HEADER SIGNALING PROTEIN 28-NOV-16 5WQT TITLE STRUCTURE OF A PROTEIN INVOLVED IN PYROPTOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GASDERMIN-D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL (UNP RESIDUES 276-484); COMPND 5 SYNONYM: GASDERMIN DOMAIN-CONTAINING PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GSDMD, DFNA5L, GSDMDC1, FKSG10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PYRTOSIS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KUANG,J.LI REVDAT 6 06-NOV-24 5WQT 1 REMARK REVDAT 5 15-NOV-23 5WQT 1 REMARK REVDAT 4 08-NOV-23 5WQT 1 REMARK REVDAT 3 07-FEB-18 5WQT 1 REMARK REVDAT 2 06-DEC-17 5WQT 1 JRNL REVDAT 1 04-OCT-17 5WQT 0 JRNL AUTH S.KUANG,J.ZHENG,H.YANG,S.LI,S.DUAN,Y.SHEN,C.JI,J.GAN,X.W.XU, JRNL AUTH 2 J.LI JRNL TITL STRUCTURE INSIGHT OF GSDMD REVEALS THE BASIS OF GSDMD JRNL TITL 2 AUTOINHIBITION IN CELL PYROPTOSIS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 10642 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28928145 JRNL DOI 10.1073/PNAS.1708194114 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 13276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 708 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 932 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2877 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.70000 REMARK 3 B22 (A**2) : 2.77000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.912 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.364 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.304 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2961 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2871 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4034 ; 1.417 ; 2.031 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6632 ; 0.961 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 391 ; 6.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;40.183 ;26.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 444 ;16.137 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.319 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 489 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3324 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 542 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1579 ; 2.542 ; 5.063 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1578 ; 2.527 ; 5.061 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1965 ; 4.193 ; 7.575 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1966 ; 4.193 ; 7.578 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1382 ; 2.591 ; 5.334 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1380 ; 2.585 ; 5.328 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2069 ; 4.341 ; 7.895 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3140 ; 7.051 ;39.137 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3141 ; 7.051 ;39.155 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-16. REMARK 100 THE DEPOSITION ID IS D_1300002206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 68.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.19400 REMARK 200 R SYM (I) : 0.19400 REMARK 200 FOR THE DATA SET : 13.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.69400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5B5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM SODIUM BROMIDE, 0.1M HEPES SODIUM REMARK 280 PH7.0, 1.5M SODIUM CITRATE TRIBASIC DIHYDRATE, EVAPORATION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.94300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.07250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.08250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.07250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.94300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.08250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLN A 60 REMARK 465 GLY A 61 REMARK 465 GLN A 62 REMARK 465 SER A 63 REMARK 465 LEU A 64 REMARK 465 GLY A 65 REMARK 465 PRO A 66 REMARK 465 VAL A 67 REMARK 465 PRO A 208 REMARK 465 HIS A 209 REMARK 465 GLY B 1 REMARK 465 ALA B 4 REMARK 465 GLN B 60 REMARK 465 GLY B 61 REMARK 465 GLN B 62 REMARK 465 SER B 63 REMARK 465 LEU B 64 REMARK 465 GLY B 65 REMARK 465 PRO B 66 REMARK 465 PRO B 208 REMARK 465 HIS B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 LEU A 28 CG CD1 CD2 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LEU A 83 CG CD1 CD2 REMARK 470 SER A 85 OG REMARK 470 LEU A 88 CG CD1 CD2 REMARK 470 TYR A 98 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 LEU B 28 CG CD1 CD2 REMARK 470 ASP B 30 CG OD1 OD2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 VAL B 67 CG1 CG2 REMARK 470 LEU B 83 CG CD1 CD2 REMARK 470 SER B 84 OG REMARK 470 MSE B 87 CG SE CE REMARK 470 LEU B 88 CG CD1 CD2 REMARK 470 TYR B 98 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 40.10 -101.40 REMARK 500 MSE A 87 63.77 70.19 REMARK 500 PRO A 90 -38.54 -38.27 REMARK 500 SER B 84 51.25 -101.68 REMARK 500 SER B 85 -61.94 -94.46 REMARK 500 GLN B 206 76.18 53.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 205 GLN A 206 -37.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 305 DBREF 5WQT A 1 209 UNP P57764 GSDMD_HUMAN 276 484 DBREF 5WQT B 1 209 UNP P57764 GSDMD_HUMAN 276 484 SEQRES 1 A 209 GLY VAL PRO ALA GLU GLY ALA PHE THR GLU ASP PHE GLN SEQRES 2 A 209 GLY LEU ARG ALA GLU VAL GLU THR ILE SER LYS GLU LEU SEQRES 3 A 209 GLU LEU LEU ASP ARG GLU LEU CYS GLN LEU LEU LEU GLU SEQRES 4 A 209 GLY LEU GLU GLY VAL LEU ARG ASP GLN LEU ALA LEU ARG SEQRES 5 A 209 ALA LEU GLU GLU ALA LEU GLU GLN GLY GLN SER LEU GLY SEQRES 6 A 209 PRO VAL GLU PRO LEU ASP GLY PRO ALA GLY ALA VAL LEU SEQRES 7 A 209 GLU CYS LEU VAL LEU SER SER GLY MSE LEU VAL PRO GLU SEQRES 8 A 209 LEU ALA ILE PRO VAL VAL TYR LEU LEU GLY ALA LEU THR SEQRES 9 A 209 MSE LEU SER GLU THR GLN HIS LYS LEU LEU ALA GLU ALA SEQRES 10 A 209 LEU GLU SER GLN THR LEU LEU GLY PRO LEU GLU LEU VAL SEQRES 11 A 209 GLY SER LEU LEU GLU GLN SER ALA PRO TRP GLN GLU ARG SEQRES 12 A 209 SER THR MSE SER LEU PRO PRO GLY LEU LEU GLY ASN SER SEQRES 13 A 209 TRP GLY GLU GLY ALA PRO ALA TRP VAL LEU LEU ASP GLU SEQRES 14 A 209 CYS GLY LEU GLU LEU GLY GLU ASP THR PRO HIS VAL CYS SEQRES 15 A 209 TRP GLU PRO GLN ALA GLN GLY ARG MSE CYS ALA LEU TYR SEQRES 16 A 209 ALA SER LEU ALA LEU LEU SER GLY LEU SER GLN GLU PRO SEQRES 17 A 209 HIS SEQRES 1 B 209 GLY VAL PRO ALA GLU GLY ALA PHE THR GLU ASP PHE GLN SEQRES 2 B 209 GLY LEU ARG ALA GLU VAL GLU THR ILE SER LYS GLU LEU SEQRES 3 B 209 GLU LEU LEU ASP ARG GLU LEU CYS GLN LEU LEU LEU GLU SEQRES 4 B 209 GLY LEU GLU GLY VAL LEU ARG ASP GLN LEU ALA LEU ARG SEQRES 5 B 209 ALA LEU GLU GLU ALA LEU GLU GLN GLY GLN SER LEU GLY SEQRES 6 B 209 PRO VAL GLU PRO LEU ASP GLY PRO ALA GLY ALA VAL LEU SEQRES 7 B 209 GLU CYS LEU VAL LEU SER SER GLY MSE LEU VAL PRO GLU SEQRES 8 B 209 LEU ALA ILE PRO VAL VAL TYR LEU LEU GLY ALA LEU THR SEQRES 9 B 209 MSE LEU SER GLU THR GLN HIS LYS LEU LEU ALA GLU ALA SEQRES 10 B 209 LEU GLU SER GLN THR LEU LEU GLY PRO LEU GLU LEU VAL SEQRES 11 B 209 GLY SER LEU LEU GLU GLN SER ALA PRO TRP GLN GLU ARG SEQRES 12 B 209 SER THR MSE SER LEU PRO PRO GLY LEU LEU GLY ASN SER SEQRES 13 B 209 TRP GLY GLU GLY ALA PRO ALA TRP VAL LEU LEU ASP GLU SEQRES 14 B 209 CYS GLY LEU GLU LEU GLY GLU ASP THR PRO HIS VAL CYS SEQRES 15 B 209 TRP GLU PRO GLN ALA GLN GLY ARG MSE CYS ALA LEU TYR SEQRES 16 B 209 ALA SER LEU ALA LEU LEU SER GLY LEU SER GLN GLU PRO SEQRES 17 B 209 HIS MODRES 5WQT MSE A 87 MET MODIFIED RESIDUE MODRES 5WQT MSE A 105 MET MODIFIED RESIDUE MODRES 5WQT MSE A 146 MET MODIFIED RESIDUE MODRES 5WQT MSE A 191 MET MODIFIED RESIDUE MODRES 5WQT MSE B 105 MET MODIFIED RESIDUE MODRES 5WQT MSE B 146 MET MODIFIED RESIDUE MODRES 5WQT MSE B 191 MET MODIFIED RESIDUE HET MSE A 87 8 HET MSE A 105 8 HET MSE A 146 8 HET MSE A 191 8 HET MSE B 87 5 HET MSE B 105 8 HET MSE B 146 8 HET MSE B 191 8 HET GOL A 301 6 HET GOL A 302 6 HET GOL A 303 6 HET CIT A 304 13 HET CIT A 305 13 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM CIT CITRIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 CIT 2(C6 H8 O7) FORMUL 8 HOH *38(H2 O) HELIX 1 AA1 ASP A 11 LEU A 28 1 18 HELIX 2 AA2 ASP A 30 LEU A 45 1 16 HELIX 3 AA3 ASP A 47 LEU A 58 1 12 HELIX 4 AA4 ASP A 71 CYS A 80 1 10 HELIX 5 AA5 VAL A 89 THR A 104 1 16 HELIX 6 AA6 SER A 107 SER A 120 1 14 HELIX 7 AA7 LEU A 123 SER A 137 1 15 HELIX 8 AA8 PRO A 149 GLY A 154 5 6 HELIX 9 AA9 ALA A 161 GLY A 171 1 11 HELIX 10 AB1 GLU A 184 GLN A 186 5 3 HELIX 11 AB2 ALA A 187 SER A 205 1 19 HELIX 12 AB3 ASP B 11 LEU B 28 1 18 HELIX 13 AB4 ASP B 30 ARG B 46 1 17 HELIX 14 AB5 ASP B 47 GLU B 59 1 13 HELIX 15 AB6 ASP B 71 GLU B 79 1 9 HELIX 16 AB7 VAL B 89 THR B 104 1 16 HELIX 17 AB8 SER B 107 GLN B 121 1 15 HELIX 18 AB9 LEU B 123 ALA B 138 1 16 HELIX 19 AC1 PRO B 149 GLY B 154 5 6 HELIX 20 AC2 ALA B 161 GLY B 171 1 11 HELIX 21 AC3 GLU B 184 GLN B 186 5 3 HELIX 22 AC4 ALA B 187 GLN B 206 1 20 SHEET 1 AA1 3 SER A 144 MSE A 146 0 SHEET 2 AA1 3 VAL A 181 TRP A 183 -1 O TRP A 183 N SER A 144 SHEET 3 AA1 3 GLU A 173 LEU A 174 -1 N GLU A 173 O CYS A 182 SHEET 1 AA2 3 SER B 144 MSE B 146 0 SHEET 2 AA2 3 VAL B 181 TRP B 183 -1 O TRP B 183 N SER B 144 SHEET 3 AA2 3 GLU B 173 LEU B 174 -1 N GLU B 173 O CYS B 182 LINK C GLY A 86 N MSE A 87 1555 1555 1.34 LINK C MSE A 87 N LEU A 88 1555 1555 1.33 LINK C THR A 104 N MSE A 105 1555 1555 1.33 LINK C MSE A 105 N LEU A 106 1555 1555 1.34 LINK C THR A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N SER A 147 1555 1555 1.33 LINK C ARG A 190 N MSE A 191 1555 1555 1.32 LINK C MSE A 191 N CYS A 192 1555 1555 1.34 LINK C GLY B 86 N MSE B 87 1555 1555 1.33 LINK C MSE B 87 N LEU B 88 1555 1555 1.33 LINK C THR B 104 N MSE B 105 1555 1555 1.34 LINK C MSE B 105 N LEU B 106 1555 1555 1.33 LINK C THR B 145 N MSE B 146 1555 1555 1.34 LINK C MSE B 146 N SER B 147 1555 1555 1.34 LINK C ARG B 190 N MSE B 191 1555 1555 1.33 LINK C MSE B 191 N CYS B 192 1555 1555 1.34 CISPEP 1 SER A 84 SER A 85 0 -3.28 CISPEP 2 GLY A 86 MSE A 87 0 -0.66 CISPEP 3 ALA A 138 PRO A 139 0 -3.85 CISPEP 4 THR A 178 PRO A 179 0 -8.10 CISPEP 5 GLN A 206 GLU A 207 0 7.65 CISPEP 6 LEU B 83 SER B 84 0 -9.66 CISPEP 7 SER B 85 GLY B 86 0 0.24 CISPEP 8 ALA B 138 PRO B 139 0 -1.78 CISPEP 9 THR B 178 PRO B 179 0 -7.60 CISPEP 10 GLN B 206 GLU B 207 0 -10.24 SITE 1 AC1 3 GLY A 86 MSE A 87 HOH A 404 SITE 1 AC2 4 LEU A 58 MSE A 146 THR A 178 PRO A 179 SITE 1 AC3 6 LEU A 49 ARG A 52 ALA A 53 GLU A 56 SITE 2 AC3 6 GLU B 5 GLY B 6 SITE 1 AC4 8 LEU A 49 ALA A 50 ALA A 53 LEU A 70 SITE 2 AC4 8 ASP A 71 CIT A 305 HOH A 406 GLY B 6 SITE 1 AC5 5 ASP A 71 CIT A 304 HOH A 406 GLU B 10 SITE 2 AC5 5 GLU B 18 CRYST1 47.886 86.165 112.145 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008917 0.00000