HEADER GENE REGULATION 03-AUG-17 5WP3 TITLE CRYSTAL STRUCTURE OF EED IN COMPLEX WITH EB22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN EED; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 75-401; COMPND 5 SYNONYM: HEED,EMBRYONIC ECTODERM DEVELOPMENT PROTEIN,WD PROTEIN COMPND 6 ASSOCIATING WITH INTEGRIN CYTOPLASMIC TAILS 1,WAIT-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: EB22; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V3R; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28GST-LIC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,W.TEMPEL,L.ZHU,J.D.MOODY,D.BAKER,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 04-OCT-23 5WP3 1 REMARK REVDAT 2 06-DEC-17 5WP3 1 JRNL REVDAT 1 13-SEP-17 5WP3 0 JRNL AUTH J.D.MOODY,S.LEVY,J.MATHIEU,Y.XING,W.KIM,C.DONG,W.TEMPEL, JRNL AUTH 2 A.M.ROBITAILLE,L.T.DANG,A.FERRECCIO,D.DETRAUX,S.SIDHU,L.ZHU, JRNL AUTH 3 L.CARTER,C.XU,C.VALENSISI,Y.WANG,R.D.HAWKINS,J.MIN,R.T.MOON, JRNL AUTH 4 S.H.ORKIN,D.BAKER,H.RUOHOLA-BAKER JRNL TITL FIRST CRITICAL REPRESSIVE H3K27ME3 MARKS IN EMBRYONIC STEM JRNL TITL 2 CELLS IDENTIFIED USING DESIGNED PROTEIN INHIBITOR. JRNL REF PROC. NATL. ACAD. SCI. V. 114 10125 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28864533 JRNL DOI 10.1073/PNAS.1706907114 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16116 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 808 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.73 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2875 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2722 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.32 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 153 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.46910 REMARK 3 B22 (A**2) : -23.36340 REMARK 3 B33 (A**2) : 10.89430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.360 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.612 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.282 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.608 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.285 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.896 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3455 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4704 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1127 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 77 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 518 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3455 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 482 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3847 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.12 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.98 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 65.9169 159.3420 73.5043 REMARK 3 T TENSOR REMARK 3 T11: -0.0849 T22: -0.0871 REMARK 3 T33: -0.1957 T12: 0.0470 REMARK 3 T13: 0.0047 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.7471 L22: 2.6487 REMARK 3 L33: 1.2598 L12: 0.6947 REMARK 3 L13: -0.0297 L23: -0.1737 REMARK 3 S TENSOR REMARK 3 S11: -0.1669 S12: -0.0404 S13: -0.0693 REMARK 3 S21: -0.0561 S22: 0.1164 S23: 0.0675 REMARK 3 S31: -0.0080 S32: -0.1467 S33: 0.0505 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 72.0456 145.9240 92.9666 REMARK 3 T TENSOR REMARK 3 T11: 0.0206 T22: -0.1138 REMARK 3 T33: -0.1412 T12: 0.0792 REMARK 3 T13: -0.0647 T23: 0.0734 REMARK 3 L TENSOR REMARK 3 L11: 3.8385 L22: 2.6206 REMARK 3 L33: 4.1210 L12: -0.4162 REMARK 3 L13: -3.1059 L23: 1.0176 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: -0.3770 S13: -0.4485 REMARK 3 S21: 0.4458 S22: -0.1450 S23: -0.1336 REMARK 3 S31: 0.1989 S32: 0.3538 S33: 0.1754 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HIGHER RESOLUTION EED STRUCTURES, SUCH REMARK 3 AS PDB ENTRY 3K26, WERE USED FOR THE INTERPRETATION OF POOR REMARK 3 ELECTRON DENSITY. EED BACKBONE COORDINATES WERE RESTRAINED TO A REMARK 3 PHENIX.ROSETTA_REFINE MODEL. WEAK ELECTRON DENSITY AT AND AROUND REMARK 3 EB22 RESIDUE LEU-68 SUGGESTED A HELICAL FOLD AND WAS INTERPRETED REMARK 3 HOMOLOGOUSLY TO PDB ENTRY 3LF9. REMARK 4 REMARK 4 5WP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-17. REMARK 100 THE DEPOSITION ID IS D_1000229241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17102 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 57.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.17900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2QXV, 3LF9. THE AMINO ACID SEQUENCE OF REMARK 200 PDB ENTRY 3LF9 WAS MODIFIED WITH THE CCP4 PROGRAM CHAINSAW TO REMARK 200 MATCH THE EB22 TARGET SEQUENCE. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-3350, 0.2 M SODIUM BROMIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.53500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.14500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.53500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.14500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 74 REMARK 465 SER A 75 REMARK 465 LYS A 76 REMARK 465 LYS A 284 REMARK 465 THR A 285 REMARK 465 ASN A 286 REMARK 465 ARG A 287 REMARK 465 PRO A 288 REMARK 465 ARG B 28 REMARK 465 THR B 29 REMARK 465 GLY B 30 REMARK 465 GLY B 31 REMARK 465 GLY B 32 REMARK 465 SER B 72 REMARK 465 ASP B 73 REMARK 465 LYS B 74 REMARK 465 GLU B 75 REMARK 465 VAL B 76 REMARK 465 VAL B 113 REMARK 465 LEU B 114 REMARK 465 GLU B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 83 CE NZ REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 ASN A 93 CG OD1 ND2 REMARK 470 SER A 105 OG REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 SER A 128 OG REMARK 470 ASP A 144 OD1 OD2 REMARK 470 TYR A 154 CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 156 OG REMARK 470 THR A 158 OG1 CG2 REMARK 470 SER A 159 OG REMARK 470 HIS A 160 ND1 CD2 CE1 NE2 REMARK 470 ARG A 169 NE CZ NH1 NH2 REMARK 470 HIS A 189 ND1 CD2 CE1 NE2 REMARK 470 ARG A 201 NE CZ NH1 NH2 REMARK 470 SER A 210 OG REMARK 470 LYS A 211 NZ REMARK 470 HIS A 213 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 232 CG1 CG2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 258 ND1 CD2 CE1 NE2 REMARK 470 LYS A 268 CD CE NZ REMARK 470 LYS A 275 CD CE NZ REMARK 470 ASN A 281 CG OD1 ND2 REMARK 470 ASN A 283 C O CB CG OD1 ND2 REMARK 470 ILE A 290 CG1 CG2 CD1 REMARK 470 LYS A 293 NZ REMARK 470 ARG A 302 CD NE CZ NH1 NH2 REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 LYS A 342 CG CD CE NZ REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 GLU A 347 OE1 OE2 REMARK 470 SER A 348 OG REMARK 470 ASN A 349 CG OD1 ND2 REMARK 470 ASP A 357 OD1 OD2 REMARK 470 TRP A 364 CE3 CZ2 CZ3 CH2 REMARK 470 PHE A 372 CE1 CE2 CZ REMARK 470 LYS A 375 NZ REMARK 470 LYS A 385 CD CE NZ REMARK 470 HIS A 397 ND1 CD2 CE1 NE2 REMARK 470 LYS A 398 CG CD CE NZ REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 LYS A 408 CD CE NZ REMARK 470 ARG A 420 CZ NH1 NH2 REMARK 470 ARG A 441 CG CD NE CZ NH1 NH2 REMARK 470 MET B 1 N CB CG SD CE REMARK 470 ILE B 2 CG1 CG2 CD1 REMARK 470 ASN B 3 CG OD1 ND2 REMARK 470 ILE B 5 CG1 CG2 CD1 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 ASN B 8 CG OD1 ND2 REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 ARG B 12 CD NE CZ NH1 NH2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 THR B 16 CG2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 GLN B 19 CG CD OE1 NE2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 LYS B 26 CD CE NZ REMARK 470 GLU B 35 CG CD OE1 OE2 REMARK 470 LEU B 39 CG CD1 CD2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 PHE B 47 CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 61 CD1 CD2 REMARK 470 TRP B 65 CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 470 TRP B 65 CH2 REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 68 CD1 CD2 REMARK 470 MET B 69 CG SD CE REMARK 470 LEU B 70 CD1 CD2 REMARK 470 ASN B 77 N CB CG OD1 ND2 REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 ARG B 79 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 80 CG OD1 OD2 REMARK 470 ILE B 81 CG1 CG2 CD1 REMARK 470 SER B 82 OG REMARK 470 GLN B 83 CG CD OE1 NE2 REMARK 470 GLU B 86 CG CD OE1 OE2 REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 ILE B 88 CG1 CG2 CD1 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 90 CD CE NZ REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 97 CD CE NZ REMARK 470 LYS B 98 CD CE NZ REMARK 470 LYS B 100 CE NZ REMARK 470 VAL B 102 CG1 CG2 REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 ILE B 107 CG1 CG2 CD1 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 LEU B 110 CG CD1 CD2 REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -142.49 53.75 REMARK 500 PHE A 299 140.60 174.87 REMARK 500 SER A 323 -159.96 -127.99 REMARK 500 CYS A 361 39.38 -149.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 5WP3 A 75 441 UNP O75530 EED_HUMAN 75 441 DBREF 5WP3 B 1 121 PDB 5WP3 5WP3 1 121 SEQADV 5WP3 GLY A 74 UNP O75530 EXPRESSION TAG SEQRES 1 A 368 GLY SER LYS LYS CYS LYS TYR SER PHE LYS CYS VAL ASN SEQRES 2 A 368 SER LEU LYS GLU ASP HIS ASN GLN PRO LEU PHE GLY VAL SEQRES 3 A 368 GLN PHE ASN TRP HIS SER LYS GLU GLY ASP PRO LEU VAL SEQRES 4 A 368 PHE ALA THR VAL GLY SER ASN ARG VAL THR LEU TYR GLU SEQRES 5 A 368 CYS HIS SER GLN GLY GLU ILE ARG LEU LEU GLN SER TYR SEQRES 6 A 368 VAL ASP ALA ASP ALA ASP GLU ASN PHE TYR THR CYS ALA SEQRES 7 A 368 TRP THR TYR ASP SER ASN THR SER HIS PRO LEU LEU ALA SEQRES 8 A 368 VAL ALA GLY SER ARG GLY ILE ILE ARG ILE ILE ASN PRO SEQRES 9 A 368 ILE THR MET GLN CYS ILE LYS HIS TYR VAL GLY HIS GLY SEQRES 10 A 368 ASN ALA ILE ASN GLU LEU LYS PHE HIS PRO ARG ASP PRO SEQRES 11 A 368 ASN LEU LEU LEU SER VAL SER LYS ASP HIS ALA LEU ARG SEQRES 12 A 368 LEU TRP ASN ILE GLN THR ASP THR LEU VAL ALA ILE PHE SEQRES 13 A 368 GLY GLY VAL GLU GLY HIS ARG ASP GLU VAL LEU SER ALA SEQRES 14 A 368 ASP TYR ASP LEU LEU GLY GLU LYS ILE MET SER CYS GLY SEQRES 15 A 368 MET ASP HIS SER LEU LYS LEU TRP ARG ILE ASN SER LYS SEQRES 16 A 368 ARG MET MET ASN ALA ILE LYS GLU SER TYR ASP TYR ASN SEQRES 17 A 368 PRO ASN LYS THR ASN ARG PRO PHE ILE SER GLN LYS ILE SEQRES 18 A 368 HIS PHE PRO ASP PHE SER THR ARG ASP ILE HIS ARG ASN SEQRES 19 A 368 TYR VAL ASP CYS VAL ARG TRP LEU GLY ASP LEU ILE LEU SEQRES 20 A 368 SER LYS SER CYS GLU ASN ALA ILE VAL CYS TRP LYS PRO SEQRES 21 A 368 GLY LYS MET GLU ASP ASP ILE ASP LYS ILE LYS PRO SER SEQRES 22 A 368 GLU SER ASN VAL THR ILE LEU GLY ARG PHE ASP TYR SER SEQRES 23 A 368 GLN CYS ASP ILE TRP TYR MET ARG PHE SER MET ASP PHE SEQRES 24 A 368 TRP GLN LYS MET LEU ALA LEU GLY ASN GLN VAL GLY LYS SEQRES 25 A 368 LEU TYR VAL TRP ASP LEU GLU VAL GLU ASP PRO HIS LYS SEQRES 26 A 368 ALA LYS CYS THR THR LEU THR HIS HIS LYS CYS GLY ALA SEQRES 27 A 368 ALA ILE ARG GLN THR SER PHE SER ARG ASP SER SER ILE SEQRES 28 A 368 LEU ILE ALA VAL CYS ASP ASP ALA SER ILE TRP ARG TRP SEQRES 29 A 368 ASP ARG LEU ARG SEQRES 1 B 121 MET ILE ASN GLU ILE LYS LYS ASN ALA GLN GLU ARG MET SEQRES 2 B 121 ASP GLU THR VAL GLU GLN LEU LYS ASN GLU LEU SER LYS SEQRES 3 B 121 VAL ARG THR GLY GLY GLY GLY THR GLU GLU ARG ARG LEU SEQRES 4 B 121 GLU LEU ALA LYS GLN VAL VAL PHE ALA ALA ASN ARG ALA SEQRES 5 B 121 LEU ILE ARG VAL ARG THR ILE ALA LEU GLU ALA ALA TRP SEQRES 6 B 121 ARG LEU LEU MET LEU GLY SER ASP LYS GLU VAL ASN LYS SEQRES 7 B 121 ARG ASP ILE SER GLN ALA LEU GLU GLU ILE GLU LYS LEU SEQRES 8 B 121 THR LYS VAL ALA ALA LYS LYS ILE LYS GLU VAL LEU GLU SEQRES 9 B 121 ALA LYS ILE LYS GLU LEU ARG GLU VAL LEU GLU HIS HIS SEQRES 10 B 121 HIS HIS HIS HIS HET UNX A 501 1 HET UNX A 502 1 HET UNX A 503 1 HET UNX A 504 1 HET UNX A 505 1 HET UNX A 506 1 HET UNX A 507 1 HET UNX A 508 1 HET UNX A 509 1 HET UNX A 510 1 HET UNX A 511 1 HET UNX A 512 1 HET UNX A 513 1 HET UNX A 514 1 HET UNX A 515 1 HET UNX B 201 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UNX 16(X) HELIX 1 AA1 SER A 267 TYR A 280 1 14 HELIX 2 AA2 ILE B 2 LYS B 26 1 25 HELIX 3 AA3 THR B 34 MET B 69 1 36 HELIX 4 AA4 LYS B 78 GLU B 112 1 35 SHEET 1 AA1 4 SER A 81 LYS A 89 0 SHEET 2 AA1 4 SER A 433 ARG A 441 -1 O ASP A 438 N LYS A 83 SHEET 3 AA1 4 ILE A 424 CYS A 429 -1 N LEU A 425 O TRP A 437 SHEET 4 AA1 4 ILE A 413 PHE A 418 -1 N SER A 417 O ILE A 426 SHEET 1 AA2 4 GLY A 98 PHE A 101 0 SHEET 2 AA2 4 LEU A 111 GLY A 117 -1 O VAL A 116 N GLY A 98 SHEET 3 AA2 4 ARG A 120 CYS A 126 -1 O CYS A 126 N LEU A 111 SHEET 4 AA2 4 ILE A 132 VAL A 139 -1 O TYR A 138 N VAL A 121 SHEET 1 AA3 4 PHE A 147 TYR A 154 0 SHEET 2 AA3 4 PRO A 161 GLY A 167 -1 O ALA A 164 N ALA A 151 SHEET 3 AA3 4 ILE A 171 ASN A 176 -1 O ILE A 175 N LEU A 163 SHEET 4 AA3 4 GLN A 181 VAL A 187 -1 O TYR A 186 N ILE A 172 SHEET 1 AA4 5 ILE A 193 PHE A 198 0 SHEET 2 AA4 5 LEU A 205 SER A 210 -1 O LEU A 207 N LYS A 197 SHEET 3 AA4 5 LEU A 215 ASN A 219 -1 O TRP A 218 N LEU A 206 SHEET 4 AA4 5 THR A 224 PHE A 229 -1 O PHE A 229 N LEU A 215 SHEET 5 AA4 5 GLN A 292 ILE A 294 1 O GLN A 292 N ILE A 228 SHEET 1 AA5 4 VAL A 239 TYR A 244 0 SHEET 2 AA5 4 LYS A 250 GLY A 255 -1 O MET A 252 N ASP A 243 SHEET 3 AA5 4 LEU A 260 ARG A 264 -1 O TRP A 263 N ILE A 251 SHEET 4 AA5 4 PHE A 299 THR A 301 -1 O PHE A 299 N LEU A 262 SHEET 1 AA6 4 CYS A 311 LEU A 315 0 SHEET 2 AA6 4 LEU A 318 LYS A 322 -1 O LEU A 320 N ARG A 313 SHEET 3 AA6 4 ALA A 327 PRO A 333 -1 O VAL A 329 N SER A 321 SHEET 4 AA6 4 VAL A 350 ASP A 357 -1 O GLY A 354 N CYS A 330 SHEET 1 AA7 3 PHE A 368 MET A 370 0 SHEET 2 AA7 3 MET A 376 GLY A 380 -1 O ALA A 378 N SER A 369 SHEET 3 AA7 3 LEU A 386 ASP A 390 -1 O TYR A 387 N LEU A 379 SSBOND 1 CYS A 78 CYS A 401 1555 1555 2.03 CRYST1 57.070 134.290 61.940 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017522 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016145 0.00000