HEADER TRANSFERASE 20-JAN-17 5X0J TITLE FREE SERINE KINASE (E30Q MUTANT) IN COMPLEX WITH PHOSPHOSERINE AND AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FREE SERINE KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS KOD1; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 GENE: TK0378; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THERMOCOCCUS KODAKARENSIS, CYSTEINE BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.NAGATA,M.FUJIHASHI,K.MIKI REVDAT 3 22-NOV-23 5X0J 1 LINK REVDAT 2 05-JUL-17 5X0J 1 JRNL REVDAT 1 12-APR-17 5X0J 0 JRNL AUTH R.NAGATA,M.FUJIHASHI,H.KAWAMURA,T.SATO,T.FUJITA,H.ATOMI, JRNL AUTH 2 K.MIKI JRNL TITL STRUCTURAL STUDY ON THE REACTION MECHANISM OF A FREE SERINE JRNL TITL 2 KINASE INVOLVED IN CYSTEINE BIOSYNTHESIS JRNL REF ACS CHEM. BIOL. V. 12 1514 2017 JRNL REFN ESSN 1554-8937 JRNL PMID 28358477 JRNL DOI 10.1021/ACSCHEMBIO.7B00064 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 43174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2682 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1906 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 223 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.838 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2136 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2073 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2912 ; 1.369 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4826 ; 0.861 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 277 ; 6.097 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;31.238 ;25.056 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;11.259 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.860 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 318 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2379 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 435 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1031 ; 0.377 ; 1.197 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1030 ; 0.377 ; 1.197 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1302 ; 0.655 ; 1.797 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1303 ; 0.654 ; 1.797 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1105 ; 0.508 ; 1.244 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1100 ; 0.509 ; 1.245 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1600 ; 0.827 ; 1.841 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2578 ; 3.287 ;10.342 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2455 ; 3.051 ; 9.740 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 16 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3913 -5.0015 -35.4750 REMARK 3 T TENSOR REMARK 3 T11: 0.0264 T22: 0.0794 REMARK 3 T33: 0.0274 T12: 0.0087 REMARK 3 T13: 0.0088 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.7493 L22: 1.4184 REMARK 3 L33: 1.6295 L12: -0.5473 REMARK 3 L13: 1.0987 L23: -0.9382 REMARK 3 S TENSOR REMARK 3 S11: 0.1331 S12: 0.1222 S13: -0.0132 REMARK 3 S21: -0.0531 S22: -0.1036 S23: 0.1543 REMARK 3 S31: 0.1738 S32: 0.1879 S33: -0.0295 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9771 2.3259 -29.7926 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: 0.0668 REMARK 3 T33: 0.0078 T12: -0.0414 REMARK 3 T13: 0.0041 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.3578 L22: 0.5868 REMARK 3 L33: 0.6602 L12: -0.4401 REMARK 3 L13: -0.1022 L23: -0.0340 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: 0.0062 S13: 0.0004 REMARK 3 S21: -0.0037 S22: -0.0507 S23: -0.0042 REMARK 3 S31: -0.0605 S32: 0.1188 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 101 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7315 8.0112 -30.6239 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.0232 REMARK 3 T33: 0.0241 T12: -0.0298 REMARK 3 T13: 0.0432 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.1853 L22: 0.6866 REMARK 3 L33: 0.2693 L12: -0.2396 REMARK 3 L13: 0.0947 L23: -0.3965 REMARK 3 S TENSOR REMARK 3 S11: 0.1488 S12: 0.0562 S13: 0.1164 REMARK 3 S21: 0.1197 S22: -0.1006 S23: 0.0526 REMARK 3 S31: -0.1115 S32: 0.0747 S33: -0.0482 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 102 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 10.5025 -11.7780 -9.7146 REMARK 3 T TENSOR REMARK 3 T11: 0.0408 T22: 0.0367 REMARK 3 T33: 0.0135 T12: -0.0129 REMARK 3 T13: 0.0031 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.7295 L22: 0.0419 REMARK 3 L33: 0.8940 L12: -0.1536 REMARK 3 L13: -0.2548 L23: 0.0234 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.0418 S13: -0.0558 REMARK 3 S21: 0.0088 S22: 0.0253 S23: 0.0111 REMARK 3 S31: 0.0224 S32: -0.0019 S33: 0.0092 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9318 -3.6777 -21.6182 REMARK 3 T TENSOR REMARK 3 T11: 0.0335 T22: 0.0347 REMARK 3 T33: 0.0227 T12: -0.0273 REMARK 3 T13: 0.0119 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.2574 L22: 0.2625 REMARK 3 L33: 0.4899 L12: -0.0914 REMARK 3 L13: 0.0396 L23: -0.3430 REMARK 3 S TENSOR REMARK 3 S11: 0.0211 S12: 0.0286 S13: -0.0263 REMARK 3 S21: 0.0318 S22: -0.0222 S23: 0.0159 REMARK 3 S31: -0.0362 S32: 0.0054 S33: 0.0011 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 233 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0221 0.0194 -41.8613 REMARK 3 T TENSOR REMARK 3 T11: 0.0189 T22: 0.0509 REMARK 3 T33: 0.0212 T12: 0.0169 REMARK 3 T13: 0.0154 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 5.8508 L22: 1.1369 REMARK 3 L33: 1.4257 L12: 0.5167 REMARK 3 L13: 2.2444 L23: 0.9828 REMARK 3 S TENSOR REMARK 3 S11: 0.1047 S12: 0.0730 S13: 0.0858 REMARK 3 S21: -0.1140 S22: -0.0966 S23: -0.0536 REMARK 3 S31: -0.0473 S32: -0.0424 S33: -0.0081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-17. REMARK 100 THE DEPOSITION ID IS D_1300002723. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45510 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 5X0E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SERINE, PH 8.7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.91200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.77250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.77250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.91200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CE NZ REMARK 470 GLU A 22 OE1 REMARK 470 ASP A 63 OD1 OD2 REMARK 470 LYS A 79 NZ REMARK 470 LYS A 83 CD CE NZ REMARK 470 TYR A 100 OH REMARK 470 GLU A 146 CD OE1 OE2 REMARK 470 LYS A 147 CE NZ REMARK 470 GLU A 156 CD OE1 OE2 REMARK 470 GLU A 187 OE2 REMARK 470 LYS A 191 NZ REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 ARG A 214 CD NE CZ NH1 NH2 REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 LYS A 233 NZ REMARK 470 LYS A 237 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 167.96 59.68 REMARK 500 TYR A 100 -149.14 -128.86 REMARK 500 ASP A 127 108.08 -164.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD1 REMARK 620 2 AMP A 301 O3P 93.9 REMARK 620 3 SEP A 302 O1P 95.7 95.6 REMARK 620 4 HOH A 411 O 170.3 86.5 93.9 REMARK 620 5 HOH A 431 O 90.5 172.5 89.9 88.1 REMARK 620 6 HOH A 433 O 86.8 89.7 173.9 83.5 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SEP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X0B RELATED DB: PDB REMARK 900 RELATED ID: 5X0E RELATED DB: PDB REMARK 900 RELATED ID: 5X0F RELATED DB: PDB REMARK 900 RELATED ID: 5X0G RELATED DB: PDB REMARK 900 RELATED ID: 5X0K RELATED DB: PDB DBREF 5X0J A 1 242 UNP Q5JD03 Q5JD03_THEKO 1 242 SEQADV 5X0J GLN A 30 UNP Q5JD03 GLU 30 ENGINEERED MUTATION SEQRES 1 A 242 MET GLY VAL GLU LYS VAL PRO LYS TYR ASP ILE PRO THR SEQRES 2 A 242 LYS LYS VAL ASP TYR VAL PHE ILE GLU LEU ASP LYS MET SEQRES 3 A 242 LYS PRO HIS GLN GLN LEU VAL GLN LYS GLU LEU GLU ALA SEQRES 4 A 242 PHE ILE GLU SER VAL THR GLY SER GLY ILE PHE TRP LYS SEQRES 5 A 242 PRO MET LEU LEU ALA LYS VAL PRO GLY GLU ASP MET TYR SEQRES 6 A 242 LEU ILE VAL ASP GLY HIS HIS ARG TRP ALA GLY LEU GLN SEQRES 7 A 242 LYS LEU GLY ALA LYS ARG ALA PRO SER VAL ILE LEU ASP SEQRES 8 A 242 TYR PHE SER ASP ASP VAL LYS VAL TYR THR TRP TYR PRO SEQRES 9 A 242 ALA PHE LYS GLY ASP LEU ASN GLU VAL VAL GLU ARG LEU SEQRES 10 A 242 LYS LYS GLU GLY LEU GLU VAL ILE GLU ASP PRO GLU ALA SEQRES 11 A 242 GLU GLU LYS ALA GLU ARG GLY GLU ILE ALA PHE ALA LEU SEQRES 12 A 242 VAL GLY GLU LYS SER PHE ALA ILE PRO GLY GLY LEU GLU SEQRES 13 A 242 GLU GLN LYS LYS VAL SER LYS VAL LEU ASP GLU MET SER SEQRES 14 A 242 VAL GLU GLY LYS ILE GLU LEU ILE TYR TYR GLY LEU LYS SEQRES 15 A 242 GLU ASP ALA ARG GLU ASP MET ALA LYS GLY GLU ILE ASP SEQRES 16 A 242 TYR VAL PHE ILE ARG LYS ALA PRO THR LYS GLU GLU VAL SEQRES 17 A 242 MET GLU LEU VAL LYS ARG GLY GLU VAL TYR SER PRO LYS SEQRES 18 A 242 THR THR ARG HIS VAL LEU PRO PHE ASN PRO ASP LYS ILE SEQRES 19 A 242 ASP VAL LYS LEU GLU GLU LEU PHE HET AMP A 301 23 HET SEP A 302 11 HET MG A 303 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM SEP PHOSPHOSERINE HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 SEP C3 H8 N O6 P FORMUL 4 MG MG 2+ FORMUL 5 HOH *223(H2 O) HELIX 1 AA1 VAL A 33 GLY A 48 1 16 HELIX 2 AA2 GLY A 70 GLY A 81 1 12 HELIX 3 AA3 ASP A 109 GLU A 120 1 12 HELIX 4 AA4 GLU A 129 ARG A 136 1 8 HELIX 5 AA5 GLY A 154 GLU A 171 1 18 HELIX 6 AA6 LEU A 181 LYS A 191 1 11 HELIX 7 AA7 THR A 204 ARG A 214 1 11 HELIX 8 AA8 GLU A 239 PHE A 242 5 4 SHEET 1 AA1 2 THR A 13 LYS A 14 0 SHEET 2 AA1 2 ASN A 230 PRO A 231 1 O ASN A 230 N LYS A 14 SHEET 1 AA2 5 VAL A 19 GLU A 22 0 SHEET 2 AA2 5 ARG A 84 LEU A 90 -1 O SER A 87 N VAL A 19 SHEET 3 AA2 5 MET A 54 LYS A 58 1 N LEU A 56 O LEU A 90 SHEET 4 AA2 5 TYR A 65 ASP A 69 -1 O LEU A 66 N ALA A 57 SHEET 5 AA2 5 MET A 26 LYS A 27 1 N LYS A 27 O TYR A 65 SHEET 1 AA3 2 ILE A 49 PHE A 50 0 SHEET 2 AA3 2 VAL A 236 LYS A 237 -1 O VAL A 236 N PHE A 50 SHEET 1 AA4 2 LYS A 98 TYR A 100 0 SHEET 2 AA4 2 ARG A 224 VAL A 226 -1 O VAL A 226 N LYS A 98 SHEET 1 AA5 6 ILE A 125 GLU A 126 0 SHEET 2 AA5 6 SER A 148 ILE A 151 -1 O ALA A 150 N ILE A 125 SHEET 3 AA5 6 PHE A 141 VAL A 144 -1 N LEU A 143 O PHE A 149 SHEET 4 AA5 6 TYR A 196 ILE A 199 -1 O ILE A 199 N ALA A 142 SHEET 5 AA5 6 TYR A 103 LYS A 107 -1 N PRO A 104 O PHE A 198 SHEET 6 AA5 6 GLU A 175 TYR A 179 -1 O TYR A 179 N TYR A 103 LINK OD1 ASP A 69 MG MG A 303 1555 1555 2.08 LINK O3P AMP A 301 MG MG A 303 1555 1555 2.05 LINK O1P SEP A 302 MG MG A 303 1555 1555 1.98 LINK MG MG A 303 O HOH A 411 1555 1555 2.13 LINK MG MG A 303 O HOH A 431 1555 1555 2.15 LINK MG MG A 303 O HOH A 433 1555 1555 2.13 SITE 1 AC1 18 GLU A 36 PHE A 40 SER A 43 VAL A 44 SITE 2 AC1 18 ILE A 49 PHE A 50 TRP A 51 LYS A 52 SITE 3 AC1 18 ASP A 69 GLY A 70 HIS A 71 HIS A 72 SITE 4 AC1 18 ARG A 73 SEP A 302 MG A 303 HOH A 402 SITE 5 AC1 18 HOH A 411 HOH A 433 SITE 1 AC2 17 GLN A 30 VAL A 68 ASP A 69 GLY A 70 SITE 2 AC2 17 HIS A 71 HIS A 72 TRP A 102 LYS A 221 SITE 3 AC2 17 THR A 223 ARG A 224 HIS A 225 AMP A 301 SITE 4 AC2 17 MG A 303 HOH A 410 HOH A 411 HOH A 419 SITE 5 AC2 17 HOH A 431 SITE 1 AC3 6 ASP A 69 AMP A 301 SEP A 302 HOH A 411 SITE 2 AC3 6 HOH A 431 HOH A 433 CRYST1 35.824 43.400 157.545 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027914 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006347 0.00000