HEADER TRANSFERASE 09-DEC-16 5WT4 TITLE L-CYSTEINE-PLP INTERMEDIATE OF NIFS FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE ISCS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYSTEINE DESULFURASE NIFS; COMPND 5 EC: 2.8.1.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_TAXID: 85962; SOURCE 5 STRAIN: ATCC 700392 / 26695; SOURCE 6 GENE: ISCS, HP_0220; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS IRON-SULFUR CLUSTER BIOGENESIS, CYSTEINE DESULFURASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO,R.NAKAMURA,T.TAKAHASHI REVDAT 4 08-NOV-23 5WT4 1 REMARK REVDAT 3 20-NOV-19 5WT4 1 JRNL REVDAT 2 16-OCT-19 5WT4 1 JRNL REVDAT 1 13-DEC-17 5WT4 0 JRNL AUTH R.NAKAMURA,M.HIKITA,S.OGAWA,Y.TAKAHASHI,T.FUJISHIRO JRNL TITL SNAPSHOTS OF PLP-SUBSTRATE AND PLP-PRODUCT EXTERNAL JRNL TITL 2 ALDIMINES AS INTERMEDIATES IN TWO TYPES OF CYSTEINE JRNL TITL 3 DESULFURASE ENZYMES. JRNL REF FEBS J. 2019 JRNL REFN ISSN 1742-464X JRNL PMID 31587510 JRNL DOI 10.1111/FEBS.15081 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 15900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.269 REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1299 - 5.3041 1.00 2739 145 0.2128 0.2134 REMARK 3 2 5.3041 - 4.2108 1.00 2564 135 0.2175 0.2276 REMARK 3 3 4.2108 - 3.6788 0.95 2433 128 0.3048 0.3600 REMARK 3 4 3.6788 - 3.3425 0.93 2360 124 0.3838 0.4609 REMARK 3 5 3.3425 - 3.1030 1.00 2510 131 0.3212 0.3759 REMARK 3 6 3.1030 - 2.9201 1.00 2497 132 0.2954 0.3027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2850 REMARK 3 ANGLE : 1.550 3860 REMARK 3 CHIRALITY : 0.095 446 REMARK 3 PLANARITY : 0.011 496 REMARK 3 DIHEDRAL : 21.627 1719 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4783 -30.5671 -3.6831 REMARK 3 T TENSOR REMARK 3 T11: 0.2687 T22: 0.4739 REMARK 3 T33: 0.5098 T12: 0.0915 REMARK 3 T13: 0.0671 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 2.6701 L22: 4.0586 REMARK 3 L33: 5.5216 L12: 1.1847 REMARK 3 L13: 0.0693 L23: -0.2405 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: 0.7230 S13: -0.5168 REMARK 3 S21: 0.2669 S22: -0.0089 S23: -0.1557 REMARK 3 S31: 0.4111 S32: 0.3966 S33: 0.1385 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7315 -8.9524 -16.5104 REMARK 3 T TENSOR REMARK 3 T11: 0.7985 T22: 1.4338 REMARK 3 T33: 0.8788 T12: -0.4572 REMARK 3 T13: -0.0284 T23: 0.3909 REMARK 3 L TENSOR REMARK 3 L11: 8.0776 L22: 3.7620 REMARK 3 L33: 0.1849 L12: 1.1329 REMARK 3 L13: 0.0131 L23: 0.0178 REMARK 3 S TENSOR REMARK 3 S11: -0.1775 S12: 1.3346 S13: -0.1832 REMARK 3 S21: -0.4978 S22: 0.1488 S23: -0.2780 REMARK 3 S31: -0.9694 S32: 1.0289 S33: -0.2168 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 243 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9495 -22.3264 -13.6335 REMARK 3 T TENSOR REMARK 3 T11: 0.3538 T22: 1.2321 REMARK 3 T33: 0.6441 T12: -0.0613 REMARK 3 T13: 0.1250 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 3.9200 L22: 3.4372 REMARK 3 L33: 3.6877 L12: 0.6383 REMARK 3 L13: -1.5949 L23: 0.2555 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: 1.3962 S13: -0.1925 REMARK 3 S21: -0.2697 S22: 0.1640 S23: -0.5341 REMARK 3 S31: -0.3010 S32: 1.1369 S33: -0.0949 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 244 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0635 -24.9642 -26.0196 REMARK 3 T TENSOR REMARK 3 T11: 0.7223 T22: 1.4294 REMARK 3 T33: 0.5579 T12: 0.0019 REMARK 3 T13: -0.0498 T23: -0.0575 REMARK 3 L TENSOR REMARK 3 L11: 3.9607 L22: 3.9755 REMARK 3 L33: 5.6035 L12: -1.0472 REMARK 3 L13: 1.4568 L23: -1.0902 REMARK 3 S TENSOR REMARK 3 S11: 0.0179 S12: 1.9537 S13: 0.1749 REMARK 3 S21: -1.5114 S22: -0.2918 S23: 0.1119 REMARK 3 S31: 0.2701 S32: 0.0556 S33: 0.2151 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 363 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.1216 -20.5474 -33.4765 REMARK 3 T TENSOR REMARK 3 T11: 1.2307 T22: 2.3693 REMARK 3 T33: 0.1306 T12: -0.2373 REMARK 3 T13: -0.5588 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 6.8988 L22: 9.6469 REMARK 3 L33: 2.9205 L12: -3.6970 REMARK 3 L13: -1.6835 L23: 4.0118 REMARK 3 S TENSOR REMARK 3 S11: 0.9835 S12: 1.9602 S13: 1.9703 REMARK 3 S21: -2.6501 S22: 0.0197 S23: 1.3783 REMARK 3 S31: -0.9892 S32: -0.3766 S33: 0.0140 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WT4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16036 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.10820 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 0.92360 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1ECX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES/NAOH, PEG4000, GLYCEROL, REMARK 280 ISOPROPANOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.81000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.58500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.40500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.58500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.21500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.58500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.40500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.58500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.58500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 100.21500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 326 REMARK 465 ALA A 327 REMARK 465 CYS A 328 REMARK 465 ALA A 329 REMARK 465 SER A 330 REMARK 465 GLU A 331 REMARK 465 ASP A 332 REMARK 465 LEU A 333 REMARK 465 GLU A 334 REMARK 465 ALA A 335 REMARK 465 ASN A 336 REMARK 465 PRO A 337 REMARK 465 VAL A 338 REMARK 465 MET A 339 REMARK 465 VAL A 340 REMARK 465 ALA A 341 REMARK 465 ILE A 342 REMARK 465 GLY A 343 REMARK 465 ALA A 344 REMARK 465 SER A 345 REMARK 465 LYS A 346 REMARK 465 GLU A 347 REMARK 465 LEU A 348 REMARK 465 ALA A 349 REMARK 465 HIS A 350 REMARK 465 SER A 385 REMARK 465 SER A 386 REMARK 465 TYR A 387 REMARK 465 VAL A 388 REMARK 465 ASP A 389 REMARK 465 LEU A 390 REMARK 465 VAL A 391 REMARK 465 PRO A 392 REMARK 465 ARG A 393 REMARK 465 GLY A 394 REMARK 465 SER A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 28 -100.75 -112.62 REMARK 500 HIS A 30 66.21 -106.53 REMARK 500 CYS A 72 169.20 173.06 REMARK 500 ASN A 95 41.83 -86.84 REMARK 500 GLU A 143 5.54 -69.40 REMARK 500 LEU A 224 105.25 -164.56 REMARK 500 ASP A 284 57.41 10.28 REMARK 500 MET A 286 135.97 -179.84 REMARK 500 ARG A 304 -109.63 -38.48 REMARK 500 ASN A 382 72.40 -41.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 305 17.45 REMARK 500 ILE A 306 -12.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C6P A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WT2 RELATED DB: PDB REMARK 900 RELATED ID: 5WT5 RELATED DB: PDB REMARK 900 RELATED ID: 5WT6 RELATED DB: PDB DBREF 5WT4 A 1 387 UNP O25008 ISCS_HELPY 1 387 SEQADV 5WT4 VAL A 2 UNP O25008 LEU 2 ENGINEERED MUTATION SEQADV 5WT4 ARG A 138 UNP O25008 LYS 138 ENGINEERED MUTATION SEQADV 5WT4 VAL A 388 UNP O25008 EXPRESSION TAG SEQADV 5WT4 ASP A 389 UNP O25008 EXPRESSION TAG SEQADV 5WT4 LEU A 390 UNP O25008 EXPRESSION TAG SEQADV 5WT4 VAL A 391 UNP O25008 EXPRESSION TAG SEQADV 5WT4 PRO A 392 UNP O25008 EXPRESSION TAG SEQADV 5WT4 ARG A 393 UNP O25008 EXPRESSION TAG SEQADV 5WT4 GLY A 394 UNP O25008 EXPRESSION TAG SEQADV 5WT4 SER A 395 UNP O25008 EXPRESSION TAG SEQADV 5WT4 HIS A 396 UNP O25008 EXPRESSION TAG SEQADV 5WT4 HIS A 397 UNP O25008 EXPRESSION TAG SEQADV 5WT4 HIS A 398 UNP O25008 EXPRESSION TAG SEQADV 5WT4 HIS A 399 UNP O25008 EXPRESSION TAG SEQADV 5WT4 HIS A 400 UNP O25008 EXPRESSION TAG SEQADV 5WT4 HIS A 401 UNP O25008 EXPRESSION TAG SEQRES 1 A 401 MET VAL GLN ARG ILE TYR LEU ASP ASN ASN ALA THR THR SEQRES 2 A 401 ARG ILE ASP PRO LYS VAL LYS GLU ILE MET ASP PRO PHE SEQRES 3 A 401 LEU ARG ASP HIS TYR GLY ASN PRO SER SER LEU HIS GLN SEQRES 4 A 401 PHE GLY THR GLU THR HIS PRO ALA ILE ALA GLU ALA LEU SEQRES 5 A 401 ASP LYS LEU TYR LYS GLY ILE ASN ALA ARG ASP ILE ASP SEQRES 6 A 401 ASP VAL ILE ILE THR SER CYS ALA THR GLU SER ASN ASN SEQRES 7 A 401 TRP VAL LEU LYS GLY VAL TYR PHE ASP GLU CYS LEU LYS SEQRES 8 A 401 LYS GLY LYS ASN HIS ILE VAL THR THR VAL ALA GLU HIS SEQRES 9 A 401 PRO ALA VAL ARG SER THR CYS ASN PHE LEU GLU SER LEU SEQRES 10 A 401 GLY VAL GLU VAL THR TYR LEU PRO ILE ASN GLU HIS GLY SEQRES 11 A 401 SER ILE THR ALA GLU GLN VAL ARG GLU ALA ILE THR GLU SEQRES 12 A 401 LYS THR ALA LEU VAL SER VAL MET TRP ALA ASN ASN GLU SEQRES 13 A 401 THR GLY LEU ILE PHE PRO ILE GLU GLU ILE GLY ALA ILE SEQRES 14 A 401 CYS LYS GLU LYS GLY VAL LEU PHE HIS THR ASP ALA VAL SEQRES 15 A 401 GLN ALA ILE GLY LYS ILE PRO VAL ASP VAL LEU LYS ALA SEQRES 16 A 401 ASN ALA ASP PHE LEU SER PHE SER ALA HIS LYS PHE HIS SEQRES 17 A 401 GLY PRO LYS GLY ILE GLY GLY LEU TYR ILE ARG SER GLY SEQRES 18 A 401 VAL GLY LEU THR PRO LEU PHE HIS GLY GLY GLU HIS MET SEQRES 19 A 401 ASN GLY ARG ARG SER GLY THR LEU ASN VAL PRO TYR ILE SEQRES 20 A 401 VAL GLY MET GLY GLU ALA MET LYS LEU ALA VAL GLU HIS SEQRES 21 A 401 LEU ASP TYR GLU LYS GLU VAL VAL GLY LYS LEU ARG ASP SEQRES 22 A 401 LYS LEU GLU GLU ALA LEU LEU LYS ILE PRO ASP VAL MET SEQRES 23 A 401 VAL VAL GLY ASP ARG ILE HIS ARG VAL PRO ASN THR THR SEQRES 24 A 401 LEU VAL SER VAL ARG GLY ILE GLU GLY GLU ALA MET LEU SEQRES 25 A 401 TRP ASP LEU ASN ARG SER ASN ILE ALA ALA SER THR GLY SEQRES 26 A 401 SER ALA CYS ALA SER GLU ASP LEU GLU ALA ASN PRO VAL SEQRES 27 A 401 MET VAL ALA ILE GLY ALA SER LYS GLU LEU ALA HIS THR SEQRES 28 A 401 ALA ILE ARG LEU SER LEU SER ARG PHE ASN THR GLU ALA SEQRES 29 A 401 GLU ILE ASP LYS THR ILE GLU VAL PHE SER GLN ALA ALA SEQRES 30 A 401 VAL ARG LEU ARG ASN ILE SER SER SER TYR VAL ASP LEU SEQRES 31 A 401 VAL PRO ARG GLY SER HIS HIS HIS HIS HIS HIS HET IPA A 501 4 HET C6P A 502 22 HETNAM IPA ISOPROPYL ALCOHOL HETNAM C6P N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN- HETNAM 2 C6P 4-YL}METHYL)-L-CYSTEINE HETSYN IPA 2-PROPANOL HETSYN C6P 4-((1-CARBOXY-2-THIOL-ETHYLAMINO)-METHYL)-3-HYDROXY-2- HETSYN 2 C6P METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM FORMUL 2 IPA C3 H8 O FORMUL 3 C6P C11 H17 N2 O7 P S FORMUL 4 HOH *9(H2 O) HELIX 1 AA1 ASP A 16 ARG A 28 1 13 HELIX 2 AA2 HIS A 38 GLU A 43 1 6 HELIX 3 AA3 THR A 44 ILE A 59 1 16 HELIX 4 AA4 CYS A 72 CYS A 89 1 18 HELIX 5 AA5 HIS A 104 LEU A 117 1 14 HELIX 6 AA6 THR A 133 ILE A 141 1 9 HELIX 7 AA7 PRO A 162 GLY A 174 1 13 HELIX 8 AA8 ASP A 191 ASN A 196 1 6 HELIX 9 AA9 HIS A 205 PHE A 207 5 3 HELIX 10 AB1 ASN A 243 HIS A 260 1 18 HELIX 11 AB2 HIS A 260 VAL A 267 1 8 HELIX 12 AB3 VAL A 267 LEU A 280 1 14 HELIX 13 AB4 GLU A 307 SER A 318 1 12 HELIX 14 AB5 THR A 362 ASN A 382 1 21 SHEET 1 AA1 2 ILE A 5 TYR A 6 0 SHEET 2 AA1 2 ILE A 320 ALA A 321 1 O ALA A 321 N ILE A 5 SHEET 1 AA2 7 ASP A 66 THR A 70 0 SHEET 2 AA2 7 GLY A 214 ILE A 218 -1 O ILE A 218 N ASP A 66 SHEET 3 AA2 7 PHE A 199 SER A 203 -1 N PHE A 202 O GLY A 215 SHEET 4 AA2 7 LEU A 176 ASP A 180 1 N PHE A 177 O PHE A 199 SHEET 5 AA2 7 THR A 145 SER A 149 1 N VAL A 148 O HIS A 178 SHEET 6 AA2 7 HIS A 96 THR A 100 1 N HIS A 96 O ALA A 146 SHEET 7 AA2 7 GLU A 120 LEU A 124 1 O LEU A 124 N THR A 99 SHEET 1 AA3 4 MET A 286 VAL A 287 0 SHEET 2 AA3 4 THR A 298 SER A 302 -1 O SER A 302 N MET A 286 SHEET 3 AA3 4 ILE A 353 SER A 356 -1 O LEU A 355 N THR A 299 SHEET 4 AA3 4 SER A 323 THR A 324 -1 N SER A 323 O ARG A 354 SITE 1 AC1 3 TYR A 56 VAL A 67 ASN A 235 SITE 1 AC2 14 CYS A 72 ALA A 73 THR A 74 HIS A 104 SITE 2 AC2 14 ASN A 155 ASP A 180 GLN A 183 SER A 203 SITE 3 AC2 14 HIS A 205 LYS A 206 GLY A 240 THR A 241 SITE 4 AC2 14 ARG A 354 HOH A 601 CRYST1 103.170 103.170 133.620 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009693 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007484 0.00000