HEADER TRANSCRIPTION REGULATOR 03-AUG-17 5WOZ TITLE NMR SOLUTION STRUCTURE OF RTT103 (RTT) PROTEIN USING TWO 4D-SPECTRA COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGULATOR OF TY1 TRANSPOSITION PROTEIN 103; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 5-131; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: RTT103, YDR289C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA POLYMERASE II CORE BINDER, TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.EVANGELIDIS,S.NERLI,N.G.SGOURAKIS,K.TRIPSIANES REVDAT 2 01-MAY-24 5WOZ 1 REMARK REVDAT 1 07-FEB-18 5WOZ 0 JRNL AUTH T.EVANGELIDIS,S.NERLI,J.NOVACEK,A.E.BRERETON,P.A.KARPLUS, JRNL AUTH 2 R.R.DOTAS,V.VENDITTI,N.G.SGOURAKIS,K.TRIPSIANES JRNL TITL AUTOMATED NMR RESONANCE ASSIGNMENTS AND STRUCTURE JRNL TITL 2 DETERMINATION USING A MINIMAL SET OF 4D SPECTRA. JRNL REF NAT COMMUN V. 9 384 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29374165 JRNL DOI 10.1038/S41467-017-02592-Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA REMARK 3 AUTHORS : SHEN, VERNON, BAKER AND BAX REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000228216. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 35 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-13C; U-15N] RTT103 REMARK 210 (RTT) PROTEIN, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D HC(CC TOCSY(CO))NH; 4D REMARK 210 13C,15N EDITED HMQC-NOESY-HSQC; REMARK 210 4D 13C,13C EDITED HMQC-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : 4D-CHAINS, CS-ROSETTA, SPARKY REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 4 ASP A 31 41.36 -107.96 REMARK 500 4 GLU A 132 79.95 -69.57 REMARK 500 6 GLN A 28 54.27 -108.75 REMARK 500 7 GLN A 28 49.01 -102.92 REMARK 500 9 SER A 14 140.06 -171.88 REMARK 500 9 GLN A 28 44.88 -103.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30327 RELATED DB: BMRB REMARK 900 NMR SOLUTION STRUCTURE OF RTT103 (RTT) PROTEIN USING TWO 4D-SPECTRA DBREF 5WOZ A 1 127 UNP Q05543 RT103_YEAST 5 131 SEQADV 5WOZ ALA A 128 UNP Q05543 EXPRESSION TAG SEQADV 5WOZ ALA A 129 UNP Q05543 EXPRESSION TAG SEQADV 5WOZ ALA A 130 UNP Q05543 EXPRESSION TAG SEQADV 5WOZ LEU A 131 UNP Q05543 EXPRESSION TAG SEQADV 5WOZ GLU A 132 UNP Q05543 EXPRESSION TAG SEQADV 5WOZ HIS A 133 UNP Q05543 EXPRESSION TAG SEQADV 5WOZ HIS A 134 UNP Q05543 EXPRESSION TAG SEQADV 5WOZ HIS A 135 UNP Q05543 EXPRESSION TAG SEQADV 5WOZ HIS A 136 UNP Q05543 EXPRESSION TAG SEQADV 5WOZ HIS A 137 UNP Q05543 EXPRESSION TAG SEQADV 5WOZ HIS A 138 UNP Q05543 EXPRESSION TAG SEQRES 1 A 138 SER GLU GLN PHE THR THR LYS LEU ASN THR LEU GLU ASP SEQRES 2 A 138 SER GLN GLU SER ILE SER SER ALA SER LYS TRP LEU LEU SEQRES 3 A 138 LEU GLN TYR ARG ASP ALA PRO LYS VAL ALA GLU MET TRP SEQRES 4 A 138 LYS GLU TYR MET LEU ARG PRO SER VAL ASN THR ARG ARG SEQRES 5 A 138 LYS LEU LEU GLY LEU TYR LEU MET ASN HIS VAL VAL GLN SEQRES 6 A 138 GLN ALA LYS GLY GLN LYS ILE ILE GLN PHE GLN ASP SER SEQRES 7 A 138 PHE GLY LYS VAL ALA ALA GLU VAL LEU GLY ARG ILE ASN SEQRES 8 A 138 GLN GLU PHE PRO ARG ASP LEU LYS LYS LYS LEU SER ARG SEQRES 9 A 138 VAL VAL ASN ILE LEU LYS GLU ARG ASN ILE PHE SER LYS SEQRES 10 A 138 GLN VAL VAL ASN ASP ILE GLU ARG SER LEU ALA ALA ALA SEQRES 11 A 138 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 SER A 1 THR A 10 1 10 HELIX 2 AA2 SER A 14 GLN A 28 1 15 HELIX 3 AA3 ASP A 31 ARG A 45 1 15 HELIX 4 AA4 ASN A 49 LYS A 71 1 23 HELIX 5 AA5 ILE A 72 PHE A 94 1 23 HELIX 6 AA6 PRO A 95 ARG A 112 1 18 HELIX 7 AA7 SER A 116 HIS A 133 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1