HEADER TRANSPORT PROTEIN 01-AUG-17 5WOE TITLE SOLUTION STRUCTURE OF THE SORTING NEXIN 25 PHOX-HOMOLOGY DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING NEXIN-25; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNX25, MSTP043; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDOSOME, MDM1, PX DOMAIN, PXA DOMAIN, PXC DOMAIN, RGS DOMAIN, KEYWDS 2 SORTING NEXIN, SNX, SNX13, SNX14, SNX19, SNX25, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.K.Y.CHIN,C.MAS,M.MOBLI,B.M.COLLINS REVDAT 4 15-MAY-24 5WOE 1 REMARK REVDAT 3 14-JUN-23 5WOE 1 REMARK REVDAT 2 21-AUG-19 5WOE 1 JRNL REMARK REVDAT 1 08-AUG-18 5WOE 0 JRNL AUTH M.CHANDRA,Y.K.CHIN,C.MAS,J.R.FEATHERS,B.PAUL,S.DATTA, JRNL AUTH 2 K.E.CHEN,X.JIA,Z.YANG,S.J.NORWOOD,B.MOHANTY,A.BUGARCIC, JRNL AUTH 3 R.D.TEASDALE,W.M.HENNE,M.MOBLI,B.M.COLLINS JRNL TITL CLASSIFICATION OF THE HUMAN PHOX HOMOLOGY (PX) DOMAINS BASED JRNL TITL 2 ON THEIR PHOSPHOINOSITIDE BINDING SPECIFICITIES. JRNL REF NAT COMMUN V. 10 1528 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 30948714 JRNL DOI 10.1038/S41467-019-09355-Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WOE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229146. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 SNX25, 20 MM HEPES, 100 MM NACL, REMARK 210 2 MM DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 2D 1H-15N REMARK 210 HSQC; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS, CYANA, ROWLAND NMR REMARK 210 TOOLKIT, TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 742 37.94 -94.13 REMARK 500 1 PRO A 785 74.10 -69.72 REMARK 500 2 ASN A 668 52.59 -114.71 REMARK 500 2 LEU A 669 -169.71 -79.37 REMARK 500 2 LYS A 742 32.86 -95.50 REMARK 500 2 PRO A 785 75.09 -69.82 REMARK 500 3 PRO A 785 76.29 -69.73 REMARK 500 4 ASN A 668 61.51 -110.07 REMARK 500 4 PRO A 785 73.34 -69.86 REMARK 500 5 PRO A 785 75.23 -69.92 REMARK 500 6 SER A 667 -52.21 -123.66 REMARK 500 6 LYS A 746 68.17 -116.86 REMARK 500 6 PRO A 785 74.92 -69.76 REMARK 500 7 ASP A 749 -169.96 -102.64 REMARK 500 7 PRO A 785 76.33 -69.75 REMARK 500 8 PRO A 785 74.03 -69.83 REMARK 500 9 LYS A 742 35.14 -95.26 REMARK 500 9 PRO A 785 71.54 -69.68 REMARK 500 10 PRO A 785 75.99 -69.90 REMARK 500 11 LYS A 742 35.78 -95.40 REMARK 500 11 PRO A 785 76.07 -69.70 REMARK 500 12 PRO A 785 75.02 -69.73 REMARK 500 13 PRO A 785 74.62 -69.65 REMARK 500 14 LEU A 669 -169.89 -100.73 REMARK 500 14 LYS A 742 33.61 -95.40 REMARK 500 14 PRO A 785 75.94 -69.76 REMARK 500 15 LYS A 742 35.77 -95.05 REMARK 500 15 PRO A 785 73.27 -69.73 REMARK 500 16 LEU A 669 -169.80 -120.36 REMARK 500 16 PRO A 785 73.08 -69.82 REMARK 500 17 LEU A 669 -169.41 -101.05 REMARK 500 17 SER A 741 -169.31 -100.38 REMARK 500 17 PRO A 785 74.73 -69.83 REMARK 500 18 LEU A 669 -169.41 -102.82 REMARK 500 18 PRO A 785 75.36 -69.71 REMARK 500 19 LYS A 742 35.26 -95.36 REMARK 500 19 PRO A 785 73.52 -69.77 REMARK 500 20 LYS A 742 33.81 -95.00 REMARK 500 20 PRO A 785 74.29 -69.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30321 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE SORTING NEXIN 25 PHOX-HOMOLOGY DOMAIN DBREF 5WOE A 668 790 UNP Q9H3E2 SNX25_HUMAN 506 628 SEQADV 5WOE GLY A 666 UNP Q9H3E2 EXPRESSION TAG SEQADV 5WOE SER A 667 UNP Q9H3E2 EXPRESSION TAG SEQRES 1 A 125 GLY SER ASN LEU GLY MET TRP LYS ALA SER ILE THR SER SEQRES 2 A 125 GLY GLU VAL THR GLU GLU ASN GLY GLU GLN LEU PRO CYS SEQRES 3 A 125 TYR PHE VAL MET VAL SER LEU GLN GLU VAL GLY GLY VAL SEQRES 4 A 125 GLU THR LYS ASN TRP THR VAL PRO ARG ARG LEU SER GLU SEQRES 5 A 125 PHE GLN ASN LEU HIS ARG LYS LEU SER GLU CYS VAL PRO SEQRES 6 A 125 SER LEU LYS LYS VAL GLN LEU PRO SER LEU SER LYS LEU SEQRES 7 A 125 PRO PHE LYS SER ILE ASP GLN LYS PHE MET GLU LYS SER SEQRES 8 A 125 LYS ASN GLN LEU ASN LYS PHE LEU GLN ASN LEU LEU SER SEQRES 9 A 125 ASP GLU ARG LEU CYS GLN SER GLU ALA LEU TYR ALA PHE SEQRES 10 A 125 LEU SER PRO SER PRO ASP TYR LEU HELIX 1 AA1 LEU A 715 VAL A 729 1 15 HELIX 2 AA2 PRO A 730 VAL A 735 5 6 HELIX 3 AA3 ASP A 749 ASP A 770 1 22 HELIX 4 AA4 ASP A 770 SER A 776 1 7 HELIX 5 AA5 SER A 776 SER A 784 1 9 SHEET 1 AA1 3 TRP A 672 GLU A 684 0 SHEET 2 AA1 3 GLU A 687 LEU A 698 -1 O MET A 695 N SER A 675 SHEET 3 AA1 3 LYS A 707 ARG A 714 -1 O ARG A 713 N TYR A 692 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1