GLU PRO GLY GLU LYS SER SER LEU GLU SER LYS SER GLU SEQRES 25 A 342 ALA ARG PRO GLU SER SER ARG LEU LYS ARG ALA SER ALA SEQRES 26 A 342 PRO PRO PHE ASP ASN ASP CYS SER LEU SER GLU LEU LEU SEQRES 27 A 342 SER GLN LEU ASP HET 2V9 A 401 33 HET CL A 402 1 HETNAM 2V9 LESTAURTINIB HETNAM CL CHLORIDE ION HETSYN 2V9 (5S,6S,8R)-6-HYDROXY-6-(HYDROXYMETHYL)-5-METHYL-5,6,7, HETSYN 2 2V9 8-TETRAHYDRO-13H-5,8-EPOXY-4B,8A,14-TRIAZADIBENZO[B, HETSYN 3 2V9 H]CYCLOOCTA[1,2,3,4-JKL]CYCLOPENTA[E]-AS-INDACEN-13- HETSYN 4 2V9 ONE FORMUL 2 2V9 C26 H21 N3 O4 FORMUL 3 CL CL 1- FORMUL 4 HOH *24(H2 O) HELIX 1 AA1 ASP A 18 GLY A 20 5 3 HELIX 2 AA2 ASP A 59 ALA A 76 1 18 HELIX 3 AA3 LEU A 104 GLU A 111 1 8 HELIX 4 AA4 PRO A 114 MET A 135 1 22 HELIX 5 AA5 LYS A 145 ALA A 147 5 3 HELIX 6 AA6 PHE A 182 LEU A 188 5 7 HELIX 7 AA7 PRO A 189 GLU A 195 1 7 HELIX 8 AA8 ASP A 201 GLN A 219 1 19 HELIX 9 AA9 ASN A 228 LYS A 238 1 11 HELIX 10 AB1 ARG A 251 TRP A 266 1 16 HELIX 11 AB2 ASP A 269 ARG A 273 5 5 HELIX 12 AB3 THR A 275 GLU A 288 1 14 SHEET 1 AA1 6 ARG A 15 PHE A 17 0 SHEET 2 AA1 6 VAL A 84 CYS A 88 1 O ILE A 87 N PHE A 17 SHEET 3 AA1 6 GLY A 93 GLU A 97 -1 O VAL A 95 N GLY A 86 SHEET 4 AA1 6 THR A 46 CYS A 52 -1 N ALA A 49 O MET A 96 SHEET 5 AA1 6 VAL A 36 HIS A 41 -1 N VAL A 39 O LEU A 48 SHEET 6 AA1 6 PHE A 22 LYS A 27 -1 N ALA A 23 O ARG A 40 SHEET 1 AA2 3 GLY A 102 SER A 103 0 SHEET 2 AA2 3 ILE A 149 LEU A 151 -1 O LEU A 151 N GLY A 102 SHEET 3 AA2 3 VAL A 157 ILE A 159 -1 O LYS A 158 N LEU A 150 CISPEP 1 SER A 136 PRO A 137 0 -5.96 SITE 1 AC1 11 VAL A 28 GLY A 29 ALA A 49 LEU A 82 SITE 2 AC1 11 GLU A 97 TYR A 98 MET A 99 GLY A 102 SITE 3 AC1 11 ALA A 147 LEU A 150 SER A 160 SITE 1 AC2 3 ARG A 251 ARG A 253 ALA A 254 CRYST1 70.825 110.247 145.536 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014119 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009071 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006871 0.00000