HEADER TRANSFERASE 07-JAN-17 5WXJ TITLE APO EARP COMPND MOL_ID: 1; COMPND 2 MOLECULE: EARP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B / SEROTYPE SOURCE 3 15 (STRAIN H44/76); SOURCE 4 ORGANISM_TAXID: 909420; SOURCE 5 STRAIN: H44/76; SOURCE 6 GENE: NMH_0797; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28C KEYWDS GLYCOSYLTRANSFERASE, GT-B, EF-P, RHAMNOSYLATION, TRANSLATION KEYWDS 2 ELONGATION, DTDP-RHAMNOSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.SENGOKU,S.YOKOYAMA,T.YANAGISAWA REVDAT 2 04-APR-18 5WXJ 1 JRNL REVDAT 1 28-FEB-18 5WXJ 0 JRNL AUTH T.SENGOKU,T.SUZUKI,N.DOHMAE,C.WATANABE,T.HONMA,Y.HIKIDA, JRNL AUTH 2 Y.YAMAGUCHI,H.TAKAHASHI,S.YOKOYAMA,T.YANAGISAWA JRNL TITL STRUCTURAL BASIS OF PROTEIN ARGININE RHAMNOSYLATION BY JRNL TITL 2 GLYCOSYLTRANSFERASE EARP JRNL REF NAT. CHEM. BIOL. V. 14 368 2018 JRNL REFN ESSN 1552-4469 JRNL PMID 29440735 JRNL DOI 10.1038/S41589-018-0002-Y REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 77019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3767 - 4.3490 1.00 6152 151 0.1555 0.1718 REMARK 3 2 4.3490 - 3.4522 1.00 5899 145 0.1316 0.1642 REMARK 3 3 3.4522 - 3.0159 1.00 5832 143 0.1529 0.1884 REMARK 3 4 3.0159 - 2.7402 1.00 5774 142 0.1665 0.2240 REMARK 3 5 2.7402 - 2.5438 1.00 5779 143 0.1574 0.2190 REMARK 3 6 2.5438 - 2.3938 1.00 5761 142 0.1620 0.2126 REMARK 3 7 2.3938 - 2.2740 1.00 5762 141 0.1505 0.1858 REMARK 3 8 2.2740 - 2.1750 1.00 5702 140 0.1512 0.1868 REMARK 3 9 2.1750 - 2.0912 1.00 5717 140 0.1594 0.1969 REMARK 3 10 2.0912 - 2.0191 1.00 5693 140 0.1760 0.2444 REMARK 3 11 2.0191 - 1.9559 1.00 5724 142 0.1921 0.2582 REMARK 3 12 1.9559 - 1.9000 1.00 5718 140 0.2021 0.2477 REMARK 3 13 1.9000 - 1.8500 1.00 5660 137 0.2480 0.3174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 6391 REMARK 3 ANGLE : 1.363 8706 REMARK 3 CHIRALITY : 0.101 904 REMARK 3 PLANARITY : 0.010 1121 REMARK 3 DIHEDRAL : 5.294 5153 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.8348 75.5922 5.5046 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.1697 REMARK 3 T33: 0.2780 T12: 0.0117 REMARK 3 T13: 0.0407 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 1.9075 L22: 3.3647 REMARK 3 L33: 3.7866 L12: -0.4233 REMARK 3 L13: -0.3430 L23: 0.2111 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: 0.0990 S13: 0.2683 REMARK 3 S21: -0.1678 S22: 0.0607 S23: 0.0915 REMARK 3 S31: -0.2188 S32: -0.1528 S33: -0.0105 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7862 70.8546 17.6648 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.1855 REMARK 3 T33: 0.2279 T12: 0.0099 REMARK 3 T13: -0.0090 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.4251 L22: 4.3653 REMARK 3 L33: 1.9890 L12: -0.2336 REMARK 3 L13: -0.0859 L23: 1.9126 REMARK 3 S TENSOR REMARK 3 S11: -0.0557 S12: 0.0218 S13: 0.1076 REMARK 3 S21: 0.2460 S22: 0.0728 S23: -0.1064 REMARK 3 S31: 0.1474 S32: -0.1095 S33: -0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4850 100.3270 14.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.1712 T22: 0.1529 REMARK 3 T33: 0.1846 T12: 0.0126 REMARK 3 T13: 0.0500 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 1.2828 L22: 3.3268 REMARK 3 L33: 1.9008 L12: -0.1405 REMARK 3 L13: 0.3469 L23: -1.3752 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.0945 S13: 0.0399 REMARK 3 S21: -0.1166 S22: 0.0780 S23: -0.1520 REMARK 3 S31: 0.0131 S32: -0.0177 S33: -0.0553 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 291 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9104 87.9615 27.0538 REMARK 3 T TENSOR REMARK 3 T11: 0.1876 T22: 0.1450 REMARK 3 T33: 0.1469 T12: -0.0065 REMARK 3 T13: 0.0555 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 2.6938 L22: 2.6215 REMARK 3 L33: 1.0808 L12: -1.4807 REMARK 3 L13: 0.2535 L23: -0.0873 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: -0.2138 S13: 0.0015 REMARK 3 S21: 0.2435 S22: 0.0988 S23: 0.1266 REMARK 3 S31: -0.0652 S32: -0.0906 S33: -0.0933 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1676 58.2369 3.4388 REMARK 3 T TENSOR REMARK 3 T11: 0.1749 T22: 0.2431 REMARK 3 T33: 0.2096 T12: 0.0495 REMARK 3 T13: -0.0551 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.2883 L22: 3.5471 REMARK 3 L33: 3.7920 L12: -0.4273 REMARK 3 L13: 0.2994 L23: -0.0818 REMARK 3 S TENSOR REMARK 3 S11: 0.1334 S12: 0.1064 S13: 0.0132 REMARK 3 S21: -0.3964 S22: -0.0507 S23: 0.1368 REMARK 3 S31: 0.1620 S32: 0.0134 S33: -0.0729 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4892 36.1546 6.9156 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.1504 REMARK 3 T33: 0.1017 T12: -0.0152 REMARK 3 T13: -0.0032 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.6132 L22: 1.1748 REMARK 3 L33: 0.7768 L12: -0.1946 REMARK 3 L13: -0.0004 L23: 0.5329 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: 0.0028 S13: 0.0291 REMARK 3 S21: -0.0002 S22: -0.0024 S23: 0.0767 REMARK 3 S31: -0.0132 S32: -0.0024 S33: 0.0188 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300001852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.8-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77019 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 48.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-NAOH BUFFER (PH 6.8-7.5), REMARK 280 20% PEG3350, AND 0.2 M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.81100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 97.88700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.81100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 97.88700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 16 REMARK 465 ASN A 17 REMARK 465 PHE A 18 REMARK 465 GLY A 19 REMARK 465 LYS A 380 REMARK 465 ILE A 381 REMARK 465 ARG A 382 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ASP B 16 REMARK 465 ASN B 17 REMARK 465 PHE B 18 REMARK 465 GLY B 19 REMARK 465 GLN B 379 REMARK 465 LYS B 380 REMARK 465 ILE B 381 REMARK 465 ARG B 382 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 506 O HOH A 768 1.95 REMARK 500 O HOH B 781 O HOH B 878 2.16 REMARK 500 O HOH B 836 O HOH B 892 2.16 REMARK 500 OE1 GLU B 159 NH1 ARG B 162 2.19 REMARK 500 OE1 GLN A 341 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 12 CB CYS A 12 SG -0.137 REMARK 500 CYS B 12 CB CYS B 12 SG -0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 57 -179.73 -68.92 REMARK 500 THR A 90 32.75 -97.85 REMARK 500 CYS A 93 -167.59 -73.11 REMARK 500 ASN A 178 14.92 -145.98 REMARK 500 ALA A 240 -126.06 46.67 REMARK 500 PRO B 57 -176.37 -68.79 REMARK 500 SER B 189 148.74 -170.06 REMARK 500 ALA B 240 -136.79 52.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide BME B 402 and CYS B REMARK 800 53 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide BME B 403 and CYS B REMARK 800 158 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WXI RELATED DB: PDB REMARK 900 RELATED ID: 5WXK RELATED DB: PDB DBREF 5WXJ A 1 382 UNP E6MVV9 E6MVV9_NEIMH 1 382 DBREF 5WXJ B 1 382 UNP E6MVV9 E6MVV9_NEIMH 1 382 SEQRES 1 A 382 MET ASN THR PRO PRO PHE VAL CYS TRP ILE PHE CYS LYS SEQRES 2 A 382 VAL ILE ASP ASN PHE GLY ASP ILE GLY VAL SER TRP ARG SEQRES 3 A 382 LEU ALA ARG VAL LEU HIS ARG GLU LEU GLY TRP GLN VAL SEQRES 4 A 382 HIS LEU TRP THR ASP ASP VAL SER ALA LEU ARG ALA LEU SEQRES 5 A 382 CYS PRO ASP LEU PRO ASP VAL PRO CYS VAL HIS GLN ASP SEQRES 6 A 382 ILE HIS VAL ARG THR TRP HIS SER ASP ALA ALA ASP ILE SEQRES 7 A 382 ASP THR ALA PRO VAL PRO ASP VAL VAL ILE GLU THR PHE SEQRES 8 A 382 ALA CYS ASP LEU PRO GLU ASN VAL LEU HIS ILE ILE ARG SEQRES 9 A 382 ARG HIS LYS PRO LEU TRP LEU ASN TRP GLU TYR LEU SER SEQRES 10 A 382 ALA GLU GLU SER ASN GLU ARG LEU HIS LEU MET PRO SER SEQRES 11 A 382 PRO GLN GLU GLY VAL GLN LYS TYR PHE TRP PHE MET GLY SEQRES 12 A 382 PHE SER GLU LYS SER GLY GLY LEU ILE ARG GLU ARG ASP SEQRES 13 A 382 TYR CYS GLU ALA VAL ARG PHE ASP THR GLU ALA LEU ARG SEQRES 14 A 382 GLU ARG LEU MET LEU PRO GLU LYS ASN ALA SER GLU TRP SEQRES 15 A 382 LEU LEU PHE GLY TYR ARG SER ASP VAL TRP ALA LYS TRP SEQRES 16 A 382 LEU GLU MET TRP ARG GLN ALA GLY SER PRO MET THR LEU SEQRES 17 A 382 LEU LEU ALA GLY THR GLN ILE ILE ASP SER LEU LYS GLN SEQRES 18 A 382 SER GLY VAL ILE PRO GLN ASP ALA LEU GLN ASN ASP GLY SEQRES 19 A 382 ASP VAL PHE GLN THR ALA SER VAL ARG LEU VAL LYS ILE SEQRES 20 A 382 PRO PHE VAL PRO GLN GLN ASP PHE ASP GLN LEU LEU HIS SEQRES 21 A 382 LEU ALA ASP CYS ALA VAL ILE ARG GLY GLU ASP SER PHE SEQRES 22 A 382 VAL ARG ALA GLN LEU ALA GLY LYS PRO PHE PHE TRP HIS SEQRES 23 A 382 ILE TYR PRO GLN ASP GLU ASN VAL HIS LEU ASP LYS LEU SEQRES 24 A 382 HIS ALA PHE TRP ASP LYS ALA HIS GLY PHE TYR THR PRO SEQRES 25 A 382 GLU THR VAL SER ALA HIS ARG ARG LEU SER ASP ASP LEU SEQRES 26 A 382 ASN GLY GLY GLU ALA LEU SER ALA THR GLN ARG LEU GLU SEQRES 27 A 382 CYS TRP GLN THR LEU GLN GLN HIS GLN ASN GLY TRP ARG SEQRES 28 A 382 GLN GLY ALA GLU ASP TRP SER ARG TYR LEU PHE GLY GLN SEQRES 29 A 382 PRO SER ALA PRO GLU LYS LEU ALA ALA PHE VAL SER LYS SEQRES 30 A 382 HIS GLN LYS ILE ARG SEQRES 1 B 382 MET ASN THR PRO PRO PHE VAL CYS TRP ILE PHE CYS LYS SEQRES 2 B 382 VAL ILE ASP ASN PHE GLY ASP ILE GLY VAL SER TRP ARG SEQRES 3 B 382 LEU ALA ARG VAL LEU HIS ARG GLU LEU GLY TRP GLN VAL SEQRES 4 B 382 HIS LEU TRP THR ASP ASP VAL SER ALA LEU ARG ALA LEU SEQRES 5 B 382 CYS PRO ASP LEU PRO ASP VAL PRO CYS VAL HIS GLN ASP SEQRES 6 B 382 ILE HIS VAL ARG THR TRP HIS SER ASP ALA ALA ASP ILE SEQRES 7 B 382 ASP THR ALA PRO VAL PRO ASP VAL VAL ILE GLU THR PHE SEQRES 8 B 382 ALA CYS ASP LEU PRO GLU ASN VAL LEU HIS ILE ILE ARG SEQRES 9 B 382 ARG HIS LYS PRO LEU TRP LEU ASN TRP GLU TYR LEU SER SEQRES 10 B 382 ALA GLU GLU SER ASN GLU ARG LEU HIS LEU MET PRO SER SEQRES 11 B 382 PRO GLN GLU GLY VAL GLN LYS TYR PHE TRP PHE MET GLY SEQRES 12 B 382 PHE SER GLU LYS SER GLY GLY LEU ILE ARG GLU ARG ASP SEQRES 13 B 382 TYR CYS GLU ALA VAL ARG PHE ASP THR GLU ALA LEU ARG SEQRES 14 B 382 GLU ARG LEU MET LEU PRO GLU LYS ASN ALA SER GLU TRP SEQRES 15 B 382 LEU LEU PHE GLY TYR ARG SER ASP VAL TRP ALA LYS TRP SEQRES 16 B 382 LEU GLU MET TRP ARG GLN ALA GLY SER PRO MET THR LEU SEQRES 17 B 382 LEU LEU ALA GLY THR GLN ILE ILE ASP SER LEU LYS GLN SEQRES 18 B 382 SER GLY VAL ILE PRO GLN ASP ALA LEU GLN ASN ASP GLY SEQRES 19 B 382 ASP VAL PHE GLN THR ALA SER VAL ARG LEU VAL LYS ILE SEQRES 20 B 382 PRO PHE VAL PRO GLN GLN ASP PHE ASP GLN LEU LEU HIS SEQRES 21 B 382 LEU ALA ASP CYS ALA VAL ILE ARG GLY GLU ASP SER PHE SEQRES 22 B 382 VAL ARG ALA GLN LEU ALA GLY LYS PRO PHE PHE TRP HIS SEQRES 23 B 382 ILE TYR PRO GLN ASP GLU ASN VAL HIS LEU ASP LYS LEU SEQRES 24 B 382 HIS ALA PHE TRP ASP LYS ALA HIS GLY PHE TYR THR PRO SEQRES 25 B 382 GLU THR VAL SER ALA HIS ARG ARG LEU SER ASP ASP LEU SEQRES 26 B 382 ASN GLY GLY GLU ALA LEU SER ALA THR GLN ARG LEU GLU SEQRES 27 B 382 CYS TRP GLN THR LEU GLN GLN HIS GLN ASN GLY TRP ARG SEQRES 28 B 382 GLN GLY ALA GLU ASP TRP SER ARG TYR LEU PHE GLY GLN SEQRES 29 B 382 PRO SER ALA PRO GLU LYS LEU ALA ALA PHE VAL SER LYS SEQRES 30 B 382 HIS GLN LYS ILE ARG HET BME A 401 4 HET BME A 402 4 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET GOL A 408 6 HET SO4 B 401 5 HET BME B 402 4 HET BME B 403 4 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HET SO4 B 407 5 HET GOL B 408 6 HETNAM BME BETA-MERCAPTOETHANOL HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BME 4(C2 H6 O S) FORMUL 5 SO4 10(O4 S 2-) FORMUL 10 GOL 2(C3 H8 O3) FORMUL 19 HOH *724(H2 O) HELIX 1 AA1 ILE A 21 GLY A 36 1 16 HELIX 2 AA2 ASP A 45 CYS A 53 1 9 HELIX 3 AA3 PRO A 96 LYS A 107 1 12 HELIX 4 AA4 GLU A 119 HIS A 126 1 8 HELIX 5 AA5 ASP A 156 VAL A 161 1 6 HELIX 6 AA6 ASP A 164 LEU A 172 1 9 HELIX 7 AA7 ASP A 190 GLY A 203 1 14 HELIX 8 AA8 THR A 213 SER A 222 1 10 HELIX 9 AA9 PRO A 251 ALA A 262 1 12 HELIX 10 AB1 GLU A 270 GLY A 280 1 11 HELIX 11 AB2 GLN A 290 ASN A 293 5 4 HELIX 12 AB3 VAL A 294 HIS A 307 1 14 HELIX 13 AB4 GLY A 308 TYR A 310 5 3 HELIX 14 AB5 THR A 311 ASN A 326 1 16 HELIX 15 AB6 SER A 332 HIS A 346 1 15 HELIX 16 AB7 HIS A 346 GLY A 363 1 18 HELIX 17 AB8 SER A 366 HIS A 378 1 13 HELIX 18 AB9 ILE B 21 GLU B 34 1 14 HELIX 19 AC1 ASP B 45 CYS B 53 1 9 HELIX 20 AC2 PRO B 96 LYS B 107 1 12 HELIX 21 AC3 GLU B 119 HIS B 126 1 8 HELIX 22 AC4 ASP B 156 VAL B 161 1 6 HELIX 23 AC5 ASP B 164 LEU B 172 1 9 HELIX 24 AC6 ASP B 190 GLY B 203 1 14 HELIX 25 AC7 THR B 213 SER B 222 1 10 HELIX 26 AC8 PRO B 251 ALA B 262 1 12 HELIX 27 AC9 GLU B 270 GLY B 280 1 11 HELIX 28 AD1 GLN B 290 VAL B 294 5 5 HELIX 29 AD2 HIS B 295 HIS B 307 1 13 HELIX 30 AD3 GLY B 308 TYR B 310 5 3 HELIX 31 AD4 THR B 311 ASN B 326 1 16 HELIX 32 AD5 SER B 332 HIS B 346 1 15 HELIX 33 AD6 HIS B 346 GLY B 363 1 18 HELIX 34 AD7 SER B 366 HIS B 378 1 13 SHEET 1 AA1 3 CYS A 61 HIS A 63 0 SHEET 2 AA1 3 ILE A 66 HIS A 72 -1 O VAL A 68 N CYS A 61 SHEET 3 AA1 3 ALA A 75 ALA A 76 -1 O ALA A 75 N HIS A 72 SHEET 1 AA2 8 CYS A 61 HIS A 63 0 SHEET 2 AA2 8 ILE A 66 HIS A 72 -1 O VAL A 68 N CYS A 61 SHEET 3 AA2 8 GLN A 38 THR A 43 1 N VAL A 39 O HIS A 67 SHEET 4 AA2 8 VAL A 7 CYS A 12 1 N ILE A 10 O TRP A 42 SHEET 5 AA2 8 VAL A 86 GLU A 89 1 O ILE A 88 N TRP A 9 SHEET 6 AA2 8 LEU A 109 TRP A 113 1 O TRP A 113 N GLU A 89 SHEET 7 AA2 8 VAL A 135 TRP A 140 1 O TYR A 138 N ASN A 112 SHEET 8 AA2 8 PRO A 129 GLN A 132 -1 N GLN A 132 O VAL A 135 SHEET 1 AA3 6 VAL A 236 THR A 239 0 SHEET 2 AA3 6 VAL A 242 LYS A 246 -1 O VAL A 242 N THR A 239 SHEET 3 AA3 6 MET A 206 LEU A 210 1 N LEU A 210 O VAL A 245 SHEET 4 AA3 6 SER A 180 LEU A 184 1 N TRP A 182 O LEU A 209 SHEET 5 AA3 6 CYS A 264 ARG A 268 1 O VAL A 266 N LEU A 183 SHEET 6 AA3 6 PHE A 283 HIS A 286 1 O HIS A 286 N ILE A 267 SHEET 1 AA4 3 CYS B 61 HIS B 63 0 SHEET 2 AA4 3 ILE B 66 HIS B 72 -1 O VAL B 68 N CYS B 61 SHEET 3 AA4 3 ALA B 75 ALA B 76 -1 O ALA B 75 N HIS B 72 SHEET 1 AA5 8 CYS B 61 HIS B 63 0 SHEET 2 AA5 8 ILE B 66 HIS B 72 -1 O VAL B 68 N CYS B 61 SHEET 3 AA5 8 GLN B 38 THR B 43 1 N LEU B 41 O HIS B 67 SHEET 4 AA5 8 VAL B 7 CYS B 12 1 N ILE B 10 O TRP B 42 SHEET 5 AA5 8 VAL B 86 GLU B 89 1 O ILE B 88 N TRP B 9 SHEET 6 AA5 8 LEU B 109 TRP B 113 1 O LEU B 109 N VAL B 87 SHEET 7 AA5 8 VAL B 135 TRP B 140 1 O TYR B 138 N ASN B 112 SHEET 8 AA5 8 PRO B 129 GLN B 132 -1 N GLN B 132 O VAL B 135 SHEET 1 AA6 6 VAL B 236 THR B 239 0 SHEET 2 AA6 6 VAL B 242 LYS B 246 -1 O LEU B 244 N PHE B 237 SHEET 3 AA6 6 MET B 206 LEU B 210 1 N LEU B 210 O VAL B 245 SHEET 4 AA6 6 SER B 180 LEU B 184 1 N TRP B 182 O LEU B 209 SHEET 5 AA6 6 CYS B 264 ARG B 268 1 O VAL B 266 N LEU B 183 SHEET 6 AA6 6 PHE B 283 HIS B 286 1 O HIS B 286 N ILE B 267 LINK SG CYS A 53 S2 BME A 401 1555 1555 2.00 LINK SG CYS A 158 S2 BME A 402 1555 1555 1.99 LINK SG CYS B 53 S2 BME B 402 1555 1555 1.98 LINK SG CYS B 158 S2 BME B 403 1555 1555 2.00 CISPEP 1 VAL A 59 PRO A 60 0 6.84 CISPEP 2 VAL B 59 PRO B 60 0 8.25 SITE 1 AC1 5 TRP A 25 LEU A 52 CYS A 53 GLN A 64 SITE 2 AC1 5 GLN A 253 SITE 1 AC2 2 CYS A 158 ARG A 359 SITE 1 AC3 6 GLY A 212 THR A 213 GLN A 214 ARG A 268 SITE 2 AC3 6 HOH A 562 HOH A 711 SITE 1 AC4 5 HIS A 346 ASN A 348 GLY A 349 HOH A 526 SITE 2 AC4 5 HOH A 731 SITE 1 AC5 4 ASP A 20 TYR A 187 ARG A 268 HOH A 522 SITE 1 AC6 4 VAL A 46 ARG A 50 ASP A 58 VAL A 59 SITE 1 AC7 6 ARG A 200 THR A 239 ALA A 240 HOH A 505 SITE 2 AC7 6 HOH A 647 ARG B 200 SITE 1 AC8 7 PRO A 60 CYS A 61 THR A 80 HOH A 503 SITE 2 AC8 7 HOH A 546 HOH A 720 ASP B 164 SITE 1 AC9 5 ARG A 105 HIS A 106 HOH A 540 ARG B 33 SITE 2 AC9 5 GLN B 64 SITE 1 AD1 7 GLY B 212 THR B 213 GLN B 214 ARG B 268 SITE 2 AD1 7 HOH B 524 HOH B 607 HOH B 668 SITE 1 AD2 6 HIS B 346 ASN B 348 GLY B 349 HOH B 523 SITE 2 AD2 6 HOH B 556 HOH B 566 SITE 1 AD3 4 ASP B 20 PHE B 185 TYR B 187 ARG B 268 SITE 1 AD4 3 ARG B 50 ASP B 58 VAL B 59 SITE 1 AD5 8 SER B 180 TRP B 182 CYS B 264 GLN B 344 SITE 2 AD5 8 GLN B 347 TRP B 350 HOH B 576 HOH B 640 SITE 1 AD6 13 TRP B 25 ARG B 29 LEU B 49 ARG B 50 SITE 2 AD6 13 ALA B 51 LEU B 52 PRO B 54 ASP B 55 SITE 3 AD6 13 LEU B 56 HIS B 63 GLN B 64 GLN B 252 SITE 4 AD6 13 GLN B 253 SITE 1 AD7 8 ASP B 156 TYR B 157 GLU B 159 ALA B 160 SITE 2 AD7 8 VAL B 161 ARG B 162 HOH B 570 HOH B 704 CRYST1 97.622 195.774 46.396 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010244 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021554 0.00000