HEADER HYDROLASE 03-AUG-17 5WOT TITLE NMR SOLUTION STRUCTURE OF A-LYTIC PROTEASE USING TWO 4D-SPECTRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-LYTIC PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 200-397; COMPND 5 SYNONYM: ALPHA-LYTIC ENDOPEPTIDASE; COMPND 6 EC: 3.4.21.12 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYSOBACTER ENZYMOGENES; SOURCE 3 ORGANISM_TAXID: 69 KEYWDS PROTEASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.EVANGELIDIS,S.NERLI,N.G.SGOURAKIS,K.TRIPSIANES REVDAT 4 23-OCT-24 5WOT 1 REMARK REVDAT 3 14-JUN-23 5WOT 1 SSBOND REVDAT 2 11-DEC-19 5WOT 1 REMARK REVDAT 1 07-FEB-18 5WOT 0 JRNL AUTH T.EVANGELIDIS,S.NERLI,J.NOVACEK,A.E.BRERETON,P.A.KARPLUS, JRNL AUTH 2 R.R.DOTAS,V.VENDITTI,N.G.SGOURAKIS,K.TRIPSIANES JRNL TITL AUTOMATED NMR RESONANCE ASSIGNMENTS AND STRUCTURE JRNL TITL 2 DETERMINATION USING A MINIMAL SET OF 4D SPECTRA. JRNL REF NAT COMMUN V. 9 384 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29374165 JRNL DOI 10.1038/S41467-017-02592-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA REMARK 3 AUTHORS : SHEN, VERNON, BAKER AND BAX REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000228214. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.0 MM [U-13C; U-15N] ALPHA REMARK 210 -LYTIC PROTEASE PROTEIN, 92% H2O/ REMARK 210 8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D HC(CC-TOCSY(CO))NH; 4D REMARK 210 13C,15N EDITED HMQC-NOESY-HSQC; REMARK 210 4D 13C,13C EDITED HMQC-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : 4D-CHAINS, CS-ROSETTA, SPARKY REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 14 -64.65 -133.33 REMARK 500 1 SER A 91 35.91 -143.66 REMARK 500 1 ARG A 105 -68.19 -121.08 REMARK 500 2 ALA A 14 -63.73 -133.49 REMARK 500 2 ARG A 25 85.82 -160.01 REMARK 500 2 ASN A 62 -169.53 -168.37 REMARK 500 2 SER A 84 -166.71 -117.45 REMARK 500 2 GLN A 155 -57.11 -131.02 REMARK 500 3 ALA A 14 -64.34 -133.33 REMARK 500 3 PHE A 59 131.24 -176.76 REMARK 500 3 PRO A 60 -155.91 -82.13 REMARK 500 3 ALA A 154 91.25 -67.94 REMARK 500 4 THR A 39 -167.33 -112.76 REMARK 500 4 PHE A 54 97.20 -69.02 REMARK 500 4 PRO A 60 -158.42 -79.45 REMARK 500 4 SER A 84 -158.47 -125.51 REMARK 500 4 ASN A 118 61.76 63.03 REMARK 500 4 GLN A 155 -65.74 -91.59 REMARK 500 5 ALA A 14 -107.63 -141.46 REMARK 500 5 PHE A 59 129.36 -174.65 REMARK 500 5 PRO A 60 -152.44 -85.29 REMARK 500 5 ASN A 62 -164.79 -118.79 REMARK 500 5 ASN A 168 102.08 -168.51 REMARK 500 6 ALA A 14 -64.35 -133.38 REMARK 500 6 THR A 39 -166.21 -107.80 REMARK 500 6 PRO A 60 -160.01 -79.15 REMARK 500 6 SER A 84 -158.10 -126.21 REMARK 500 6 SER A 91 35.22 -142.56 REMARK 500 6 ASN A 118 79.19 74.12 REMARK 500 6 ASN A 169 169.17 75.53 REMARK 500 7 ALA A 14 -46.31 -140.75 REMARK 500 7 HIS A 36 -34.14 -142.41 REMARK 500 7 PRO A 60 -157.88 -80.09 REMARK 500 7 SER A 84 -166.45 -117.57 REMARK 500 7 THR A 197 149.17 -170.58 REMARK 500 8 ALA A 14 -64.33 -133.41 REMARK 500 8 SER A 84 -166.24 -117.82 REMARK 500 8 SER A 91 35.81 -143.57 REMARK 500 8 ASN A 118 62.79 63.40 REMARK 500 8 SER A 159 -84.63 -90.76 REMARK 500 9 ALA A 14 -64.30 -133.39 REMARK 500 9 PHE A 59 133.80 179.96 REMARK 500 9 PRO A 60 -154.98 -81.24 REMARK 500 9 SER A 91 49.93 -170.37 REMARK 500 9 ASN A 168 129.85 -172.27 REMARK 500 10 PRO A 60 -158.32 -79.80 REMARK 500 10 ASP A 63 69.13 -151.52 REMARK 500 10 SER A 84 -158.86 -115.73 REMARK 500 10 ASN A 135 51.56 -151.17 REMARK 500 10 SER A 159 -81.08 -122.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30322 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF A-LYTIC PROTEASE USING TWO 4D-SPECTRA DBREF 5WOT A 1 198 UNP P00778 PRLA_LYSEN 200 397 SEQRES 1 A 198 ALA ASN ILE VAL GLY GLY ILE GLU TYR SER ILE ASN ASN SEQRES 2 A 198 ALA SER LEU CYS SER VAL GLY PHE SER VAL THR ARG GLY SEQRES 3 A 198 ALA THR LYS GLY PHE VAL THR ALA GLY HIS CYS GLY THR SEQRES 4 A 198 VAL ASN ALA THR ALA ARG ILE GLY GLY ALA VAL VAL GLY SEQRES 5 A 198 THR PHE ALA ALA ARG VAL PHE PRO GLY ASN ASP ARG ALA SEQRES 6 A 198 TRP VAL SER LEU THR SER ALA GLN THR LEU LEU PRO ARG SEQRES 7 A 198 VAL ALA ASN GLY SER SER PHE VAL THR VAL ARG GLY SER SEQRES 8 A 198 THR GLU ALA ALA VAL GLY ALA ALA VAL CYS ARG SER GLY SEQRES 9 A 198 ARG THR THR GLY TYR GLN CYS GLY THR ILE THR ALA LYS SEQRES 10 A 198 ASN VAL THR ALA ASN TYR ALA GLU GLY ALA VAL ARG GLY SEQRES 11 A 198 LEU THR GLN GLY ASN ALA CYS MET GLY ARG GLY ASP SER SEQRES 12 A 198 GLY GLY SER TRP ILE THR SER ALA GLY GLN ALA GLN GLY SEQRES 13 A 198 VAL MET SER GLY GLY ASN VAL GLN SER ASN GLY ASN ASN SEQRES 14 A 198 CYS GLY ILE PRO ALA SER GLN ARG SER SER LEU PHE GLU SEQRES 15 A 198 ARG LEU GLN PRO ILE LEU SER GLN TYR GLY LEU SER LEU SEQRES 16 A 198 VAL THR GLY HELIX 1 AA1 HIS A 36 GLY A 38 5 3 HELIX 2 AA2 ASN A 168 ILE A 172 5 5 HELIX 3 AA3 PRO A 173 ARG A 177 5 5 HELIX 4 AA4 LEU A 184 SER A 189 1 6 SHEET 1 AA1 3 ASN A 2 GLY A 5 0 SHEET 2 AA1 3 THR A 74 ASN A 81 1 O ALA A 80 N GLY A 5 SHEET 3 AA1 3 SER A 84 THR A 87 -1 O SER A 84 N ASN A 81 SHEET 1 AA2 8 SER A 15 SER A 18 0 SHEET 2 AA2 8 GLU A 8 ILE A 11 -1 N TYR A 9 O CYS A 17 SHEET 3 AA2 8 THR A 43 ILE A 46 -1 O ARG A 45 N SER A 10 SHEET 4 AA2 8 ALA A 49 VAL A 58 -1 O GLY A 52 N ALA A 44 SHEET 5 AA2 8 ARG A 64 LEU A 69 -1 O ARG A 64 N VAL A 58 SHEET 6 AA2 8 THR A 28 ALA A 34 -1 N PHE A 31 O VAL A 67 SHEET 7 AA2 8 PHE A 21 ARG A 25 -1 N PHE A 21 O VAL A 32 SHEET 8 AA2 8 SER A 194 LEU A 195 -1 O SER A 194 N THR A 24 SHEET 1 AA3 7 ALA A 99 SER A 103 0 SHEET 2 AA3 7 TYR A 109 TYR A 123 -1 O GLN A 110 N ARG A 102 SHEET 3 AA3 7 GLY A 126 GLY A 134 -1 O LEU A 131 N VAL A 119 SHEET 4 AA3 7 SER A 179 ARG A 183 -1 O PHE A 181 N THR A 132 SHEET 5 AA3 7 ALA A 154 GLY A 161 -1 N GLY A 160 O LEU A 180 SHEET 6 AA3 7 SER A 146 ILE A 148 -1 N TRP A 147 O GLN A 155 SHEET 7 AA3 7 ALA A 99 SER A 103 -1 N CYS A 101 O ILE A 148 SSBOND 1 CYS A 17 CYS A 37 1555 1555 2.07 SSBOND 2 CYS A 101 CYS A 111 1555 1555 2.05 SSBOND 3 CYS A 137 CYS A 170 1555 1555 2.12 CISPEP 1 PHE A 59 PRO A 60 1 -0.96 CISPEP 2 PHE A 59 PRO A 60 2 2.18 CISPEP 3 PHE A 59 PRO A 60 3 -5.56 CISPEP 4 PHE A 59 PRO A 60 4 5.38 CISPEP 5 PHE A 59 PRO A 60 5 -4.43 CISPEP 6 PHE A 59 PRO A 60 6 -2.53 CISPEP 7 PHE A 59 PRO A 60 7 -3.48 CISPEP 8 PHE A 59 PRO A 60 8 -3.97 CISPEP 9 PHE A 59 PRO A 60 9 -1.65 CISPEP 10 PHE A 59 PRO A 60 10 -5.30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1