HEADER TRANSFERASE 20-JAN-17 5X0B TITLE FREE SERINE KINASE IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FREE SERINE KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 GENE: TK0378; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THERMOCOCCUS KODAKARENSIS, CYSTEINE BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.NAGATA,M.FUJIHASHI,K.MIKI REVDAT 3 22-NOV-23 5X0B 1 REMARK REVDAT 2 05-JUL-17 5X0B 1 JRNL REVDAT 1 12-APR-17 5X0B 0 JRNL AUTH R.NAGATA,M.FUJIHASHI,H.KAWAMURA,T.SATO,T.FUJITA,H.ATOMI, JRNL AUTH 2 K.MIKI JRNL TITL STRUCTURAL STUDY ON THE REACTION MECHANISM OF A FREE SERINE JRNL TITL 2 KINASE INVOLVED IN CYSTEINE BIOSYNTHESIS JRNL REF ACS CHEM. BIOL. V. 12 1514 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28358477 JRNL DOI 10.1021/ACSCHEMBIO.7B00064 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1280 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1708 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1812 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : 1.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.327 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1887 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1722 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2570 ; 1.536 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3971 ; 0.901 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 6.816 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;31.400 ;25.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 298 ;11.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ; 8.960 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 287 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2130 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 382 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 968 ; 0.331 ; 0.932 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 967 ; 0.332 ; 0.933 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1210 ; 0.601 ; 1.398 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1211 ; 0.600 ; 1.398 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 919 ; 0.310 ; 0.904 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 920 ; 0.310 ; 0.904 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1361 ; 0.515 ; 1.354 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2124 ; 3.895 ; 7.841 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2061 ; 3.792 ; 7.470 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7129 14.5605 8.7179 REMARK 3 T TENSOR REMARK 3 T11: 0.0161 T22: 0.0210 REMARK 3 T33: 0.0031 T12: 0.0105 REMARK 3 T13: 0.0028 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.1314 L22: 2.4565 REMARK 3 L33: 2.0890 L12: 0.6555 REMARK 3 L13: 0.8908 L23: 0.0998 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.1252 S13: -0.0103 REMARK 3 S21: 0.1793 S22: 0.0357 S23: 0.0260 REMARK 3 S31: -0.0303 S32: -0.0781 S33: -0.0302 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1964 19.5142 25.8919 REMARK 3 T TENSOR REMARK 3 T11: 0.2061 T22: 0.3878 REMARK 3 T33: 0.1130 T12: 0.1153 REMARK 3 T13: 0.0390 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 1.4943 L22: 1.4614 REMARK 3 L33: 3.0470 L12: -0.5361 REMARK 3 L13: 0.0223 L23: 0.9039 REMARK 3 S TENSOR REMARK 3 S11: -0.1943 S12: -0.6645 S13: -0.1244 REMARK 3 S21: 0.4322 S22: 0.1420 S23: 0.2369 REMARK 3 S31: -0.0726 S32: -0.5222 S33: 0.0523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X0B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25375 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1VK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SERINE, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 20.02600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.93300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.02600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.93300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 3 CG1 CG2 REMARK 470 LYS A 5 CD CE NZ REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 15 NZ REMARK 470 LYS A 25 CD CE NZ REMARK 470 LYS A 27 CD CE NZ REMARK 470 LYS A 35 CE NZ REMARK 470 LYS A 79 CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 LEU A 110 CG CD1 CD2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 VAL A 114 CG1 CG2 REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 117 CG CD1 CD2 REMARK 470 LYS A 118 CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 PHE A 149 CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 156 CD OE1 OE2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 SER A 169 OG REMARK 470 VAL A 170 CG1 CG2 REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 GLU A 175 CD OE1 OE2 REMARK 470 ARG A 186 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 ILE A 194 CG2 REMARK 470 TYR A 196 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 214 NE CZ NH1 NH2 REMARK 470 LEU A 227 CD1 REMARK 470 LYS A 237 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 100 -167.35 -122.70 REMARK 500 ASN A 111 -57.23 -142.43 REMARK 500 ASP A 127 113.27 -160.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X0E RELATED DB: PDB REMARK 900 RELATED ID: 5X0F RELATED DB: PDB REMARK 900 RELATED ID: 5X0G RELATED DB: PDB REMARK 900 RELATED ID: 5X0J RELATED DB: PDB REMARK 900 RELATED ID: 5X0K RELATED DB: PDB DBREF 5X0B A 1 242 UNP Q5JD03 Q5JD03_THEKO 1 242 SEQRES 1 A 242 MET GLY VAL GLU LYS VAL PRO LYS TYR ASP ILE PRO THR SEQRES 2 A 242 LYS LYS VAL ASP TYR VAL PHE ILE GLU LEU ASP LYS MET SEQRES 3 A 242 LYS PRO HIS GLU GLN LEU VAL GLN LYS GLU LEU GLU ALA SEQRES 4 A 242 PHE ILE GLU SER VAL THR GLY SER GLY ILE PHE TRP LYS SEQRES 5 A 242 PRO MET LEU LEU ALA LYS VAL PRO GLY GLU ASP MET TYR SEQRES 6 A 242 LEU ILE VAL ASP GLY HIS HIS ARG TRP ALA GLY LEU GLN SEQRES 7 A 242 LYS LEU GLY ALA LYS ARG ALA PRO SER VAL ILE LEU ASP SEQRES 8 A 242 TYR PHE SER ASP ASP VAL LYS VAL TYR THR TRP TYR PRO SEQRES 9 A 242 ALA PHE LYS GLY ASP LEU ASN GLU VAL VAL GLU ARG LEU SEQRES 10 A 242 LYS LYS GLU GLY LEU GLU VAL ILE GLU ASP PRO GLU ALA SEQRES 11 A 242 GLU GLU LYS ALA GLU ARG GLY GLU ILE ALA PHE ALA LEU SEQRES 12 A 242 VAL GLY GLU LYS SER PHE ALA ILE PRO GLY GLY LEU GLU SEQRES 13 A 242 GLU GLN LYS LYS VAL SER LYS VAL LEU ASP GLU MET SER SEQRES 14 A 242 VAL GLU GLY LYS ILE GLU LEU ILE TYR TYR GLY LEU LYS SEQRES 15 A 242 GLU ASP ALA ARG GLU ASP MET ALA LYS GLY GLU ILE ASP SEQRES 16 A 242 TYR VAL PHE ILE ARG LYS ALA PRO THR LYS GLU GLU VAL SEQRES 17 A 242 MET GLU LEU VAL LYS ARG GLY GLU VAL TYR SER PRO LYS SEQRES 18 A 242 THR THR ARG HIS VAL LEU PRO PHE ASN PRO ASP LYS ILE SEQRES 19 A 242 ASP VAL LYS LEU GLU GLU LEU PHE HET AMP A 301 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 HOH *139(H2 O) HELIX 1 AA1 VAL A 33 GLY A 48 1 16 HELIX 2 AA2 GLY A 70 GLY A 81 1 12 HELIX 3 AA3 VAL A 113 GLY A 121 1 9 HELIX 4 AA4 GLU A 129 ARG A 136 1 8 HELIX 5 AA5 GLY A 154 GLY A 172 1 19 HELIX 6 AA6 LEU A 181 LYS A 191 1 11 HELIX 7 AA7 THR A 204 ARG A 214 1 11 HELIX 8 AA8 GLU A 239 PHE A 242 5 4 SHEET 1 AA1 7 VAL A 3 LYS A 5 0 SHEET 2 AA1 7 GLU A 175 TYR A 179 1 O TYR A 178 N VAL A 3 SHEET 3 AA1 7 TYR A 103 LYS A 107 -1 N ALA A 105 O ILE A 177 SHEET 4 AA1 7 TYR A 196 ILE A 199 -1 O PHE A 198 N PRO A 104 SHEET 5 AA1 7 PHE A 141 VAL A 144 -1 N ALA A 142 O ILE A 199 SHEET 6 AA1 7 SER A 148 ILE A 151 -1 O PHE A 149 N LEU A 143 SHEET 7 AA1 7 ILE A 125 GLU A 126 -1 N ILE A 125 O ALA A 150 SHEET 1 AA2 2 THR A 13 LYS A 14 0 SHEET 2 AA2 2 ASN A 230 PRO A 231 1 O ASN A 230 N LYS A 14 SHEET 1 AA3 5 VAL A 19 GLU A 22 0 SHEET 2 AA3 5 ARG A 84 ILE A 89 -1 O SER A 87 N VAL A 19 SHEET 3 AA3 5 MET A 54 LYS A 58 1 N MET A 54 O VAL A 88 SHEET 4 AA3 5 TYR A 65 ASP A 69 -1 O LEU A 66 N ALA A 57 SHEET 5 AA3 5 MET A 26 LYS A 27 1 N LYS A 27 O TYR A 65 SHEET 1 AA4 2 ILE A 49 PHE A 50 0 SHEET 2 AA4 2 VAL A 236 LYS A 237 -1 O VAL A 236 N PHE A 50 SHEET 1 AA5 2 LYS A 98 TYR A 100 0 SHEET 2 AA5 2 ARG A 224 VAL A 226 -1 O ARG A 224 N TYR A 100 SITE 1 AC1 16 ASP A 17 PHE A 40 SER A 43 VAL A 44 SITE 2 AC1 16 ILE A 49 PHE A 50 TRP A 51 LYS A 52 SITE 3 AC1 16 GLY A 70 HIS A 71 HIS A 72 ARG A 73 SITE 4 AC1 16 HOH A 401 HOH A 409 HOH A 444 HOH A 474 CRYST1 40.052 69.866 87.417 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011439 0.00000