HEADER IMMUNE SYSTEM 11-DEC-16 5WTG TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ANTI-HAV ANTIBODY R10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: FAB HEAVY CHAIN; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090 KEYWDS HAV, NEUTRALIZING MECHANISM, RECEPTOR RECOGNITION, VIRAL ENTRY, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,L.ZHU,M.DANG,Z.HU,Q.GAO,S.YUAN,Y.SUN,B.ZHANG,J.REN,T.S.WALTER, AUTHOR 2 J.WANG,E.E.FRY,D.I.STUART,Z.RAO REVDAT 5 23-OCT-24 5WTG 1 REMARK REVDAT 4 08-NOV-23 5WTG 1 REMARK REVDAT 3 30-AUG-17 5WTG 1 REMARK REVDAT 2 08-FEB-17 5WTG 1 JRNL REVDAT 1 25-JAN-17 5WTG 0 JRNL AUTH X.WANG,L.ZHU,M.DANG,Z.HU,Q.GAO,S.YUAN,Y.SUN,B.ZHANG,J.REN, JRNL AUTH 2 A.KOTECHA,T.S.WALTER,J.WANG,E.E.FRY,D.I.STUART,Z.RAO JRNL TITL POTENT NEUTRALIZATION OF HEPATITIS A VIRUS REVEALS A JRNL TITL 2 RECEPTOR MIMIC MECHANISM AND THE RECEPTOR RECOGNITION SITE JRNL REF PROC. NATL. ACAD. SCI. V. 114 770 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28074040 JRNL DOI 10.1073/PNAS.1616502114 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 20063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2393 - 5.5587 0.99 2804 153 0.1761 0.2335 REMARK 3 2 5.5587 - 4.4130 0.99 2755 167 0.1524 0.2059 REMARK 3 3 4.4130 - 3.8555 0.99 2768 140 0.1692 0.2410 REMARK 3 4 3.8555 - 3.5030 0.98 2733 131 0.1956 0.2841 REMARK 3 5 3.5030 - 3.2520 0.98 2752 121 0.2270 0.2940 REMARK 3 6 3.2520 - 3.0603 0.97 2705 142 0.2543 0.3289 REMARK 3 7 3.0603 - 2.9071 0.91 2562 130 0.2820 0.3494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6705 REMARK 3 ANGLE : 1.175 9138 REMARK 3 CHIRALITY : 0.058 1020 REMARK 3 PLANARITY : 0.007 1151 REMARK 3 DIHEDRAL : 17.052 3974 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20094 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EJO REMARK 200 REMARK 200 REMARK: CUBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M SODIUM THIOCYANATE, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 70.26100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 136 REMARK 465 ALA B 137 REMARK 465 SER B 138 REMARK 465 THR B 139 REMARK 465 SER D 136 REMARK 465 ALA D 137 REMARK 465 SER D 138 REMARK 465 THR D 139 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 1 CG OD1 OD2 REMARK 470 ARG B 221 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 221 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 89 O ASN A 93 1.65 REMARK 500 OD1 ASP C 49 CG2 THR D 102 1.94 REMARK 500 ND2 ASN D 204 OD1 ASP D 215 2.02 REMARK 500 OE1 GLU C 103 OH TYR C 171 2.04 REMARK 500 ND1 HIS C 33 O TYR C 48 2.05 REMARK 500 NH1 ARG A 52 CG2 VAL B 103 2.05 REMARK 500 NH2 ARG A 45 OD1 ASP B 109 2.10 REMARK 500 O ILE A 32 O ASP A 49 2.14 REMARK 500 OE1 GLU A 103 OH TYR A 171 2.15 REMARK 500 ND2 ASN B 204 OD1 ASP B 215 2.19 REMARK 500 NH2 ARG A 186 OE2 GLU D 42 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 53 OG SER D 169 2747 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 138 CE1 TYR A 138 CZ -0.104 REMARK 500 GLU C 121 CD GLU C 121 OE1 -0.067 REMARK 500 PRO D 41 CD PRO D 41 N -0.223 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 139 C - N - CD ANGL. DEV. = 16.1 DEGREES REMARK 500 GLU A 211 CA - C - N ANGL. DEV. = 25.6 DEGREES REMARK 500 GLU A 211 O - C - N ANGL. DEV. = -26.8 DEGREES REMARK 500 CYS D 22 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 GLU D 42 N - CA - C ANGL. DEV. = -21.0 DEGREES REMARK 500 LYS D 43 N - CA - C ANGL. DEV. = 25.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 2 97.53 -164.54 REMARK 500 TRP A 46 -61.69 -134.81 REMARK 500 ASP A 49 -125.92 63.30 REMARK 500 ALA A 82 105.05 -45.96 REMARK 500 SER A 92 -80.08 -116.64 REMARK 500 ASN A 136 75.26 61.59 REMARK 500 LYS A 167 -71.99 -107.86 REMARK 500 ASN A 188 -52.55 -122.63 REMARK 500 THR A 198 -77.47 -102.08 REMARK 500 ALA B 92 165.19 175.41 REMARK 500 THR B 102 -156.16 -110.71 REMARK 500 GLU B 105 -159.42 -134.78 REMARK 500 LEU B 132 79.98 -116.98 REMARK 500 ALA B 141 -159.99 -153.22 REMARK 500 PHE B 154 -80.28 -91.68 REMARK 500 SER B 180 28.07 84.19 REMARK 500 ASP B 181 31.28 37.41 REMARK 500 SER C 7 -110.13 -25.57 REMARK 500 TRP C 46 -51.25 -133.89 REMARK 500 ASP C 49 -81.49 -100.53 REMARK 500 THR C 50 -51.92 -138.13 REMARK 500 ALA C 82 108.07 -58.16 REMARK 500 SER C 91 -42.80 -132.65 REMARK 500 SER C 92 -44.93 -141.25 REMARK 500 SER C 151 -158.06 -89.70 REMARK 500 LYS C 167 -62.93 -109.50 REMARK 500 ASN C 188 -40.12 -139.39 REMARK 500 ASN C 210 36.17 -94.80 REMARK 500 SER D 28 106.23 -58.77 REMARK 500 SER D 52 176.94 -59.59 REMARK 500 VAL D 64 -22.14 -145.89 REMARK 500 LYS D 65 93.45 -55.45 REMARK 500 ASN D 77 74.45 45.25 REMARK 500 GLU D 105 -159.73 -129.12 REMARK 500 TYR D 106 -168.93 -121.81 REMARK 500 TYR D 107 149.81 -177.74 REMARK 500 LEU D 132 75.98 -106.64 REMARK 500 ALA D 141 -169.41 -161.13 REMARK 500 PHE D 154 -76.82 -102.61 REMARK 500 SER D 180 66.81 63.37 REMARK 500 SER D 187 118.12 -162.33 REMARK 500 SER D 193 -8.10 -55.75 REMARK 500 THR D 200 120.59 -38.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 6 SER A 7 -147.71 REMARK 500 GLU A 211 CYS A 212 -144.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 211 -18.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 5WTG A 1 212 PDB 5WTG 5WTG 1 212 DBREF 5WTG B 1 221 PDB 5WTG 5WTG 1 221 DBREF 5WTG C 1 212 PDB 5WTG 5WTG 1 212 DBREF 5WTG D 1 221 PDB 5WTG 5WTG 1 221 SEQRES 1 A 212 ASP ILE VAL LEU THR GLN SER PRO ALA ILE MET SER ALA SEQRES 2 A 212 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 A 212 SER SER VAL SER TYR ILE HIS TRP TYR GLN GLN LYS SER SEQRES 4 A 212 GLY THR SER PRO LYS ARG TRP ILE TYR ASP THR SER ARG SEQRES 5 A 212 LEU ALA PHE GLY VAL PRO GLY ARG PHE SER GLY SER GLY SEQRES 6 A 212 SER GLY THR SER TYR SER LEU THR ILE SER SER MET GLU SEQRES 7 A 212 ALA GLU ASP ALA ALA THR TYR TYR CYS GLN GLN TRP SER SEQRES 8 A 212 SER ASN TYR THR PHE GLY GLY GLY THR ASN LEU GLU ILE SEQRES 9 A 212 LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE PRO SEQRES 10 A 212 PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER VAL SEQRES 11 A 212 VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE ASN SEQRES 12 A 212 VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN GLY SEQRES 13 A 212 VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SER SEQRES 14 A 212 THR TYR SER MET SER SER THR LEU THR LEU THR LYS ASP SEQRES 15 A 212 GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA THR SEQRES 16 A 212 HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE ASN SEQRES 17 A 212 ARG ASN GLU CYS SEQRES 1 B 221 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY SER VAL LYS SEQRES 2 B 221 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 B 221 PHE SER PHE SER THR TYR GLY MET SER TRP VAL ARG GLN SEQRES 4 B 221 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 B 221 GLY GLY GLY GLY TYR THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 B 221 GLY ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN ILE SEQRES 7 B 221 LEU TYR LEU GLN MET SER SER LEU ARG SER GLY ASP THR SEQRES 8 B 221 ALA MET TYR TYR CYS ALA ARG ARG VAL THR THR VAL ALA SEQRES 9 B 221 GLU TYR TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU SEQRES 10 B 221 THR VAL SER SER PRO LYS THR THR PRO PRO SER VAL TYR SEQRES 11 B 221 PRO LEU ALA PRO ALA SER ALA SER THR ALA ALA SER MET SEQRES 12 B 221 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 B 221 PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SEQRES 14 B 221 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU SEQRES 15 B 221 TYR THR LEU SER SER SER VAL THR VAL PRO SER SER THR SEQRES 16 B 221 TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO SEQRES 17 B 221 ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 1 C 212 ASP ILE VAL LEU THR GLN SER PRO ALA ILE MET SER ALA SEQRES 2 C 212 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 C 212 SER SER VAL SER TYR ILE HIS TRP TYR GLN GLN LYS SER SEQRES 4 C 212 GLY THR SER PRO LYS ARG TRP ILE TYR ASP THR SER ARG SEQRES 5 C 212 LEU ALA PHE GLY VAL PRO GLY ARG PHE SER GLY SER GLY SEQRES 6 C 212 SER GLY THR SER TYR SER LEU THR ILE SER SER MET GLU SEQRES 7 C 212 ALA GLU ASP ALA ALA THR TYR TYR CYS GLN GLN TRP SER SEQRES 8 C 212 SER ASN TYR THR PHE GLY GLY GLY THR ASN LEU GLU ILE SEQRES 9 C 212 LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE PRO SEQRES 10 C 212 PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER VAL SEQRES 11 C 212 VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE ASN SEQRES 12 C 212 VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN GLY SEQRES 13 C 212 VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SER SEQRES 14 C 212 THR TYR SER MET SER SER THR LEU THR LEU THR LYS ASP SEQRES 15 C 212 GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA THR SEQRES 16 C 212 HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE ASN SEQRES 17 C 212 ARG ASN GLU CYS SEQRES 1 D 221 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY SER VAL LYS SEQRES 2 D 221 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 D 221 PHE SER PHE SER THR TYR GLY MET SER TRP VAL ARG GLN SEQRES 4 D 221 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 D 221 GLY GLY GLY GLY TYR THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 D 221 GLY ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN ILE SEQRES 7 D 221 LEU TYR LEU GLN MET SER SER LEU ARG SER GLY ASP THR SEQRES 8 D 221 ALA MET TYR TYR CYS ALA ARG ARG VAL THR THR VAL ALA SEQRES 9 D 221 GLU TYR TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU SEQRES 10 D 221 THR VAL SER SER PRO LYS THR THR PRO PRO SER VAL TYR SEQRES 11 D 221 PRO LEU ALA PRO ALA SER ALA SER THR ALA ALA SER MET SEQRES 12 D 221 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 D 221 PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SEQRES 14 D 221 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU SEQRES 15 D 221 TYR THR LEU SER SER SER VAL THR VAL PRO SER SER THR SEQRES 16 D 221 TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO SEQRES 17 D 221 ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG HELIX 1 AA1 GLU A 78 ALA A 82 5 5 HELIX 2 AA2 SER A 119 THR A 124 1 6 HELIX 3 AA3 LYS A 181 ARG A 186 1 6 HELIX 4 AA4 SER B 28 TYR B 32 5 5 HELIX 5 AA5 ARG B 87 THR B 91 5 5 HELIX 6 AA6 LEU B 167 SER B 169 5 3 HELIX 7 AA7 GLU C 78 ALA C 82 5 5 HELIX 8 AA8 SER C 119 THR C 124 1 6 HELIX 9 AA9 LYS C 181 HIS C 187 1 7 HELIX 10 AB1 ASN C 210 CYS C 212 5 3 HELIX 11 AB2 SER D 28 TYR D 32 5 5 HELIX 12 AB3 ARG D 87 THR D 91 5 5 HELIX 13 AB4 SER D 164 SER D 166 5 3 HELIX 14 AB5 LEU D 167 SER D 169 5 3 SHEET 1 AA1 3 LEU A 4 GLN A 6 0 SHEET 2 AA1 3 VAL A 19 VAL A 29 -1 O SER A 24 N THR A 5 SHEET 3 AA1 3 PHE A 61 ILE A 74 -1 O ILE A 74 N VAL A 19 SHEET 1 AA2 6 ILE A 10 ALA A 13 0 SHEET 2 AA2 6 THR A 100 ILE A 104 1 O GLU A 103 N MET A 11 SHEET 3 AA2 6 THR A 84 GLN A 89 -1 N TYR A 85 O THR A 100 SHEET 4 AA2 6 ILE A 32 GLN A 37 -1 N GLN A 37 O THR A 84 SHEET 5 AA2 6 LYS A 44 TYR A 48 -1 O LYS A 44 N GLN A 36 SHEET 6 AA2 6 ARG A 52 LEU A 53 -1 O ARG A 52 N TYR A 48 SHEET 1 AA3 4 THR A 112 PHE A 116 0 SHEET 2 AA3 4 GLY A 127 PHE A 137 -1 O PHE A 133 N SER A 114 SHEET 3 AA3 4 TYR A 171 THR A 180 -1 O LEU A 177 N VAL A 130 SHEET 4 AA3 4 VAL A 157 TRP A 161 -1 N LEU A 158 O THR A 176 SHEET 1 AA4 3 ASN A 143 ILE A 148 0 SHEET 2 AA4 3 SER A 189 THR A 195 -1 O THR A 191 N LYS A 147 SHEET 3 AA4 3 ILE A 203 ASN A 208 -1 O ILE A 203 N ALA A 194 SHEET 1 AA5 4 LYS B 3 SER B 7 0 SHEET 2 AA5 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA5 4 ILE B 78 MET B 83 -1 O LEU B 81 N LEU B 20 SHEET 4 AA5 4 PHE B 68 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 AA6 6 GLY B 10 VAL B 12 0 SHEET 2 AA6 6 THR B 115 VAL B 119 1 O THR B 118 N GLY B 10 SHEET 3 AA6 6 ALA B 92 THR B 101 -1 N TYR B 94 O THR B 115 SHEET 4 AA6 6 GLY B 33 THR B 40 -1 N VAL B 37 O TYR B 95 SHEET 5 AA6 6 ARG B 44 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 AA6 6 THR B 58 TYR B 59 -1 O TYR B 59 N THR B 50 SHEET 1 AA7 4 GLY B 10 VAL B 12 0 SHEET 2 AA7 4 THR B 115 VAL B 119 1 O THR B 118 N GLY B 10 SHEET 3 AA7 4 ALA B 92 THR B 101 -1 N TYR B 94 O THR B 115 SHEET 4 AA7 4 TYR B 106 TRP B 111 -1 O TYR B 107 N VAL B 100 SHEET 1 AA8 4 SER B 128 LEU B 132 0 SHEET 2 AA8 4 MET B 143 TYR B 153 -1 O LYS B 151 N SER B 128 SHEET 3 AA8 4 TYR B 183 PRO B 192 -1 O TYR B 183 N TYR B 153 SHEET 4 AA8 4 VAL B 171 LEU B 178 -1 N HIS B 172 O SER B 188 SHEET 1 AA9 3 THR B 159 TRP B 162 0 SHEET 2 AA9 3 VAL B 201 HIS B 207 -1 O ASN B 204 N THR B 161 SHEET 3 AA9 3 THR B 212 ILE B 218 -1 O VAL B 214 N VAL B 205 SHEET 1 AB1 4 LEU C 4 GLN C 6 0 SHEET 2 AB1 4 VAL C 19 ALA C 25 -1 O SER C 24 N THR C 5 SHEET 3 AB1 4 SER C 69 ILE C 74 -1 O TYR C 70 N CYS C 23 SHEET 4 AB1 4 PHE C 61 SER C 66 -1 N SER C 62 O THR C 73 SHEET 1 AB2 5 ILE C 10 ALA C 13 0 SHEET 2 AB2 5 THR C 100 ILE C 104 1 O GLU C 103 N ALA C 13 SHEET 3 AB2 5 THR C 84 GLN C 88 -1 N TYR C 85 O THR C 100 SHEET 4 AB2 5 HIS C 33 GLN C 37 -1 N HIS C 33 O GLN C 88 SHEET 5 AB2 5 PRO C 43 ILE C 47 -1 O LYS C 44 N GLN C 36 SHEET 1 AB3 4 THR C 112 PHE C 116 0 SHEET 2 AB3 4 GLY C 127 PHE C 137 -1 O ASN C 135 N THR C 112 SHEET 3 AB3 4 TYR C 171 THR C 180 -1 O LEU C 179 N ALA C 128 SHEET 4 AB3 4 VAL C 157 TRP C 161 -1 N SER C 160 O SER C 174 SHEET 1 AB4 3 ILE C 142 ILE C 148 0 SHEET 2 AB4 3 SER C 189 HIS C 196 -1 O THR C 195 N ASN C 143 SHEET 3 AB4 3 ILE C 203 ASN C 208 -1 O ILE C 203 N ALA C 194 SHEET 1 AB5 4 LYS D 3 SER D 7 0 SHEET 2 AB5 4 LEU D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 AB5 4 ILE D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AB5 4 PHE D 68 ASP D 73 -1 N SER D 71 O TYR D 80 SHEET 1 AB6 6 SER D 11 VAL D 12 0 SHEET 2 AB6 6 THR D 115 VAL D 119 1 O THR D 118 N VAL D 12 SHEET 3 AB6 6 ALA D 92 THR D 101 -1 N ALA D 92 O LEU D 117 SHEET 4 AB6 6 GLY D 33 GLN D 39 -1 N VAL D 37 O TYR D 95 SHEET 5 AB6 6 LEU D 45 ILE D 51 -1 O ILE D 51 N MET D 34 SHEET 6 AB6 6 THR D 58 TYR D 59 -1 O TYR D 59 N THR D 50 SHEET 1 AB7 4 SER D 11 VAL D 12 0 SHEET 2 AB7 4 THR D 115 VAL D 119 1 O THR D 118 N VAL D 12 SHEET 3 AB7 4 ALA D 92 THR D 101 -1 N ALA D 92 O LEU D 117 SHEET 4 AB7 4 TYR D 106 TRP D 111 -1 O TYR D 110 N ARG D 98 SHEET 1 AB8 4 SER D 128 LEU D 132 0 SHEET 2 AB8 4 MET D 143 TYR D 153 -1 O LEU D 149 N TYR D 130 SHEET 3 AB8 4 TYR D 183 PRO D 192 -1 O TYR D 183 N TYR D 153 SHEET 4 AB8 4 VAL D 171 LEU D 178 -1 N HIS D 172 O SER D 188 SHEET 1 AB9 3 THR D 159 TRP D 162 0 SHEET 2 AB9 3 VAL D 201 HIS D 207 -1 O ASN D 204 N THR D 161 SHEET 3 AB9 3 THR D 212 ILE D 218 -1 O VAL D 214 N VAL D 205 SSBOND 1 CYS A 23 CYS A 87 1555 1555 2.05 SSBOND 2 CYS A 132 CYS A 192 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 96 1555 1555 1.94 SSBOND 4 CYS B 148 CYS B 203 1555 1555 2.05 SSBOND 5 CYS C 23 CYS C 87 1555 1555 2.08 SSBOND 6 CYS C 132 CYS C 192 1555 1555 1.80 SSBOND 7 CYS D 22 CYS D 96 1555 1555 2.01 SSBOND 8 CYS D 148 CYS D 203 1555 1555 2.03 CISPEP 1 TYR A 138 PRO A 139 0 -2.25 CISPEP 2 TRP B 196 PRO B 197 0 4.33 CISPEP 3 TYR C 138 PRO C 139 0 4.51 CISPEP 4 TRP D 196 PRO D 197 0 3.58 CRYST1 52.512 140.522 68.924 90.00 110.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019043 0.000000 0.007066 0.00000 SCALE2 0.000000 0.007116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015475 0.00000