HEADER TRANSPORT PROTEIN/UNKNOWN FUNCTION 10-JAN-17 5WY2 TITLE HUMAN SNX5 PX DOMAIN IN COMPLEX WITH CHLAMYDIA INCE C TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTING NEXIN-5; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 20-180; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INCE; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: UNP RESIDUES 111-131; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SNX5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: CHLAMYDIA TRACHOMATIS; SOURCE 12 ORGANISM_TAXID: 813 KEYWDS COMPLEX, INCE, PX DOMAIN, SNX5, TRANSPORT PROTEIN-UNKNOWN FUNCTION KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.SUN,X.YONG,D.JIA REVDAT 3 22-NOV-23 5WY2 1 REMARK REVDAT 2 25-DEC-19 5WY2 1 JRNL REVDAT 1 22-NOV-17 5WY2 0 JRNL AUTH Q.SUN,X.YONG,X.SUN,F.YANG,Z.DAI,Y.GONG,L.ZHOU,X.ZHANG,D.NIU, JRNL AUTH 2 L.DAI,J.J.LIU,D.JIA JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO SORTING NEXIN 5/6 JRNL TITL 2 INTERACTION WITH BACTERIAL EFFECTOR INCE. JRNL REF SIGNAL TRANSDUCT TARGET THER V. 2 17030 2017 JRNL REFN ISSN 2095-9907 JRNL PMID 29263922 JRNL DOI 10.1038/SIGTRANS.2017.30 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 26308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1347 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1807 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.95000 REMARK 3 B12 (A**2) : -0.24000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : 0.31000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.376 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2715 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2513 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3671 ; 1.587 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5862 ; 0.950 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 324 ; 5.801 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;37.966 ;24.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;16.090 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.642 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2954 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 540 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1311 ; 1.664 ; 2.614 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1310 ; 1.664 ; 2.613 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1630 ; 2.864 ; 3.894 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1631 ; 2.863 ; 3.896 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 1.488 ; 2.734 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1405 ; 1.487 ; 2.735 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2042 ; 2.487 ; 4.003 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3080 ; 5.240 ;30.811 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3079 ; 5.238 ;30.807 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 28 176 C 28 176 8826 0.09 0.05 REMARK 3 2 B 111 131 D 111 131 934 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 176 REMARK 3 RESIDUE RANGE : A 201 A 320 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9599 0.0301 0.1713 REMARK 3 T TENSOR REMARK 3 T11: 0.0789 T22: 0.0710 REMARK 3 T33: 0.1080 T12: -0.0079 REMARK 3 T13: 0.0641 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.8461 L22: 3.9039 REMARK 3 L33: 4.3399 L12: 0.5638 REMARK 3 L13: -1.5067 L23: 0.7186 REMARK 3 S TENSOR REMARK 3 S11: 0.0331 S12: -0.3617 S13: -0.1797 REMARK 3 S21: 0.5305 S22: -0.1063 S23: 0.3021 REMARK 3 S31: 0.0536 S32: -0.2161 S33: 0.0732 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 111 B 131 REMARK 3 RESIDUE RANGE : B 201 B 203 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4293 4.4561 14.8108 REMARK 3 T TENSOR REMARK 3 T11: 0.1724 T22: 0.1719 REMARK 3 T33: 0.0731 T12: -0.0040 REMARK 3 T13: 0.0101 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 9.2764 L22: 2.5502 REMARK 3 L33: 0.5955 L12: 0.5360 REMARK 3 L13: -1.1282 L23: 0.1802 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: -0.1698 S13: 0.1678 REMARK 3 S21: 0.0592 S22: -0.0286 S23: -0.0499 REMARK 3 S31: 0.0287 S32: 0.0051 S33: 0.0456 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 28 C 176 REMARK 3 RESIDUE RANGE : C 201 C 317 REMARK 3 ORIGIN FOR THE GROUP (A): 16.5625 -17.4593 -26.8872 REMARK 3 T TENSOR REMARK 3 T11: 0.1649 T22: 0.0542 REMARK 3 T33: 0.1464 T12: -0.0052 REMARK 3 T13: 0.0428 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 3.1934 L22: 3.4082 REMARK 3 L33: 5.1149 L12: -0.2265 REMARK 3 L13: 1.7846 L23: 0.8379 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: 0.2717 S13: 0.0674 REMARK 3 S21: -0.6062 S22: -0.1410 S23: 0.2157 REMARK 3 S31: -0.1045 S32: -0.1782 S33: 0.1983 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 111 D 131 REMARK 3 RESIDUE RANGE : D 201 D 205 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1853 -22.2012 -39.9294 REMARK 3 T TENSOR REMARK 3 T11: 0.2877 T22: 0.2209 REMARK 3 T33: 0.0798 T12: 0.0187 REMARK 3 T13: 0.0111 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 14.5931 L22: 5.3889 REMARK 3 L33: 3.2004 L12: -1.5147 REMARK 3 L13: 2.5334 L23: -0.4159 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.6571 S13: -0.4801 REMARK 3 S21: -0.0803 S22: -0.0190 S23: -0.1376 REMARK 3 S31: -0.0474 S32: 0.0868 S33: -0.0011 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NONIUS KAPPA CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL-2000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27655 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.85900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3HPC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 ACETATE PH 4.6, 30% W/V POLYETHYLENE GLYCOL 4000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 VAL A 21 REMARK 465 SER A 22 REMARK 465 VAL A 23 REMARK 465 ASP A 24 REMARK 465 LEU A 25 REMARK 465 ASN A 26 REMARK 465 VAL A 27 REMARK 465 GLY A 110 REMARK 465 GLU A 111 REMARK 465 GLY A 112 REMARK 465 GLU A 113 REMARK 465 GLY A 114 REMARK 465 SER A 115 REMARK 465 MET A 116 REMARK 465 THR A 117 REMARK 465 LYS A 118 REMARK 465 GLU A 119 REMARK 465 GLU A 120 REMARK 465 LYS A 177 REMARK 465 ASN A 178 REMARK 465 THR A 179 REMARK 465 LYS A 180 REMARK 465 GLY C 18 REMARK 465 GLY C 19 REMARK 465 SER C 20 REMARK 465 VAL C 21 REMARK 465 SER C 22 REMARK 465 VAL C 23 REMARK 465 ASP C 24 REMARK 465 LEU C 25 REMARK 465 ASN C 26 REMARK 465 VAL C 27 REMARK 465 LYS C 177 REMARK 465 ASN C 178 REMARK 465 THR C 179 REMARK 465 LYS C 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 176 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 42 -108.97 46.30 REMARK 500 ASP A 169 49.70 -95.69 REMARK 500 LYS B 120 -106.88 91.85 REMARK 500 ASN B 121 -72.11 -86.63 REMARK 500 ARG C 42 -107.91 49.28 REMARK 500 ASP C 169 57.57 -100.72 REMARK 500 SER C 173 -71.52 -24.51 REMARK 500 ASN D 121 -84.45 47.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 5WY2 A 20 180 UNP Q9Y5X3 SNX5_HUMAN 20 180 DBREF 5WY2 B 111 131 UNP B7SCI5 B7SCI5_CHLTH 111 131 DBREF 5WY2 C 20 180 UNP Q9Y5X3 SNX5_HUMAN 20 180 DBREF 5WY2 D 111 131 UNP B7SCI5 B7SCI5_CHLTH 111 131 SEQADV 5WY2 GLY A 18 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5WY2 GLY A 19 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5WY2 SER A 56 UNP Q9Y5X3 PRO 56 CONFLICT SEQADV 5WY2 THR A 80 UNP Q9Y5X3 ILE 80 CONFLICT SEQADV 5WY2 THR A 142 UNP Q9Y5X3 SER 142 CONFLICT SEQADV 5WY2 GLY C 18 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5WY2 GLY C 19 UNP Q9Y5X3 EXPRESSION TAG SEQADV 5WY2 SER C 56 UNP Q9Y5X3 PRO 56 CONFLICT SEQADV 5WY2 THR C 80 UNP Q9Y5X3 ILE 80 CONFLICT SEQADV 5WY2 THR C 142 UNP Q9Y5X3 SER 142 CONFLICT SEQRES 1 A 163 GLY GLY SER VAL SER VAL ASP LEU ASN VAL ASP PRO SER SEQRES 2 A 163 LEU GLN ILE ASP ILE PRO ASP ALA LEU SER GLU ARG ASP SEQRES 3 A 163 LYS VAL LYS PHE THR VAL HIS THR LYS THR THR LEU SER SEQRES 4 A 163 THR PHE GLN SER PRO GLU PHE SER VAL THR ARG GLN HIS SEQRES 5 A 163 GLU ASP PHE VAL TRP LEU HIS ASP THR LEU THR GLU THR SEQRES 6 A 163 THR ASP TYR ALA GLY LEU ILE ILE PRO PRO ALA PRO THR SEQRES 7 A 163 LYS PRO ASP PHE ASP GLY PRO ARG GLU LYS MET GLN LYS SEQRES 8 A 163 LEU GLY GLU GLY GLU GLY SER MET THR LYS GLU GLU PHE SEQRES 9 A 163 ALA LYS MET LYS GLN GLU LEU GLU ALA GLU TYR LEU ALA SEQRES 10 A 163 VAL PHE LYS LYS THR VAL SER THR HIS GLU VAL PHE LEU SEQRES 11 A 163 GLN ARG LEU SER SER HIS PRO VAL LEU SER LYS ASP ARG SEQRES 12 A 163 ASN PHE HIS VAL PHE LEU GLU TYR ASP GLN ASP LEU SER SEQRES 13 A 163 VAL ARG ARG LYS ASN THR LYS SEQRES 1 B 21 GLY PRO ALA VAL GLN PHE PHE LYS GLY LYS ASN GLY SER SEQRES 2 B 21 ALA ASP GLN VAL ILE LEU VAL THR SEQRES 1 C 163 GLY GLY SER VAL SER VAL ASP LEU ASN VAL ASP PRO SER SEQRES 2 C 163 LEU GLN ILE ASP ILE PRO ASP ALA LEU SER GLU ARG ASP SEQRES 3 C 163 LYS VAL LYS PHE THR VAL HIS THR LYS THR THR LEU SER SEQRES 4 C 163 THR PHE GLN SER PRO GLU PHE SER VAL THR ARG GLN HIS SEQRES 5 C 163 GLU ASP PHE VAL TRP LEU HIS ASP THR LEU THR GLU THR SEQRES 6 C 163 THR ASP TYR ALA GLY LEU ILE ILE PRO PRO ALA PRO THR SEQRES 7 C 163 LYS PRO ASP PHE ASP GLY PRO ARG GLU LYS MET GLN LYS SEQRES 8 C 163 LEU GLY GLU GLY GLU GLY SER MET THR LYS GLU GLU PHE SEQRES 9 C 163 ALA LYS MET LYS GLN GLU LEU GLU ALA GLU TYR LEU ALA SEQRES 10 C 163 VAL PHE LYS LYS THR VAL SER THR HIS GLU VAL PHE LEU SEQRES 11 C 163 GLN ARG LEU SER SER HIS PRO VAL LEU SER LYS ASP ARG SEQRES 12 C 163 ASN PHE HIS VAL PHE LEU GLU TYR ASP GLN ASP LEU SER SEQRES 13 C 163 VAL ARG ARG LYS ASN THR LYS SEQRES 1 D 21 GLY PRO ALA VAL GLN PHE PHE LYS GLY LYS ASN GLY SER SEQRES 2 D 21 ALA ASP GLN VAL ILE LEU VAL THR FORMUL 5 HOH *245(H2 O) HELIX 1 AA1 HIS A 69 GLU A 81 1 13 HELIX 2 AA2 THR A 82 ALA A 86 5 5 HELIX 3 AA3 PHE A 99 LEU A 109 1 11 HELIX 4 AA4 ALA A 122 HIS A 153 1 32 HELIX 5 AA5 VAL A 155 LYS A 158 5 4 HELIX 6 AA6 ASP A 159 TYR A 168 1 10 HELIX 7 AA7 ASP A 171 ARG A 176 1 6 HELIX 8 AA8 HIS C 69 GLU C 81 1 13 HELIX 9 AA9 THR C 82 ALA C 86 5 5 HELIX 10 AB1 PHE C 99 GLY C 112 1 14 HELIX 11 AB2 GLU C 113 SER C 115 5 3 HELIX 12 AB3 THR C 117 SER C 152 1 36 HELIX 13 AB4 VAL C 155 LYS C 158 5 4 HELIX 14 AB5 ASP C 159 TYR C 168 1 10 SHEET 1 AA1 3 LEU A 31 ASP A 34 0 SHEET 2 AA1 3 LYS A 44 THR A 53 -1 O HIS A 50 N ASP A 34 SHEET 3 AA1 3 GLU A 62 GLN A 68 -1 O ARG A 67 N PHE A 47 SHEET 1 AA2 5 LEU A 31 ASP A 34 0 SHEET 2 AA2 5 LYS A 44 THR A 53 -1 O HIS A 50 N ASP A 34 SHEET 3 AA2 5 ASP A 37 GLU A 41 -1 N LEU A 39 O LYS A 46 SHEET 4 AA2 5 ALA B 113 PHE B 117 -1 O PHE B 116 N ALA A 38 SHEET 5 AA2 5 GLN B 126 VAL B 130 -1 O VAL B 130 N ALA B 113 SHEET 1 AA3 3 LEU C 31 ASP C 34 0 SHEET 2 AA3 3 LYS C 44 THR C 53 -1 O HIS C 50 N ASP C 34 SHEET 3 AA3 3 GLU C 62 GLN C 68 -1 O ARG C 67 N PHE C 47 SHEET 1 AA4 5 LEU C 31 ASP C 34 0 SHEET 2 AA4 5 LYS C 44 THR C 53 -1 O HIS C 50 N ASP C 34 SHEET 3 AA4 5 ASP C 37 GLU C 41 -1 N GLU C 41 O LYS C 44 SHEET 4 AA4 5 ALA D 113 PHE D 117 -1 O PHE D 116 N ALA C 38 SHEET 5 AA4 5 GLN D 126 VAL D 130 -1 O VAL D 130 N ALA D 113 CRYST1 37.443 43.711 60.070 94.79 99.81 100.97 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026707 0.005179 0.005276 0.00000 SCALE2 0.000000 0.023304 0.002813 0.00000 SCALE3 0.000000 0.000000 0.017017 0.00000