HEADER FLUORESCENT PROTEIN/INHIBITOR 14-DEC-16 5WTS TITLE GREEN FLUORESCENT PROTEIN LINKED MTIDE-02 INHIBITOR IN COMPLEX WITH TITLE 2 MDM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN LINKED MTIDE-02; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: UNP RESIDUES 6-125; COMPND 9 SYNONYM: DOUBLE MINUTE 2 PROTEIN,HDM2,ONCOPROTEIN MDM2,P53-BINDING COMPND 10 PROTEIN MDM2; COMPND 11 EC: 2.3.2.27; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA, CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100, 9838; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MDM2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLUORESCENT PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.WONGSANTICHON,R.C.ROBINSON,F.J.GHADESSY REVDAT 6 23-OCT-24 5WTS 1 REMARK REVDAT 5 25-NOV-20 5WTS 1 HEADER COMPND SOURCE KEYWDS REVDAT 5 2 1 DBREF SEQADV REVDAT 4 18-NOV-20 5WTS 1 SOURCE REVDAT 3 06-NOV-19 5WTS 1 TITLE COMPND KEYWDS REVDAT 2 12-SEP-18 5WTS 1 SOURCE REVDAT 1 20-DEC-17 5WTS 0 JRNL AUTH S.M.Q.CHEE,J.WONGSANTICHON,B.SANA,R.C.ROBINSON,F.J.GHADESSY JRNL TITL GREEN FLUORESCENT PROTEIN LINKED PEPTIDE INHIBITOR PMI IN JRNL TITL 2 COMPLEX WITH MDM2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 10564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.0077 - 4.7522 0.96 2724 150 0.1904 0.2465 REMARK 3 2 4.7522 - 3.7803 0.98 2709 137 0.1817 0.2129 REMARK 3 3 3.7803 - 3.3049 0.98 2661 130 0.2347 0.2668 REMARK 3 4 3.3049 - 3.0038 0.73 1943 110 0.2561 0.2855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3673 REMARK 3 ANGLE : 0.473 4964 REMARK 3 CHIRALITY : 0.041 538 REMARK 3 PLANARITY : 0.002 635 REMARK 3 DIHEDRAL : 15.342 2176 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2039 -18.2570 -28.7604 REMARK 3 T TENSOR REMARK 3 T11: 0.5738 T22: 0.4823 REMARK 3 T33: 0.5500 T12: -0.1839 REMARK 3 T13: -0.0705 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.2058 L22: 1.9517 REMARK 3 L33: 1.2087 L12: 0.6122 REMARK 3 L13: 0.6405 L23: 0.0154 REMARK 3 S TENSOR REMARK 3 S11: 0.1531 S12: -0.1570 S13: 0.1086 REMARK 3 S21: 0.7067 S22: 0.0909 S23: -0.4875 REMARK 3 S31: -0.2410 S32: 0.5694 S33: -0.2136 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6894 -13.0967 -27.6812 REMARK 3 T TENSOR REMARK 3 T11: 0.8296 T22: 0.3645 REMARK 3 T33: 0.5349 T12: -0.1969 REMARK 3 T13: 0.0818 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.2751 L22: 0.7745 REMARK 3 L33: 2.0638 L12: -0.6800 REMARK 3 L13: -0.3938 L23: 0.7469 REMARK 3 S TENSOR REMARK 3 S11: 0.0564 S12: -0.1402 S13: 0.4519 REMARK 3 S21: 0.8573 S22: 0.0992 S23: -0.1181 REMARK 3 S31: -0.4790 S32: 0.1966 S33: -0.1081 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0958 -21.7996 -29.6887 REMARK 3 T TENSOR REMARK 3 T11: 0.6477 T22: 0.3555 REMARK 3 T33: 0.4206 T12: -0.1108 REMARK 3 T13: -0.0133 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.7078 L22: 1.2581 REMARK 3 L33: 0.6144 L12: -0.1445 REMARK 3 L13: -0.8774 L23: -0.0152 REMARK 3 S TENSOR REMARK 3 S11: 0.0497 S12: -0.1154 S13: 0.2210 REMARK 3 S21: 0.7624 S22: -0.1106 S23: -0.0632 REMARK 3 S31: -0.4345 S32: 0.4150 S33: 0.1295 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0905 -40.6002 -19.3061 REMARK 3 T TENSOR REMARK 3 T11: 0.6453 T22: 0.5721 REMARK 3 T33: 0.3669 T12: -0.0875 REMARK 3 T13: 0.1176 T23: -0.0513 REMARK 3 L TENSOR REMARK 3 L11: 0.0716 L22: 1.0362 REMARK 3 L33: 1.5009 L12: -0.2209 REMARK 3 L13: -0.2701 L23: 0.3818 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.2809 S13: -0.0289 REMARK 3 S21: 1.0384 S22: -0.2322 S23: 0.3211 REMARK 3 S31: 0.0865 S32: -0.2678 S33: 0.1086 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0096 -33.1769 -11.8575 REMARK 3 T TENSOR REMARK 3 T11: 1.1728 T22: 0.5197 REMARK 3 T33: 0.3035 T12: -0.0434 REMARK 3 T13: 0.1031 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.7116 L22: 1.8364 REMARK 3 L33: 2.2502 L12: -0.1168 REMARK 3 L13: -0.2979 L23: 0.0176 REMARK 3 S TENSOR REMARK 3 S11: -0.2493 S12: 0.1284 S13: 0.0708 REMARK 3 S21: 0.0401 S22: -0.0603 S23: 0.0819 REMARK 3 S31: 0.0735 S32: -0.3433 S33: 0.2481 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3238 -53.6658 -19.8962 REMARK 3 T TENSOR REMARK 3 T11: 0.8289 T22: 0.9153 REMARK 3 T33: 0.5442 T12: 0.0813 REMARK 3 T13: 0.0139 T23: 0.1354 REMARK 3 L TENSOR REMARK 3 L11: 0.0064 L22: -0.0004 REMARK 3 L33: 0.0057 L12: -0.0070 REMARK 3 L13: 0.0040 L23: -0.0028 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: 0.2536 S13: -0.0401 REMARK 3 S21: 0.2441 S22: -0.0425 S23: -0.1727 REMARK 3 S31: 0.0114 S32: -0.0044 S33: 0.0747 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0697 -51.1207 -45.1024 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.5824 REMARK 3 T33: 0.7503 T12: -0.1328 REMARK 3 T13: -0.1425 T23: 0.2787 REMARK 3 L TENSOR REMARK 3 L11: 0.4220 L22: 0.0375 REMARK 3 L33: 0.7154 L12: 0.0169 REMARK 3 L13: 0.5413 L23: 0.0535 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.1274 S13: -0.2654 REMARK 3 S21: -0.0964 S22: 0.1434 S23: 0.0239 REMARK 3 S31: 0.1216 S32: -0.0936 S33: -0.0084 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1539 -40.9042 -47.2580 REMARK 3 T TENSOR REMARK 3 T11: -0.2664 T22: 0.3507 REMARK 3 T33: 0.4895 T12: 0.0617 REMARK 3 T13: -0.0062 T23: 0.0777 REMARK 3 L TENSOR REMARK 3 L11: 1.0594 L22: 0.6405 REMARK 3 L33: 1.5105 L12: 0.0174 REMARK 3 L13: -0.0449 L23: 0.0488 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0353 S13: 0.5002 REMARK 3 S21: -0.1725 S22: 0.3133 S23: 0.1711 REMARK 3 S31: -0.6095 S32: -0.0669 S33: 0.0611 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1032 -38.8820 -37.8653 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.6510 REMARK 3 T33: 0.6764 T12: 0.2284 REMARK 3 T13: 0.0758 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.6654 L22: 2.9990 REMARK 3 L33: 0.8589 L12: 1.7993 REMARK 3 L13: -1.3918 L23: -0.9531 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: -0.5317 S13: 0.1459 REMARK 3 S21: 0.2097 S22: -0.0117 S23: -0.0988 REMARK 3 S31: -0.1686 S32: 0.0365 S33: -0.0195 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WTS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11255 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.007 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 14.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 0.1M BIS-TRIS, REMARK 280 25% PEG3350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.88300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.21100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 109.49400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.88300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.21100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 109.49400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.88300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.21100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 109.49400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.88300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.21100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 109.49400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 MET B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 PRO B 6 REMARK 465 THR B 7 REMARK 465 ASP B 8 REMARK 465 GLY B 9 REMARK 465 ALA B 10 REMARK 465 VAL B 11 REMARK 465 ASN B 108 REMARK 465 GLN B 109 REMARK 465 GLN B 110 REMARK 465 GLU B 111 REMARK 465 SER B 112 REMARK 465 SER B 113 REMARK 465 ASP B 114 REMARK 465 SER B 115 REMARK 465 GLY B 116 REMARK 465 THR B 117 REMARK 465 SER B 118 REMARK 465 VAL B 119 REMARK 465 SER B 120 REMARK 465 GLU B 121 REMARK 465 ASN B 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 69 1.60 -66.21 REMARK 500 ASP A 103 -160.97 -169.05 REMARK 500 GLU A 172 1.85 -67.51 REMARK 500 ARG A 307 2.21 -151.96 REMARK 500 VAL A 340 42.20 -102.89 REMARK 500 GLN B 21 52.50 -99.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 202 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE UNIPROT REMARK 999 KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. THIS REMARK 999 IS AN ENGINEERED CONSTRUCT OF VSFGFP (PDB:4PFE) WITH 12-MER PMI REMARK 999 INHIBITOR INSERTION, BASICALLY REPLACING RESIDUES 230-231 (AQ) WITH REMARK 999 (TTSFAEYWALLS). DBREF 5WTS A 1 230 PDB 5WTS 5WTS 1 230 DBREF 5WTS A 231 360 PDB 5WTS 5WTS 231 360 DBREF 5WTS B 3 122 UNP Q00987 MDM2_HUMAN 6 125 SEQADV 5WTS GLY B 1 UNP Q00987 EXPRESSION TAG SEQADV 5WTS PRO B 2 UNP Q00987 EXPRESSION TAG SEQRES 1 A 358 MET SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO SEQRES 2 A 358 ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS SEQRES 3 A 358 PHE SER VAL ARG GLY GLU GLY GLU GLY ASP ALA THR ASN SEQRES 4 A 358 GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS SEQRES 5 A 358 LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO SEQRES 6 A 358 VAL GLN CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG SEQRES 7 A 358 HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL SEQRES 8 A 358 GLN GLU ARG THR ILE SER PHE LYS ASP ASP GLY THR TYR SEQRES 9 A 358 LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU SEQRES 10 A 358 VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU SEQRES 11 A 358 ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN PHE SEQRES 12 A 358 ASN SER HIS ASN VAL TYR ILE THR ALA ASP LYS GLN LYS SEQRES 13 A 358 ASN GLY ILE LYS ALA ASN PHE LYS ILE ARG HIS ASN VAL SEQRES 14 A 358 GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN SEQRES 15 A 358 ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP SEQRES 16 A 358 ASN HIS TYR LEU SER THR GLN SER VAL LEU SER LYS ASP SEQRES 17 A 358 PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE SEQRES 18 A 358 VAL THR ALA ALA GLY ILE THR THR SER PHE ALA GLU TYR SEQRES 19 A 358 TRP ALA LEU LEU SER VAL GLN LEU VAL GLU SER GLY GLY SEQRES 20 A 358 ALA LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS SEQRES 21 A 358 ALA ALA SER GLY PHE PRO VAL ASN ARG TYR SER MET ARG SEQRES 22 A 358 TRP TYR ARG GLN ALA PRO GLY LYS GLU ARG GLU TRP VAL SEQRES 23 A 358 ALA GLY MET SER SER ALA GLY ASP ARG SER SER TYR GLU SEQRES 24 A 358 ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SEQRES 25 A 358 ALA ARG ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS SEQRES 26 A 358 PRO GLU ASP THR ALA VAL TYR TYR CYS ASN VAL ASN VAL SEQRES 27 A 358 GLY PHE GLU TYR TRP GLY GLN GLY THR GLN VAL THR VAL SEQRES 28 A 358 SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 122 GLY PRO MET SER VAL PRO THR ASP GLY ALA VAL THR THR SEQRES 2 B 122 SER GLN ILE PRO ALA SER GLU GLN GLU THR LEU VAL ARG SEQRES 3 B 122 PRO LYS PRO LEU LEU LEU LYS LEU LEU LYS SER VAL GLY SEQRES 4 B 122 ALA GLN LYS ASP THR TYR THR MET LYS GLU VAL LEU PHE SEQRES 5 B 122 TYR LEU GLY GLN TYR ILE MET THR LYS ARG LEU TYR ASP SEQRES 6 B 122 GLU LYS GLN GLN HIS ILE VAL TYR CYS SER ASN ASP LEU SEQRES 7 B 122 LEU GLY ASP LEU PHE GLY VAL PRO SER PHE SER VAL LYS SEQRES 8 B 122 GLU HIS ARG LYS ILE TYR THR MET ILE TYR ARG ASN LEU SEQRES 9 B 122 VAL VAL VAL ASN GLN GLN GLU SER SER ASP SER GLY THR SEQRES 10 B 122 SER VAL SER GLU ASN MODRES 5WTS LEU A 64 TYR CHROMOPHORE MODRES 5WTS CRO A 66 GLY CHROMOPHORE HET CRO A 66 22 HET GOL A 401 14 HET PO4 A 402 5 HET PG4 B 201 13 HET PO4 B 202 5 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN CRO PEPTIDE DERIVED CHROMOPHORE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CRO C15 H17 N3 O5 FORMUL 3 GOL C3 H8 O3 FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 PG4 C8 H18 O5 FORMUL 7 HOH *7(H2 O) HELIX 1 AA1 LYS A 3 PHE A 8 5 6 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 SER A 232 VAL A 245 1 14 HELIX 7 AA7 PRO A 268 TYR A 272 5 5 HELIX 8 AA8 LYS A 327 THR A 331 5 5 HELIX 9 AA9 LYS B 28 GLY B 39 1 12 HELIX 10 AB1 MET B 47 LYS B 61 1 15 HELIX 11 AB2 ASP B 77 GLY B 84 1 8 HELIX 12 AB3 GLU B 92 ARG B 102 1 11 SHEET 1 AA112 VAL A 11 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O GLY A 33 N ILE A 14 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 45 N GLU A 32 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N GLN A 204 O PHE A 223 SHEET 6 AA112 ASN A 149 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O LYS A 162 N THR A 153 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O GLN A 177 N HIS A 169 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 AA112 THR A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 AA112 THR A 118 ILE A 128 -1 O LYS A 126 N LYS A 107 SHEET 12 AA112 VAL A 11 VAL A 22 1 N GLU A 17 O ILE A 123 SHEET 1 AA2 6 ALA A 250 VAL A 252 0 SHEET 2 AA2 6 GLN A 350 VAL A 353 1 O THR A 352 N ALA A 250 SHEET 3 AA2 6 ALA A 332 ASN A 339 -1 N ALA A 332 O VAL A 351 SHEET 4 AA2 6 MET A 274 GLN A 279 -1 N ARG A 275 O ASN A 337 SHEET 5 AA2 6 GLU A 286 MET A 291 -1 O VAL A 288 N TRP A 276 SHEET 6 AA2 6 SER A 298 TYR A 300 -1 O SER A 299 N GLY A 290 SHEET 1 AA3 4 ALA A 250 VAL A 252 0 SHEET 2 AA3 4 GLN A 350 VAL A 353 1 O THR A 352 N ALA A 250 SHEET 3 AA3 4 ALA A 332 ASN A 339 -1 N ALA A 332 O VAL A 351 SHEET 4 AA3 4 GLU A 343 TRP A 345 -1 O TYR A 344 N VAL A 338 SHEET 1 AA4 3 LEU A 258 ALA A 263 0 SHEET 2 AA4 3 THR A 318 MET A 323 -1 O MET A 323 N LEU A 258 SHEET 3 AA4 3 PHE A 308 ASP A 313 -1 N THR A 309 O GLN A 322 SHEET 1 AA5 3 TYR B 45 THR B 46 0 SHEET 2 AA5 3 LEU B 24 PRO B 27 -1 N VAL B 25 O TYR B 45 SHEET 3 AA5 3 LEU B 104 VAL B 106 -1 O VAL B 105 N ARG B 26 SHEET 1 AA6 2 ILE B 71 TYR B 73 0 SHEET 2 AA6 2 SER B 87 SER B 89 -1 O PHE B 88 N VAL B 72 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.33 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.33 CISPEP 1 MET A 88 PRO A 89 0 1.90 CISPEP 2 ILE B 16 PRO B 17 0 4.27 SITE 1 AC1 2 TYR A 151 ARG A 168 SITE 1 AC2 6 HIS A 77 ALA A 227 GLY A 228 ILE A 229 SITE 2 AC2 6 THR A 230 LYS B 42 SITE 1 AC3 8 GLN A 157 HOH A 502 SER B 75 ASP B 77 SITE 2 AC3 8 ASP B 81 GLY B 84 VAL B 85 PRO B 86 SITE 1 AC4 6 PRO A 75 ASP A 76 HIS A 77 LYS B 42 SITE 2 AC4 6 ASP B 43 THR B 44 CRYST1 51.766 98.422 218.988 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019318 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004566 0.00000