HEADER HYDROLASE 21-DEC-16 5WV1 TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF RIBOSOME INACTIVATING PROTEIN FROM TITLE 2 MOMORDICA BALSAMINA WITH RIBOSE SUGAR AT 1.90 A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME INACTIVATING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.2.22 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MOMORDICA BALSAMINA; SOURCE 3 ORGANISM_COMMON: BITTER GOURD; SOURCE 4 ORGANISM_TAXID: 3672 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SHOKEEN,P.K.SINGH,S.PANDEY,P.KAUR,S.SHARMA,T.P.SINGH REVDAT 3 22-NOV-23 5WV1 1 HETSYN REVDAT 2 29-JUL-20 5WV1 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 25-JAN-17 5WV1 0 JRNL AUTH A.SHOKEEN,P.K.SINGH,S.PANDEY JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF RIBOSOME INACTIVATING JRNL TITL 2 PROTEIN FROM MOMORDICA BALSAMINA WITH RIBOSE SUGAR AT 1.90 A JRNL TITL 3 RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 19391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1911 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 0.86000 REMARK 3 B12 (A**2) : -0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.518 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1976 ; 0.028 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1906 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2690 ; 2.446 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4368 ; 1.237 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 6.172 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;36.079 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;15.328 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.173 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 322 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2224 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 449 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 983 ; 1.111 ; 1.618 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 982 ; 1.109 ; 1.617 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1227 ; 1.540 ; 2.417 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1228 ; 1.540 ; 2.418 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 993 ; 1.877 ; 1.902 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 993 ; 1.867 ; 1.903 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1464 ; 2.824 ; 2.763 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2364 ; 6.324 ;14.917 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2365 ; 6.322 ;14.934 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 246 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3029 -12.6873 -13.3128 REMARK 3 T TENSOR REMARK 3 T11: 0.0135 T22: 0.0144 REMARK 3 T33: 0.2762 T12: -0.0102 REMARK 3 T13: -0.0272 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.8380 L22: 1.7788 REMARK 3 L33: 0.9843 L12: 0.2848 REMARK 3 L13: -0.8223 L23: -0.3158 REMARK 3 S TENSOR REMARK 3 S11: -0.0400 S12: -0.0299 S13: -0.2476 REMARK 3 S21: -0.0052 S22: 0.0292 S23: 0.2041 REMARK 3 S31: 0.0844 S32: -0.0741 S33: 0.0108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1300002430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20400 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 38.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3RL9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 6000, 0.1M SODIUM PHOSPHATE, REMARK 280 PH 6.7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.87400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.45502 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 13.81900 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 64.87400 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 37.45502 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.81900 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 64.87400 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 37.45502 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.81900 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.91004 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 27.63800 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 74.91004 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 27.63800 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 74.91004 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 27.63800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 89 O HOH A 401 2.03 REMARK 500 O HOH A 549 O HOH A 550 2.08 REMARK 500 NH1 ARG A 222 O HOH A 402 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 112 CG GLU A 112 CD 0.173 REMARK 500 GLU A 112 CD GLU A 112 OE1 0.070 REMARK 500 GLN A 170 CD GLN A 170 OE1 0.188 REMARK 500 GLU A 179 CD GLU A 179 OE1 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET A 16 CG - SD - CE ANGL. DEV. = 10.5 DEGREES REMARK 500 GLU A 112 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP A 143 CB - CG - OD1 ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP A 143 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 ASP A 217 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 222 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 77 -106.06 67.51 REMARK 500 PRO A 106 32.91 -86.10 REMARK 500 THR A 158 -81.11 -117.58 REMARK 500 SER A 235 31.98 -141.95 REMARK 500 ASN A 236 -77.82 -152.02 REMARK 500 REMARK 500 REMARK: NULL DBREF 5WV1 A 1 246 UNP D9J2T9 D9J2T9_MOMBA 1 246 SEQRES 1 A 246 ASP VAL SER PHE ARG LEU SER GLY ALA ASP PRO SER SER SEQRES 2 A 246 TYR GLY MET PHE ILE LYS ASP LEU ARG ASN ALA LEU PRO SEQRES 3 A 246 HIS THR GLU LYS VAL TYR ASN ILE PRO LEU LEU LEU PRO SEQRES 4 A 246 SER VAL SER GLY ALA GLY ARG TYR LEU LEU MET HIS LEU SEQRES 5 A 246 PHE ASN TYR ASP GLY ASN THR ILE THR VAL ALA VAL ASP SEQRES 6 A 246 VAL THR ASN VAL TYR ILE MET GLY TYR LEU ALA LEU THR SEQRES 7 A 246 THR SER TYR PHE PHE ASN GLU PRO ALA ALA ASP LEU ALA SEQRES 8 A 246 SER GLN TYR VAL PHE ARG SER ALA ARG ARG LYS ILE THR SEQRES 9 A 246 LEU PRO TYR SER GLY ASN TYR GLU ARG LEU GLN ILE ALA SEQRES 10 A 246 ALA GLY LYS PRO ARG GLU LYS ILE PRO ILE GLY LEU PRO SEQRES 11 A 246 ALA LEU ASP THR ALA ILE SER THR LEU LEU HIS TYR ASP SEQRES 12 A 246 SER THR ALA ALA ALA GLY ALA LEU LEU VAL LEU ILE GLN SEQRES 13 A 246 THR THR ALA GLU ALA ALA ARG PHE LYS TYR ILE GLU GLN SEQRES 14 A 246 GLN ILE GLN GLU ARG ALA TYR ARG ASP GLU VAL PRO SER SEQRES 15 A 246 SER ALA THR ILE SER LEU GLU ASN SER TRP SER GLY LEU SEQRES 16 A 246 SER LYS GLN ILE GLN LEU ALA GLN GLY ASN ASN GLY VAL SEQRES 17 A 246 PHE ARG THR PRO THR VAL LEU VAL ASP SER LYS GLY ASN SEQRES 18 A 246 ARG VAL GLN ILE THR ASN VAL THR SER ASN VAL VAL THR SEQRES 19 A 246 SER ASN ILE GLN LEU LEU LEU ASN THR LYS ASN ILE HET NAG A 301 14 HET GOL A 302 6 HET RIB A 303 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM RIB ALPHA-D-RIBOFURANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN RIB ALPHA-D-RIBOSE; D-RIBOSE; RIBOSE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 GOL C3 H8 O3 FORMUL 4 RIB C5 H10 O5 FORMUL 5 HOH *185(H2 O) HELIX 1 AA1 ASP A 10 ALA A 24 1 15 HELIX 2 AA2 SER A 42 GLY A 45 5 4 HELIX 3 AA3 GLU A 85 SER A 92 1 8 HELIX 4 AA4 ASN A 110 GLY A 119 1 10 HELIX 5 AA5 PRO A 121 ILE A 125 5 5 HELIX 6 AA6 GLY A 128 LEU A 140 1 13 HELIX 7 AA7 ASP A 143 THR A 158 1 16 HELIX 8 AA8 THR A 158 PHE A 164 1 7 HELIX 9 AA9 PHE A 164 ARG A 174 1 11 HELIX 10 AB1 SER A 182 SER A 191 1 10 HELIX 11 AB2 SER A 191 ALA A 202 1 12 HELIX 12 AB3 SER A 230 SER A 235 1 6 HELIX 13 AB4 ASN A 242 ILE A 246 5 5 SHEET 1 AA1 6 VAL A 2 ARG A 5 0 SHEET 2 AA1 6 TYR A 47 PHE A 53 1 O HIS A 51 N VAL A 2 SHEET 3 AA1 6 THR A 59 ASP A 65 -1 O ILE A 60 N LEU A 52 SHEET 4 AA1 6 ILE A 71 ALA A 76 -1 O MET A 72 N ALA A 63 SHEET 5 AA1 6 THR A 79 PHE A 82 -1 O TYR A 81 N TYR A 74 SHEET 6 AA1 6 ARG A 101 THR A 104 1 O ILE A 103 N SER A 80 SHEET 1 AA2 2 HIS A 27 VAL A 31 0 SHEET 2 AA2 2 ILE A 34 LEU A 37 -1 O LEU A 36 N GLU A 29 SHEET 1 AA3 2 VAL A 208 VAL A 216 0 SHEET 2 AA3 2 ARG A 222 ASN A 227 -1 O VAL A 223 N LEU A 215 LINK ND2 ASN A 227 C1 NAG A 301 1555 1555 1.49 CRYST1 129.748 129.748 41.457 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007707 0.004450 0.000000 0.00000 SCALE2 0.000000 0.008900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024121 0.00000