HEADER TRANSFERASE/INHIBITOR 27-NOV-16 5WQJ TITLE CRYSTAL STRUCTURE OF 3-MERCAPTOPYRUVATE SULFURTRANSFERASE(3MST) IN TITLE 2 COMPLEX WITH COMPOUND1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFURTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MPST, MCG_13337; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.SUWANAI,S.TOMA-FUKAI,T.SHIMIZU REVDAT 1 06-SEP-17 5WQJ 0 JRNL AUTH K.HANAOKA,K.SASAKURA,Y.SUWANAI,S.TOMA-FUKAI,K.SHIMAMOTO, JRNL AUTH 2 Y.TAKANO,N.SHIBUYA,T.TERAI,T.KOMATSU,T.UENO,Y.OGASAWARA, JRNL AUTH 3 Y.TSUCHIYA,Y.WATANABE,H.KIMURA,C.WANG,M.UCHIYAMA,H.KOJIMA, JRNL AUTH 4 T.OKABE,Y.URANO,T.SHIMIZU,T.NAGANO JRNL TITL DISCOVERY AND MECHANISTIC CHARACTERIZATION OF SELECTIVE JRNL TITL 2 INHIBITORS OF H2S-PRODUCING ENZYME: 3-MERCAPTOPYRUVATE JRNL TITL 3 SULFURTRANSFERASE (3MST) TARGETING ACTIVE-SITE CYSTEINE JRNL TITL 4 PERSULFIDE JRNL REF SCI REP V. 7 40227 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28079151 JRNL DOI 10.1038/SREP40227 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 161958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 8342 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 12093 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 614 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.38000 REMARK 3 B22 (A**2) : 0.66000 REMARK 3 B33 (A**2) : -3.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.008 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.008 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.019 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.868 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4973 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4562 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6776 ; 1.850 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10530 ; 0.887 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 622 ; 5.941 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;34.827 ;23.149 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 787 ;12.766 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;16.577 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 690 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5790 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1237 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2433 ; 2.016 ; 1.130 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2430 ; 2.013 ; 1.129 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3072 ; 2.343 ; 1.705 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3073 ; 2.343 ; 1.706 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2540 ; 3.167 ; 1.376 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2541 ; 3.167 ; 1.376 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3705 ; 3.781 ; 1.969 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5749 ; 3.422 ; 9.527 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5750 ; 3.421 ; 9.528 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9535 ; 3.242 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 298 ;17.115 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 9534 ;10.697 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.638 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, -K, H+L REMARK 3 TWIN FRACTION : 0.362 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 170429 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.73600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3,350, HEPES-NAOH, NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 75.18000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 23 REMARK 465 ARG A 24 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 GLN A 297 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 104 O HOH B 401 2.05 REMARK 500 OE2 GLU B 228 NH1 ARG B 231 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 133 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 PHE B 82 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP B 182 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 184 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 293 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 293 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 108 -71.09 -144.18 REMARK 500 CSS A 248 -143.12 -163.43 REMARK 500 SER A 250 10.63 -140.90 REMARK 500 SER A 275 -156.94 63.04 REMARK 500 TYR B 108 -68.34 -142.73 REMARK 500 CSS B 248 -140.24 -160.09 REMARK 500 SER B 250 13.92 -141.05 REMARK 500 ASP B 268 63.75 -115.62 REMARK 500 SER B 275 -160.28 62.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 619 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 620 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 621 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 622 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A 623 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH B 630 DISTANCE = 6.03 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 73 O REMARK 620 2 HIS A 74 O 79.9 REMARK 620 3 SER A 250 O 83.9 101.0 REMARK 620 4 ASP A 273 O 116.6 161.8 89.2 REMARK 620 5 ASP A 273 OD1 151.0 80.0 120.4 81.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 195 O REMARK 620 2 ARG A 197 O 90.3 REMARK 620 3 ILE A 200 O 113.6 87.7 REMARK 620 4 HOH A 572 O 82.0 87.6 163.7 REMARK 620 5 HOH A 517 O 84.5 157.2 74.3 113.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 73 O REMARK 620 2 HIS B 74 O 77.8 REMARK 620 3 SER B 250 O 84.3 99.8 REMARK 620 4 ASP B 273 O 118.0 162.5 90.0 REMARK 620 5 ASP B 273 OD1 149.6 80.9 120.8 81.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 195 O REMARK 620 2 ARG B 197 O 92.9 REMARK 620 3 ILE B 200 O 116.2 86.8 REMARK 620 4 HOH B 559 O 84.7 159.2 75.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 427 O REMARK 620 2 HOH A 510 O 125.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7N3 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7N3 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WQK RELATED DB: PDB DBREF 5WQJ A 1 297 UNP Q505N7 Q505N7_MOUSE 1 297 DBREF 5WQJ B 1 297 UNP Q505N7 Q505N7_MOUSE 1 297 SEQADV 5WQJ SER A 65 UNP Q505N7 CYS 65 ENGINEERED MUTATION SEQADV 5WQJ SER A 255 UNP Q505N7 CYS 255 ENGINEERED MUTATION SEQADV 5WQJ SER A 264 UNP Q505N7 CYS 264 ENGINEERED MUTATION SEQADV 5WQJ SER B 65 UNP Q505N7 CYS 65 ENGINEERED MUTATION SEQADV 5WQJ SER B 255 UNP Q505N7 CYS 255 ENGINEERED MUTATION SEQADV 5WQJ SER B 264 UNP Q505N7 CYS 264 ENGINEERED MUTATION SEQRES 1 A 297 MET ALA ALA PRO GLN LEU PHE ARG ALA LEU VAL SER ALA SEQRES 2 A 297 GLN TRP VAL ALA GLU ALA LEU LYS ALA PRO ARG SER SER SEQRES 3 A 297 GLN PRO LEU LYS LEU LEU ASP ALA SER TRP TYR LEU PRO SEQRES 4 A 297 LYS LEU GLY ARG ASP ALA ARG ARG GLU PHE GLU GLU ARG SEQRES 5 A 297 HIS ILE PRO GLY ALA ALA PHE PHE ASP ILE ASP ARG SER SEQRES 6 A 297 SER ASP HIS THR SER PRO TYR ASP HIS MET LEU PRO ASN SEQRES 7 A 297 ALA THR HIS PHE ALA ASP TYR ALA GLY SER LEU GLY VAL SEQRES 8 A 297 SER ALA ALA THR HIS VAL VAL ILE TYR ASP GLY SER ASP SEQRES 9 A 297 GLN GLY LEU TYR SER ALA PRO ARG VAL TRP TRP MET PHE SEQRES 10 A 297 ARG ALA PHE GLY HIS HIS SER VAL SER LEU LEU ASP GLY SEQRES 11 A 297 GLY PHE ARG HIS TRP LEU ASN GLN ASN LEU PRO ILE SER SEQRES 12 A 297 SER GLY LYS SER HIS SER GLU PRO ALA GLU PHE SER ALA SEQRES 13 A 297 GLN LEU ASP PRO SER PHE ILE LYS THR HIS GLU ASP ILE SEQRES 14 A 297 LEU GLU ASN LEU ASP ALA ARG ARG PHE GLN VAL VAL ASP SEQRES 15 A 297 ALA ARG ALA ALA GLY ARG PHE GLN GLY THR GLN PRO GLU SEQRES 16 A 297 PRO ARG ASP GLY ILE GLU PRO GLY HIS ILE PRO GLY SER SEQRES 17 A 297 VAL ASN ILE PRO PHE THR GLU PHE LEU THR ASN GLU GLY SEQRES 18 A 297 LEU GLU LYS SER PRO GLU GLU ILE LYS ARG LEU PHE LYS SEQRES 19 A 297 GLU LYS LYS VAL ASP LEU SER LYS PRO LEU VAL ALA THR SEQRES 20 A 297 CSS GLY SER GLY VAL THR ALA SER HIS VAL VAL LEU GLY SEQRES 21 A 297 ALA PHE LEU SER GLY LYS SER ASP VAL PRO VAL TYR ASP SEQRES 22 A 297 GLY SER TRP VAL GLU TRP TYR MET ARG ALA GLN PRO GLU SEQRES 23 A 297 HIS ILE ILE SER GLU GLY ARG GLY LYS THR GLN SEQRES 1 B 297 MET ALA ALA PRO GLN LEU PHE ARG ALA LEU VAL SER ALA SEQRES 2 B 297 GLN TRP VAL ALA GLU ALA LEU LYS ALA PRO ARG SER SER SEQRES 3 B 297 GLN PRO LEU LYS LEU LEU ASP ALA SER TRP TYR LEU PRO SEQRES 4 B 297 LYS LEU GLY ARG ASP ALA ARG ARG GLU PHE GLU GLU ARG SEQRES 5 B 297 HIS ILE PRO GLY ALA ALA PHE PHE ASP ILE ASP ARG SER SEQRES 6 B 297 SER ASP HIS THR SER PRO TYR ASP HIS MET LEU PRO ASN SEQRES 7 B 297 ALA THR HIS PHE ALA ASP TYR ALA GLY SER LEU GLY VAL SEQRES 8 B 297 SER ALA ALA THR HIS VAL VAL ILE TYR ASP GLY SER ASP SEQRES 9 B 297 GLN GLY LEU TYR SER ALA PRO ARG VAL TRP TRP MET PHE SEQRES 10 B 297 ARG ALA PHE GLY HIS HIS SER VAL SER LEU LEU ASP GLY SEQRES 11 B 297 GLY PHE ARG HIS TRP LEU ASN GLN ASN LEU PRO ILE SER SEQRES 12 B 297 SER GLY LYS SER HIS SER GLU PRO ALA GLU PHE SER ALA SEQRES 13 B 297 GLN LEU ASP PRO SER PHE ILE LYS THR HIS GLU ASP ILE SEQRES 14 B 297 LEU GLU ASN LEU ASP ALA ARG ARG PHE GLN VAL VAL ASP SEQRES 15 B 297 ALA ARG ALA ALA GLY ARG PHE GLN GLY THR GLN PRO GLU SEQRES 16 B 297 PRO ARG ASP GLY ILE GLU PRO GLY HIS ILE PRO GLY SER SEQRES 17 B 297 VAL ASN ILE PRO PHE THR GLU PHE LEU THR ASN GLU GLY SEQRES 18 B 297 LEU GLU LYS SER PRO GLU GLU ILE LYS ARG LEU PHE LYS SEQRES 19 B 297 GLU LYS LYS VAL ASP LEU SER LYS PRO LEU VAL ALA THR SEQRES 20 B 297 CSS GLY SER GLY VAL THR ALA SER HIS VAL VAL LEU GLY SEQRES 21 B 297 ALA PHE LEU SER GLY LYS SER ASP VAL PRO VAL TYR ASP SEQRES 22 B 297 GLY SER TRP VAL GLU TRP TYR MET ARG ALA GLN PRO GLU SEQRES 23 B 297 HIS ILE ILE SER GLU GLY ARG GLY LYS THR GLN MODRES 5WQJ CSS A 248 CYS MODIFIED RESIDUE MODRES 5WQJ CSS B 248 CYS MODIFIED RESIDUE HET CSS A 248 7 HET CSS B 248 7 HET 7N3 A 301 24 HET NA A 302 1 HET NA A 303 1 HET NA A 304 1 HET 7N3 B 301 24 HET NA B 302 1 HET NA B 303 1 HETNAM CSS S-MERCAPTOCYSTEINE HETNAM 7N3 2-[2-[(4-OXIDANYLIDENE-3~{H}-QUINAZOLIN-2-YL) HETNAM 2 7N3 SULFANYL]ETHANOYLAMINO]THIOPHENE-3-CARBOXAMIDE HETNAM NA SODIUM ION FORMUL 1 CSS 2(C3 H7 N O2 S2) FORMUL 3 7N3 2(C15 H12 N4 O3 S2) FORMUL 4 NA 5(NA 1+) FORMUL 10 HOH *453(H2 O) HELIX 1 AA1 SER A 12 ALA A 22 1 11 HELIX 2 AA2 LEU A 38 GLY A 42 5 5 HELIX 3 AA3 ASP A 44 ARG A 52 1 9 HELIX 4 AA4 ASP A 61 SER A 65 5 5 HELIX 5 AA5 ASN A 78 LEU A 89 1 12 HELIX 6 AA6 SER A 109 PHE A 120 1 12 HELIX 7 AA7 GLY A 130 GLN A 138 1 9 HELIX 8 AA8 ASP A 159 SER A 161 5 3 HELIX 9 AA9 THR A 165 ARG A 176 1 12 HELIX 10 AB1 ALA A 185 GLY A 191 1 7 HELIX 11 AB2 PRO A 212 LEU A 217 5 6 HELIX 12 AB3 SER A 225 LYS A 236 1 12 HELIX 13 AB4 THR A 253 SER A 264 1 12 HELIX 14 AB5 GLY A 274 ALA A 283 1 10 HELIX 15 AB6 GLN A 284 ILE A 288 5 5 HELIX 16 AB7 SER B 12 ALA B 22 1 11 HELIX 17 AB8 LEU B 38 GLY B 42 5 5 HELIX 18 AB9 ASP B 44 ARG B 52 1 9 HELIX 19 AC1 ASP B 61 SER B 65 5 5 HELIX 20 AC2 ASN B 78 LEU B 89 1 12 HELIX 21 AC3 SER B 109 PHE B 120 1 12 HELIX 22 AC4 GLY B 130 GLN B 138 1 9 HELIX 23 AC5 ASP B 159 SER B 161 5 3 HELIX 24 AC6 THR B 165 ARG B 176 1 12 HELIX 25 AC7 ALA B 185 GLY B 191 1 7 HELIX 26 AC8 PRO B 212 LEU B 217 5 6 HELIX 27 AC9 SER B 225 LYS B 236 1 12 HELIX 28 AD1 THR B 253 SER B 264 1 12 HELIX 29 AD2 GLY B 274 ALA B 283 1 10 HELIX 30 AD3 GLN B 284 ILE B 288 5 5 SHEET 1 AA1 5 LEU A 10 VAL A 11 0 SHEET 2 AA1 5 VAL A 125 LEU A 128 1 O LEU A 127 N VAL A 11 SHEET 3 AA1 5 HIS A 96 TYR A 100 1 N VAL A 97 O SER A 126 SHEET 4 AA1 5 LEU A 29 ASP A 33 1 N LYS A 30 O VAL A 98 SHEET 5 AA1 5 ALA A 58 PHE A 59 1 O ALA A 58 N ASP A 33 SHEET 1 AA2 2 ILE A 163 LYS A 164 0 SHEET 2 AA2 2 VAL A 271 TYR A 272 1 O VAL A 271 N LYS A 164 SHEET 1 AA3 3 VAL A 209 ASN A 210 0 SHEET 2 AA3 3 GLN A 179 ASP A 182 1 N ASP A 182 O VAL A 209 SHEET 3 AA3 3 LEU A 244 THR A 247 1 O VAL A 245 N VAL A 181 SHEET 1 AA4 5 LEU B 10 VAL B 11 0 SHEET 2 AA4 5 VAL B 125 LEU B 128 1 O LEU B 127 N VAL B 11 SHEET 3 AA4 5 HIS B 96 TYR B 100 1 N ILE B 99 O SER B 126 SHEET 4 AA4 5 LEU B 29 ASP B 33 1 N LYS B 30 O VAL B 98 SHEET 5 AA4 5 ALA B 58 PHE B 59 1 O ALA B 58 N ASP B 33 SHEET 1 AA5 2 ILE B 163 LYS B 164 0 SHEET 2 AA5 2 VAL B 271 TYR B 272 1 O VAL B 271 N LYS B 164 SHEET 1 AA6 3 VAL B 209 ASN B 210 0 SHEET 2 AA6 3 GLN B 179 ASP B 182 1 N ASP B 182 O VAL B 209 SHEET 3 AA6 3 LEU B 244 THR B 247 1 O VAL B 245 N GLN B 179 LINK O ASP A 73 NA NA A 302 1555 1555 2.60 LINK O HIS A 74 NA NA A 302 1555 1555 2.37 LINK O GLU A 195 NA NA A 303 1555 1555 2.44 LINK O ARG A 197 NA NA A 303 1555 1555 2.41 LINK O ILE A 200 NA NA A 303 1555 1555 2.53 LINK C THR A 247 N CSS A 248 1555 1555 1.33 LINK C CSS A 248 N GLY A 249 1555 1555 1.31 LINK O SER A 250 NA NA A 302 1555 1555 2.23 LINK O ASP A 273 NA NA A 302 1555 1555 2.31 LINK OD1 ASP A 273 NA NA A 302 1555 1555 2.42 LINK O ASP B 73 NA NA B 302 1555 1555 2.67 LINK O HIS B 74 NA NA B 302 1555 1555 2.35 LINK O GLU B 195 NA NA B 303 1555 1555 2.44 LINK O ARG B 197 NA NA B 303 1555 1555 2.51 LINK O ILE B 200 NA NA B 303 1555 1555 2.51 LINK C THR B 247 N CSS B 248 1555 1555 1.33 LINK C CSS B 248 N GLY B 249 1555 1555 1.32 LINK O SER B 250 NA NA B 302 1555 1555 2.24 LINK O ASP B 273 NA NA B 302 1555 1555 2.33 LINK OD1 ASP B 273 NA NA B 302 1555 1555 2.42 LINK NA NA A 303 O HOH A 572 1555 1555 2.44 LINK NA NA A 303 O HOH A 517 1555 1555 2.52 LINK NA NA A 304 O HOH A 427 1555 1555 3.16 LINK NA NA A 304 O HOH A 510 1555 1555 3.16 LINK NA NA B 303 O HOH B 559 1555 1555 2.46 SITE 1 AC1 17 TRP A 36 PRO A 39 ASP A 73 HIS A 74 SITE 2 AC1 17 TYR A 108 ARG A 188 PRO A 196 ARG A 197 SITE 3 AC1 17 CSS A 248 GLY A 249 SER A 250 VAL A 252 SITE 4 AC1 17 THR A 253 HOH A 413 HOH A 420 HOH A 458 SITE 5 AC1 17 HOH A 528 SITE 1 AC2 5 ASP A 73 HIS A 74 MET A 75 SER A 250 SITE 2 AC2 5 ASP A 273 SITE 1 AC3 5 GLU A 195 ARG A 197 ILE A 200 HOH A 517 SITE 2 AC3 5 HOH A 572 SITE 1 AC4 2 ARG A 46 SER A 147 SITE 1 AC5 16 TRP B 36 PRO B 39 ASP B 73 HIS B 74 SITE 2 AC5 16 TYR B 108 ARG B 188 PRO B 196 ARG B 197 SITE 3 AC5 16 CSS B 248 GLY B 249 SER B 250 VAL B 252 SITE 4 AC5 16 HOH B 435 HOH B 441 HOH B 467 HOH B 512 SITE 1 AC6 5 ASP B 73 HIS B 74 MET B 75 SER B 250 SITE 2 AC6 5 ASP B 273 SITE 1 AC7 4 GLU B 195 ARG B 197 ILE B 200 HOH B 559 CRYST1 37.355 150.360 54.307 90.00 110.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026770 0.000000 0.009791 0.00000 SCALE2 0.000000 0.006651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019607 0.00000