HEADER NUCLEAR PROTEIN 07-JAN-17 5WXL TITLE CRYSTAL STRUCTURE OF THE RRS1 AND RPF2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME BIOGENESIS PROTEIN RPF2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 19-288; COMPND 5 SYNONYM: RPF2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: REGULATOR OF RIBOSOME BIOSYNTHESIS; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: UNP RESIDUES 20-121; COMPND 11 SYNONYM: RRS1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 STRAIN: S288C; SOURCE 5 GENE: RPF2, YKR081C, YKR401; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 10 ORGANISM_TAXID: 559292; SOURCE 11 STRAIN: S288C; SOURCE 12 GENE: RRS1, YOR294W; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN COMPLEX, COMPONENTS OF 90S PRERIBOSOME, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.YE,S.ZHENG REVDAT 3 20-MAR-24 5WXL 1 REMARK REVDAT 2 28-JUN-17 5WXL 1 JRNL REVDAT 1 25-JAN-17 5WXL 0 JRNL AUTH Q.SUN,X.ZHU,J.QI,W.AN,P.LAN,D.TAN,R.CHEN,B.WANG,S.ZHENG, JRNL AUTH 2 C.ZHANG,X.CHEN,W.ZHANG,J.CHEN,M.Q.DONG,K.YE JRNL TITL MOLECULAR ARCHITECTURE OF THE 90S SMALL SUBUNIT PRE-RIBOSOME JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28244370 JRNL DOI 10.7554/ELIFE.22086 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11RC1_2513: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 64530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8056 - 5.3690 0.99 2901 126 0.1777 0.1745 REMARK 3 2 5.3690 - 4.2756 1.00 2767 153 0.1490 0.1501 REMARK 3 3 4.2756 - 3.7393 1.00 2697 162 0.1484 0.1893 REMARK 3 4 3.7393 - 3.3993 1.00 2715 133 0.1700 0.2001 REMARK 3 5 3.3993 - 3.1567 1.00 2690 148 0.1846 0.2123 REMARK 3 6 3.1567 - 2.9712 1.00 2655 142 0.1919 0.2338 REMARK 3 7 2.9712 - 2.8228 1.00 2732 96 0.2001 0.2198 REMARK 3 8 2.8228 - 2.7003 1.00 2653 157 0.1922 0.2378 REMARK 3 9 2.7003 - 2.5966 1.00 2652 146 0.1968 0.2525 REMARK 3 10 2.5966 - 2.5071 1.00 2673 135 0.1964 0.2564 REMARK 3 11 2.5071 - 2.4289 1.00 2667 128 0.1899 0.2281 REMARK 3 12 2.4289 - 2.3596 1.00 2637 139 0.1858 0.2307 REMARK 3 13 2.3596 - 2.2975 1.00 2604 159 0.1837 0.2373 REMARK 3 14 2.2975 - 2.2416 1.00 2634 143 0.1828 0.2191 REMARK 3 15 2.2416 - 2.1907 1.00 2656 141 0.1839 0.2272 REMARK 3 16 2.1907 - 2.1441 1.00 2629 129 0.1812 0.2284 REMARK 3 17 2.1441 - 2.1013 1.00 2606 147 0.1805 0.2094 REMARK 3 18 2.1013 - 2.0617 1.00 2609 165 0.1849 0.2381 REMARK 3 19 2.0617 - 2.0249 1.00 2649 137 0.1925 0.2168 REMARK 3 20 2.0249 - 1.9906 1.00 2575 148 0.1991 0.2130 REMARK 3 21 1.9906 - 1.9585 1.00 2589 165 0.2023 0.2411 REMARK 3 22 1.9585 - 1.9284 1.00 2683 132 0.2042 0.2699 REMARK 3 23 1.9284 - 1.9001 1.00 2588 138 0.2198 0.2957 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4964 REMARK 3 ANGLE : 0.866 6679 REMARK 3 CHIRALITY : 0.053 750 REMARK 3 PLANARITY : 0.005 859 REMARK 3 DIHEDRAL : 9.550 3091 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00903 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64639 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TRIMETHYLAMINE N-OXIDE, 0.1 M REMARK 280 TRIS-HCL, 20% PEG2000, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 179.27000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.63500 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 89.63500 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 179.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 18 REMARK 465 SER A 211 REMARK 465 ASP A 212 REMARK 465 GLN A 213 REMARK 465 GLY A 214 REMARK 465 GLY A 215 REMARK 465 LYS A 216 REMARK 465 ARG A 217 REMARK 465 PRO A 252 REMARK 465 LYS A 253 REMARK 465 GLN A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 256 REMARK 465 MET A 257 REMARK 465 LYS A 258 REMARK 465 THR A 259 REMARK 465 LYS A 260 REMARK 465 LYS A 261 REMARK 465 ASN A 262 REMARK 465 VAL A 263 REMARK 465 GLU A 264 REMARK 465 LEU A 265 REMARK 465 ASP A 266 REMARK 465 ILE A 267 REMARK 465 MET A 268 REMARK 465 GLY A 269 REMARK 465 ASP A 270 REMARK 465 LYS A 271 REMARK 465 LEU A 272 REMARK 465 GLY A 273 REMARK 465 ARG A 274 REMARK 465 ILE A 275 REMARK 465 HIS A 276 REMARK 465 MET A 277 REMARK 465 GLY A 278 REMARK 465 LYS A 279 REMARK 465 GLN A 280 REMARK 465 ASP A 281 REMARK 465 LEU A 282 REMARK 465 GLY A 283 REMARK 465 LYS A 284 REMARK 465 LEU A 285 REMARK 465 GLN A 286 REMARK 465 THR A 287 REMARK 465 ARG A 288 REMARK 465 THR B 74 REMARK 465 GLU B 75 REMARK 465 SER B 76 REMARK 465 VAL B 77 REMARK 465 GLY B 78 REMARK 465 GLY B 79 REMARK 465 THR B 80 REMARK 465 GLY B 81 REMARK 465 GLY B 82 REMARK 465 GLN B 83 REMARK 465 SER B 84 REMARK 465 SER B 85 REMARK 465 VAL B 86 REMARK 465 LYS B 107 REMARK 465 ALA B 108 REMARK 465 LYS B 109 REMARK 465 ALA B 110 REMARK 465 MET B 111 REMARK 465 THR B 112 REMARK 465 LYS B 113 REMARK 465 TRP B 114 REMARK 465 GLU B 115 REMARK 465 LYS B 116 REMARK 465 PHE B 117 REMARK 465 ALA B 118 REMARK 465 ALA B 119 REMARK 465 LYS B 120 REMARK 465 LYS B 121 REMARK 465 SER C 18 REMARK 465 ARG C 19 REMARK 465 GLU C 20 REMARK 465 ALA C 21 REMARK 465 LYS C 22 REMARK 465 LEU C 23 REMARK 465 VAL C 24 REMARK 465 GLU C 25 REMARK 465 ASP C 212 REMARK 465 GLN C 213 REMARK 465 GLY C 214 REMARK 465 PRO C 252 REMARK 465 LYS C 253 REMARK 465 GLN C 254 REMARK 465 LEU C 255 REMARK 465 GLU C 256 REMARK 465 MET C 257 REMARK 465 LYS C 258 REMARK 465 THR C 259 REMARK 465 LYS C 260 REMARK 465 LYS C 261 REMARK 465 ASN C 262 REMARK 465 VAL C 263 REMARK 465 GLU C 264 REMARK 465 LEU C 265 REMARK 465 ASP C 266 REMARK 465 ILE C 267 REMARK 465 MET C 268 REMARK 465 GLY C 269 REMARK 465 ASP C 270 REMARK 465 LYS C 271 REMARK 465 LEU C 272 REMARK 465 GLY C 273 REMARK 465 ARG C 274 REMARK 465 ILE C 275 REMARK 465 HIS C 276 REMARK 465 MET C 277 REMARK 465 GLY C 278 REMARK 465 LYS C 279 REMARK 465 GLN C 280 REMARK 465 ASP C 281 REMARK 465 LEU C 282 REMARK 465 GLY C 283 REMARK 465 LYS C 284 REMARK 465 LEU C 285 REMARK 465 GLN C 286 REMARK 465 THR C 287 REMARK 465 ARG C 288 REMARK 465 THR D 74 REMARK 465 GLU D 75 REMARK 465 SER D 76 REMARK 465 VAL D 77 REMARK 465 GLY D 78 REMARK 465 GLY D 79 REMARK 465 THR D 80 REMARK 465 GLY D 81 REMARK 465 GLY D 82 REMARK 465 GLN D 83 REMARK 465 SER D 84 REMARK 465 SER D 85 REMARK 465 VAL D 86 REMARK 465 LYS D 107 REMARK 465 ALA D 108 REMARK 465 LYS D 109 REMARK 465 ALA D 110 REMARK 465 MET D 111 REMARK 465 THR D 112 REMARK 465 LYS D 113 REMARK 465 TRP D 114 REMARK 465 GLU D 115 REMARK 465 LYS D 116 REMARK 465 PHE D 117 REMARK 465 ALA D 118 REMARK 465 ALA D 119 REMARK 465 LYS D 120 REMARK 465 LYS D 121 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 62 O HOH A 301 1.30 REMARK 500 OE1 GLU B 48 O HOH B 201 1.47 REMARK 500 OE1 GLU C 70 O HOH C 301 1.82 REMARK 500 O HOH A 302 O HOH A 484 1.90 REMARK 500 O HOH B 201 O HOH B 228 2.00 REMARK 500 NZ LYS A 129 O HOH A 302 2.04 REMARK 500 O HOH B 216 O HOH B 236 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 220 O HOH C 301 3565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 56 48.62 -95.41 REMARK 500 ASP A 71 97.99 -160.31 REMARK 500 TYR A 111 -67.48 -94.34 REMARK 500 ASP C 56 44.98 -99.43 REMARK 500 TYR C 111 -63.22 -95.98 REMARK 500 GLN C 179 -61.75 -121.82 REMARK 500 LYS C 216 0.38 -63.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 5WXL A 19 288 UNP P36160 RPF2_YEAST 19 288 DBREF 5WXL B 20 121 UNP Q08746 RRS1_YEAST 20 121 DBREF 5WXL C 19 288 UNP P36160 RPF2_YEAST 19 288 DBREF 5WXL D 20 121 UNP Q08746 RRS1_YEAST 20 121 SEQADV 5WXL SER A 18 UNP P36160 EXPRESSION TAG SEQADV 5WXL GLY B 16 UNP Q08746 EXPRESSION TAG SEQADV 5WXL PRO B 17 UNP Q08746 EXPRESSION TAG SEQADV 5WXL GLU B 18 UNP Q08746 EXPRESSION TAG SEQADV 5WXL ALA B 19 UNP Q08746 EXPRESSION TAG SEQADV 5WXL SER C 18 UNP P36160 EXPRESSION TAG SEQADV 5WXL GLY D 16 UNP Q08746 EXPRESSION TAG SEQADV 5WXL PRO D 17 UNP Q08746 EXPRESSION TAG SEQADV 5WXL GLU D 18 UNP Q08746 EXPRESSION TAG SEQADV 5WXL ALA D 19 UNP Q08746 EXPRESSION TAG SEQRES 1 A 271 SER ARG GLU ALA LYS LEU VAL GLU ASN VAL LYS GLN ALA SEQRES 2 A 271 LEU PHE ILE PRO GLY GLN SER CYS ASN LYS ASN LEU HIS SEQRES 3 A 271 ASP ILE MET VAL ASP LEU SER ALA LEU LYS LYS PRO ASP SEQRES 4 A 271 MET LYS ARG PHE ASN ARG LYS ASN ASP ILE HIS PRO PHE SEQRES 5 A 271 GLU ASP MET SER PRO LEU GLU PHE PHE SER GLU LYS ASN SEQRES 6 A 271 ASP CYS SER LEU MET VAL LEU MET THR SER SER LYS LYS SEQRES 7 A 271 ARG LYS ASN ASN MET THR PHE ILE ARG THR PHE GLY TYR SEQRES 8 A 271 LYS ILE TYR ASP MET ILE GLU LEU MET VAL ALA ASP ASN SEQRES 9 A 271 PHE LYS LEU LEU SER ASP PHE LYS LYS LEU THR PHE THR SEQRES 10 A 271 VAL GLY LEU LYS PRO MET PHE THR PHE GLN GLY ALA ALA SEQRES 11 A 271 PHE ASP THR HIS PRO VAL TYR LYS GLN ILE LYS SER LEU SEQRES 12 A 271 PHE LEU ASP PHE PHE ARG GLY GLU SER THR ASP LEU GLN SEQRES 13 A 271 ASP VAL ALA GLY LEU GLN HIS VAL ILE SER MET THR ILE SEQRES 14 A 271 GLN GLY ASP PHE GLN ASP GLY GLU PRO LEU PRO ASN VAL SEQRES 15 A 271 LEU PHE ARG VAL TYR LYS LEU LYS SER TYR LYS SER ASP SEQRES 16 A 271 GLN GLY GLY LYS ARG LEU PRO ARG ILE GLU LEU VAL GLU SEQRES 17 A 271 ILE GLY PRO ARG LEU ASP PHE LYS ILE GLY ARG ILE HIS SEQRES 18 A 271 THR PRO SER PRO ASP MET VAL THR GLU ALA HIS LYS LYS SEQRES 19 A 271 PRO LYS GLN LEU GLU MET LYS THR LYS LYS ASN VAL GLU SEQRES 20 A 271 LEU ASP ILE MET GLY ASP LYS LEU GLY ARG ILE HIS MET SEQRES 21 A 271 GLY LYS GLN ASP LEU GLY LYS LEU GLN THR ARG SEQRES 1 B 106 GLY PRO GLU ALA VAL TYR ASP LEU GLY ASN LEU ALA ALA SEQRES 2 B 106 PHE ASP SER ASN VAL LEU ASP LYS ASN ASP LEU ASP SER SEQRES 3 B 106 SER ASN ALA ARG ARG GLU GLU LYS ILE LYS SER LEU THR SEQRES 4 B 106 ARG ASP ASN VAL GLN LEU LEU ILE ASN GLN LEU LEU SER SEQRES 5 B 106 LEU PRO MET LYS THR THR THR GLU SER VAL GLY GLY THR SEQRES 6 B 106 GLY GLY GLN SER SER VAL MET THR LEU LEU GLN LEU PRO SEQRES 7 B 106 ASP PRO THR THR ASP LEU PRO ARG GLU LYS PRO LEU PRO SEQRES 8 B 106 LYS ALA LYS ALA MET THR LYS TRP GLU LYS PHE ALA ALA SEQRES 9 B 106 LYS LYS SEQRES 1 C 271 SER ARG GLU ALA LYS LEU VAL GLU ASN VAL LYS GLN ALA SEQRES 2 C 271 LEU PHE ILE PRO GLY GLN SER CYS ASN LYS ASN LEU HIS SEQRES 3 C 271 ASP ILE MET VAL ASP LEU SER ALA LEU LYS LYS PRO ASP SEQRES 4 C 271 MET LYS ARG PHE ASN ARG LYS ASN ASP ILE HIS PRO PHE SEQRES 5 C 271 GLU ASP MET SER PRO LEU GLU PHE PHE SER GLU LYS ASN SEQRES 6 C 271 ASP CYS SER LEU MET VAL LEU MET THR SER SER LYS LYS SEQRES 7 C 271 ARG LYS ASN ASN MET THR PHE ILE ARG THR PHE GLY TYR SEQRES 8 C 271 LYS ILE TYR ASP MET ILE GLU LEU MET VAL ALA ASP ASN SEQRES 9 C 271 PHE LYS LEU LEU SER ASP PHE LYS LYS LEU THR PHE THR SEQRES 10 C 271 VAL GLY LEU LYS PRO MET PHE THR PHE GLN GLY ALA ALA SEQRES 11 C 271 PHE ASP THR HIS PRO VAL TYR LYS GLN ILE LYS SER LEU SEQRES 12 C 271 PHE LEU ASP PHE PHE ARG GLY GLU SER THR ASP LEU GLN SEQRES 13 C 271 ASP VAL ALA GLY LEU GLN HIS VAL ILE SER MET THR ILE SEQRES 14 C 271 GLN GLY ASP PHE GLN ASP GLY GLU PRO LEU PRO ASN VAL SEQRES 15 C 271 LEU PHE ARG VAL TYR LYS LEU LYS SER TYR LYS SER ASP SEQRES 16 C 271 GLN GLY GLY LYS ARG LEU PRO ARG ILE GLU LEU VAL GLU SEQRES 17 C 271 ILE GLY PRO ARG LEU ASP PHE LYS ILE GLY ARG ILE HIS SEQRES 18 C 271 THR PRO SER PRO ASP MET VAL THR GLU ALA HIS LYS LYS SEQRES 19 C 271 PRO LYS GLN LEU GLU MET LYS THR LYS LYS ASN VAL GLU SEQRES 20 C 271 LEU ASP ILE MET GLY ASP LYS LEU GLY ARG ILE HIS MET SEQRES 21 C 271 GLY LYS GLN ASP LEU GLY LYS LEU GLN THR ARG SEQRES 1 D 106 GLY PRO GLU ALA VAL TYR ASP LEU GLY ASN LEU ALA ALA SEQRES 2 D 106 PHE ASP SER ASN VAL LEU ASP LYS ASN ASP LEU ASP SER SEQRES 3 D 106 SER ASN ALA ARG ARG GLU GLU LYS ILE LYS SER LEU THR SEQRES 4 D 106 ARG ASP ASN VAL GLN LEU LEU ILE ASN GLN LEU LEU SER SEQRES 5 D 106 LEU PRO MET LYS THR THR THR GLU SER VAL GLY GLY THR SEQRES 6 D 106 GLY GLY GLN SER SER VAL MET THR LEU LEU GLN LEU PRO SEQRES 7 D 106 ASP PRO THR THR ASP LEU PRO ARG GLU LYS PRO LEU PRO SEQRES 8 D 106 LYS ALA LYS ALA MET THR LYS TRP GLU LYS PHE ALA ALA SEQRES 9 D 106 LYS LYS FORMUL 5 HOH *600(H2 O) HELIX 1 AA1 ASN A 39 LYS A 54 1 16 HELIX 2 AA2 MET A 72 ASP A 83 1 12 HELIX 3 AA3 LEU A 124 PHE A 128 5 5 HELIX 4 AA4 ALA A 146 HIS A 151 1 6 HELIX 5 AA5 HIS A 151 ARG A 166 1 16 HELIX 6 AA6 ALA A 176 LEU A 178 5 3 HELIX 7 AA7 SER A 241 HIS A 249 1 9 HELIX 8 AA8 LEU B 23 ASN B 25 5 3 HELIX 9 AA9 ASP B 35 ASP B 40 1 6 HELIX 10 AB1 ARG B 45 LEU B 66 1 22 HELIX 11 AB2 ASN C 39 LEU C 52 1 14 HELIX 12 AB3 MET C 72 ASP C 83 1 12 HELIX 13 AB4 LEU C 124 PHE C 128 5 5 HELIX 14 AB5 ALA C 146 HIS C 151 1 6 HELIX 15 AB6 HIS C 151 ARG C 166 1 16 HELIX 16 AB7 ALA C 176 LEU C 178 5 3 HELIX 17 AB8 SER C 241 HIS C 249 1 9 HELIX 18 AB9 LEU D 23 ASN D 25 5 3 HELIX 19 AC1 ASP D 35 ASP D 40 1 6 HELIX 20 AC2 ARG D 45 SER D 67 1 23 SHEET 1 AA1 8 MET A 57 ARG A 59 0 SHEET 2 AA1 8 ALA A 30 PRO A 34 1 N ALA A 30 O LYS A 58 SHEET 3 AA1 8 LEU A 86 THR A 91 1 O VAL A 88 N ILE A 33 SHEET 4 AA1 8 ASN A 99 PHE A 106 -1 O ILE A 103 N MET A 87 SHEET 5 AA1 8 LYS A 109 VAL A 118 -1 O TYR A 111 N ARG A 104 SHEET 6 AA1 8 LEU A 230 HIS A 238 -1 O GLY A 235 N GLU A 115 SHEET 7 AA1 8 VAL A 199 TYR A 209 -1 N VAL A 199 O PHE A 232 SHEET 8 AA1 8 ARG A 220 GLU A 225 -1 O GLU A 222 N LYS A 207 SHEET 1 AA211 MET A 57 ARG A 59 0 SHEET 2 AA211 ALA A 30 PRO A 34 1 N ALA A 30 O LYS A 58 SHEET 3 AA211 LEU A 86 THR A 91 1 O VAL A 88 N ILE A 33 SHEET 4 AA211 ASN A 99 PHE A 106 -1 O ILE A 103 N MET A 87 SHEET 5 AA211 LYS A 109 VAL A 118 -1 O TYR A 111 N ARG A 104 SHEET 6 AA211 LEU A 230 HIS A 238 -1 O GLY A 235 N GLU A 115 SHEET 7 AA211 VAL A 199 TYR A 209 -1 N VAL A 199 O PHE A 232 SHEET 8 AA211 HIS A 180 ILE A 186 -1 N THR A 185 O LEU A 200 SHEET 9 AA211 MET A 140 GLN A 144 1 N MET A 140 O ILE A 182 SHEET 10 AA211 ALA B 27 ASP B 30 1 O ASP B 30 N PHE A 143 SHEET 11 AA211 VAL B 20 ASP B 22 -1 N VAL B 20 O PHE B 29 SHEET 1 AA3 3 LEU A 172 ASP A 174 0 SHEET 2 AA3 3 LEU B 89 GLN B 91 -1 O LEU B 90 N GLN A 173 SHEET 3 AA3 3 MET B 70 LYS B 71 -1 N LYS B 71 O LEU B 89 SHEET 1 AA4 8 MET C 57 ARG C 59 0 SHEET 2 AA4 8 ALA C 30 PRO C 34 1 N ALA C 30 O LYS C 58 SHEET 3 AA4 8 LEU C 86 THR C 91 1 O VAL C 88 N ILE C 33 SHEET 4 AA4 8 ASN C 99 PHE C 106 -1 O ILE C 103 N MET C 87 SHEET 5 AA4 8 LYS C 109 VAL C 118 -1 O TYR C 111 N ARG C 104 SHEET 6 AA4 8 LEU C 230 HIS C 238 -1 O GLY C 235 N GLU C 115 SHEET 7 AA4 8 VAL C 199 LEU C 206 -1 N PHE C 201 O LEU C 230 SHEET 8 AA4 8 LEU C 223 GLU C 225 -1 O VAL C 224 N LYS C 205 SHEET 1 AA511 MET C 57 ARG C 59 0 SHEET 2 AA511 ALA C 30 PRO C 34 1 N ALA C 30 O LYS C 58 SHEET 3 AA511 LEU C 86 THR C 91 1 O VAL C 88 N ILE C 33 SHEET 4 AA511 ASN C 99 PHE C 106 -1 O ILE C 103 N MET C 87 SHEET 5 AA511 LYS C 109 VAL C 118 -1 O TYR C 111 N ARG C 104 SHEET 6 AA511 LEU C 230 HIS C 238 -1 O GLY C 235 N GLU C 115 SHEET 7 AA511 VAL C 199 LEU C 206 -1 N PHE C 201 O LEU C 230 SHEET 8 AA511 HIS C 180 ILE C 186 -1 N THR C 185 O LEU C 200 SHEET 9 AA511 MET C 140 GLN C 144 1 N MET C 140 O ILE C 182 SHEET 10 AA511 ALA D 27 ASP D 30 1 O ASP D 30 N PHE C 143 SHEET 11 AA511 VAL D 20 ASP D 22 -1 N VAL D 20 O PHE D 29 SHEET 1 AA6 3 LEU C 172 ASP C 174 0 SHEET 2 AA6 3 LEU D 89 GLN D 91 -1 O LEU D 90 N GLN C 173 SHEET 3 AA6 3 MET D 70 LYS D 71 -1 N LYS D 71 O LEU D 89 CISPEP 1 LYS A 54 PRO A 55 0 2.57 CISPEP 2 GLY A 227 PRO A 228 0 -2.67 CISPEP 3 LYS C 54 PRO C 55 0 5.38 CISPEP 4 GLY C 227 PRO C 228 0 -2.62 CRYST1 71.791 71.791 268.905 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013929 0.008042 0.000000 0.00000 SCALE2 0.000000 0.016084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003719 0.00000