HEADER TRANSCRIPTION/TRANSCRIPTION INHIBITOR 14-FEB-17 5X54 TITLE CRYSTAL STRUCTURE OF THE KEAP1 KELCH DOMAIN IN COMPLEX WITH A TITLE 2 TETRAPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH-LIKE ECH-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 321-609; COMPND 5 SYNONYM: CYTOSOLIC INHIBITOR OF NRF2,INRF2,KELCH-LIKE PROTEIN 19; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACE-GLU-TRP-TRP-TRP; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KEAP1, INRF2, KIAA0132, KLHL19; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 11 ORGANISM_TAXID: 10760 KEYWDS TRANSCRIPTION, COMPLEX, INHIBITOR, KELCH DOMAIN, NRF2, OXIDATIVE KEYWDS 2 STRESS, TRANSCRIPTION-TRANSCRIPTION INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.SOGABE,A.KADOTANI,W.LANE,G.SNELL REVDAT 3 22-NOV-23 5X54 1 REMARK REVDAT 2 26-APR-17 5X54 1 JRNL REVDAT 1 29-MAR-17 5X54 0 JRNL AUTH S.SOGABE,K.SAKAMOTO,Y.KAMADA,A.KADOTANI,Y.FUKUDA,J.SAKAMOTO JRNL TITL DISCOVERY OF A KELCH-LIKE ECH-ASSOCIATED PROTEIN JRNL TITL 2 1-INHIBITORY TETRAPEPTIDE AND ITS STRUCTURAL JRNL TITL 3 CHARACTERIZATION JRNL REF BIOCHEM. BIOPHYS. RES. V. 486 620 2017 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 28315327 JRNL DOI 10.1016/J.BBRC.2017.03.038 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 37219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1957 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2722 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 162 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4498 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48000 REMARK 3 B22 (A**2) : 1.34000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.204 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4620 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4032 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6294 ; 1.432 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9286 ; 0.979 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 7.206 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;31.219 ;22.434 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;12.554 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;15.121 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 660 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5324 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1048 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2314 ; 0.791 ; 1.981 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2311 ; 0.790 ; 1.980 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2882 ; 1.394 ; 2.966 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2883 ; 1.394 ; 2.966 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2306 ; 1.036 ; 2.144 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2307 ; 1.035 ; 2.144 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3415 ; 1.783 ; 3.165 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4980 ; 3.075 ;22.497 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4935 ; 3.015 ;22.326 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 325 A 609 REMARK 3 RESIDUE RANGE : C 0 C 4 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1153 18.9365 -12.0129 REMARK 3 T TENSOR REMARK 3 T11: 0.0077 T22: 0.0760 REMARK 3 T33: 0.0235 T12: -0.0059 REMARK 3 T13: 0.0039 T23: -0.0392 REMARK 3 L TENSOR REMARK 3 L11: 1.0280 L22: 0.2360 REMARK 3 L33: 0.4076 L12: 0.0396 REMARK 3 L13: 0.3271 L23: 0.1081 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: -0.0238 S13: 0.0367 REMARK 3 S21: -0.0403 S22: 0.0293 S23: -0.0171 REMARK 3 S31: -0.0113 S32: 0.0306 S33: -0.0146 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 325 B 609 REMARK 3 RESIDUE RANGE : D 0 D 4 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0384 2.9332 -29.3429 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.0425 REMARK 3 T33: 0.0177 T12: -0.0084 REMARK 3 T13: 0.0085 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.7134 L22: 0.7816 REMARK 3 L33: 0.4248 L12: 0.1875 REMARK 3 L13: 0.3651 L23: 0.0921 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.0043 S13: -0.0062 REMARK 3 S21: 0.0284 S22: -0.0214 S23: 0.0014 REMARK 3 S31: 0.0173 S32: -0.0081 S33: -0.0027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976486 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39255 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15000 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66600 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1U6D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, SODIUM FORMATE, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.28300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.06600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.85250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.06600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.28300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.85250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 319 REMARK 465 SER A 320 REMARK 465 ALA A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 VAL A 324 REMARK 465 GLY B 319 REMARK 465 SER B 320 REMARK 465 ALA B 321 REMARK 465 PRO B 322 REMARK 465 LYS B 323 REMARK 465 VAL B 324 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 326 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 536 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 335 112.71 -164.34 REMARK 500 ARG A 336 -56.28 69.47 REMARK 500 THR A 481 -52.66 -130.48 REMARK 500 HIS A 516 -117.43 61.01 REMARK 500 GLN A 528 -53.52 -127.05 REMARK 500 VAL A 547 -165.13 -104.30 REMARK 500 HIS A 575 -36.64 -146.95 REMARK 500 ARG B 336 -41.73 68.35 REMARK 500 THR B 481 -57.44 -126.87 REMARK 500 HIS B 516 54.79 39.67 REMARK 500 VAL B 547 -169.16 -119.94 REMARK 500 HIS B 575 -48.32 -148.01 REMARK 500 TRP D 3 34.28 -91.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE C 0 and GLU C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 0 and GLU D 1 DBREF 5X54 A 321 609 UNP Q14145 KEAP1_HUMAN 321 609 DBREF 5X54 B 321 609 UNP Q14145 KEAP1_HUMAN 321 609 DBREF 5X54 C 0 4 PDB 5X54 5X54 0 4 DBREF 5X54 D 0 4 PDB 5X54 5X54 0 4 SEQADV 5X54 GLY A 319 UNP Q14145 EXPRESSION TAG SEQADV 5X54 SER A 320 UNP Q14145 EXPRESSION TAG SEQADV 5X54 GLY B 319 UNP Q14145 EXPRESSION TAG SEQADV 5X54 SER B 320 UNP Q14145 EXPRESSION TAG SEQRES 1 A 291 GLY SER ALA PRO LYS VAL GLY ARG LEU ILE TYR THR ALA SEQRES 2 A 291 GLY GLY TYR PHE ARG GLN SER LEU SER TYR LEU GLU ALA SEQRES 3 A 291 TYR ASN PRO SER ASP GLY THR TRP LEU ARG LEU ALA ASP SEQRES 4 A 291 LEU GLN VAL PRO ARG SER GLY LEU ALA GLY CYS VAL VAL SEQRES 5 A 291 GLY GLY LEU LEU TYR ALA VAL GLY GLY ARG ASN ASN SER SEQRES 6 A 291 PRO ASP GLY ASN THR ASP SER SER ALA LEU ASP CYS TYR SEQRES 7 A 291 ASN PRO MET THR ASN GLN TRP SER PRO CYS ALA PRO MET SEQRES 8 A 291 SER VAL PRO ARG ASN ARG ILE GLY VAL GLY VAL ILE ASP SEQRES 9 A 291 GLY HIS ILE TYR ALA VAL GLY GLY SER HIS GLY CYS ILE SEQRES 10 A 291 HIS HIS ASN SER VAL GLU ARG TYR GLU PRO GLU ARG ASP SEQRES 11 A 291 GLU TRP HIS LEU VAL ALA PRO MET LEU THR ARG ARG ILE SEQRES 12 A 291 GLY VAL GLY VAL ALA VAL LEU ASN ARG LEU LEU TYR ALA SEQRES 13 A 291 VAL GLY GLY PHE ASP GLY THR ASN ARG LEU ASN SER ALA SEQRES 14 A 291 GLU CYS TYR TYR PRO GLU ARG ASN GLU TRP ARG MET ILE SEQRES 15 A 291 THR ALA MET ASN THR ILE ARG SER GLY ALA GLY VAL CYS SEQRES 16 A 291 VAL LEU HIS ASN CYS ILE TYR ALA ALA GLY GLY TYR ASP SEQRES 17 A 291 GLY GLN ASP GLN LEU ASN SER VAL GLU ARG TYR ASP VAL SEQRES 18 A 291 GLU THR GLU THR TRP THR PHE VAL ALA PRO MET LYS HIS SEQRES 19 A 291 ARG ARG SER ALA LEU GLY ILE THR VAL HIS GLN GLY ARG SEQRES 20 A 291 ILE TYR VAL LEU GLY GLY TYR ASP GLY HIS THR PHE LEU SEQRES 21 A 291 ASP SER VAL GLU CYS TYR ASP PRO ASP THR ASP THR TRP SEQRES 22 A 291 SER GLU VAL THR ARG MET THR SER GLY ARG SER GLY VAL SEQRES 23 A 291 GLY VAL ALA VAL THR SEQRES 1 B 291 GLY SER ALA PRO LYS VAL GLY ARG LEU ILE TYR THR ALA SEQRES 2 B 291 GLY GLY TYR PHE ARG GLN SER LEU SER TYR LEU GLU ALA SEQRES 3 B 291 TYR ASN PRO SER ASP GLY THR TRP LEU ARG LEU ALA ASP SEQRES 4 B 291 LEU GLN VAL PRO ARG SER GLY LEU ALA GLY CYS VAL VAL SEQRES 5 B 291 GLY GLY LEU LEU TYR ALA VAL GLY GLY ARG ASN ASN SER SEQRES 6 B 291 PRO ASP GLY ASN THR ASP SER SER ALA LEU ASP CYS TYR SEQRES 7 B 291 ASN PRO MET THR ASN GLN TRP SER PRO CYS ALA PRO MET SEQRES 8 B 291 SER VAL PRO ARG ASN ARG ILE GLY VAL GLY VAL ILE ASP SEQRES 9 B 291 GLY HIS ILE TYR ALA VAL GLY GLY SER HIS GLY CYS ILE SEQRES 10 B 291 HIS HIS ASN SER VAL GLU ARG TYR GLU PRO GLU ARG ASP SEQRES 11 B 291 GLU TRP HIS LEU VAL ALA PRO MET LEU THR ARG ARG ILE SEQRES 12 B 291 GLY VAL GLY VAL ALA VAL LEU ASN ARG LEU LEU TYR ALA SEQRES 13 B 291 VAL GLY GLY PHE ASP GLY THR ASN ARG LEU ASN SER ALA SEQRES 14 B 291 GLU CYS TYR TYR PRO GLU ARG ASN GLU TRP ARG MET ILE SEQRES 15 B 291 THR ALA MET ASN THR ILE ARG SER GLY ALA GLY VAL CYS SEQRES 16 B 291 VAL LEU HIS ASN CYS ILE TYR ALA ALA GLY GLY TYR ASP SEQRES 17 B 291 GLY GLN ASP GLN LEU ASN SER VAL GLU ARG TYR ASP VAL SEQRES 18 B 291 GLU THR GLU THR TRP THR PHE VAL ALA PRO MET LYS HIS SEQRES 19 B 291 ARG ARG SER ALA LEU GLY ILE THR VAL HIS GLN GLY ARG SEQRES 20 B 291 ILE TYR VAL LEU GLY GLY TYR ASP GLY HIS THR PHE LEU SEQRES 21 B 291 ASP SER VAL GLU CYS TYR ASP PRO ASP THR ASP THR TRP SEQRES 22 B 291 SER GLU VAL THR ARG MET THR SER GLY ARG SER GLY VAL SEQRES 23 B 291 GLY VAL ALA VAL THR SEQRES 1 C 5 ACE GLU TRP TRP TRP SEQRES 1 D 5 ACE GLU TRP TRP TRP HET ACE C 0 3 HET ACE D 0 3 HET ACT B 901 4 HET ACT B 902 4 HETNAM ACE ACETYL GROUP HETNAM ACT ACETATE ION FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *318(H2 O) SHEET 1 AA1 4 TRP A 352 ARG A 354 0 SHEET 2 AA1 4 LEU A 342 TYR A 345 -1 N ALA A 344 O LEU A 353 SHEET 3 AA1 4 LEU A 327 ALA A 331 -1 N THR A 330 O GLU A 343 SHEET 4 AA1 4 GLY A 605 THR A 609 -1 O ALA A 607 N TYR A 329 SHEET 1 AA2 4 ALA A 366 VAL A 370 0 SHEET 2 AA2 4 LEU A 373 VAL A 377 -1 O TYR A 375 N CYS A 368 SHEET 3 AA2 4 LEU A 393 ASN A 397 -1 O TYR A 396 N LEU A 374 SHEET 4 AA2 4 GLN A 402 PRO A 405 -1 O SER A 404 N CYS A 395 SHEET 1 AA3 2 ARG A 380 SER A 383 0 SHEET 2 AA3 2 GLY A 386 ASP A 389 -1 O THR A 388 N ASN A 381 SHEET 1 AA4 4 GLY A 417 ILE A 421 0 SHEET 2 AA4 4 HIS A 424 VAL A 428 -1 O VAL A 428 N GLY A 417 SHEET 3 AA4 4 VAL A 440 TYR A 443 -1 O TYR A 443 N ILE A 425 SHEET 4 AA4 4 TRP A 450 VAL A 453 -1 O HIS A 451 N ARG A 442 SHEET 1 AA5 2 SER A 431 HIS A 432 0 SHEET 2 AA5 2 ILE A 435 HIS A 436 -1 O ILE A 435 N HIS A 432 SHEET 1 AA6 4 GLY A 464 LEU A 468 0 SHEET 2 AA6 4 LEU A 471 PHE A 478 -1 O TYR A 473 N ALA A 466 SHEET 3 AA6 4 ARG A 483 TYR A 491 -1 O TYR A 490 N LEU A 472 SHEET 4 AA6 4 GLU A 496 ILE A 500 -1 O ARG A 498 N CYS A 489 SHEET 1 AA7 4 GLY A 511 LEU A 515 0 SHEET 2 AA7 4 CYS A 518 ALA A 522 -1 O ALA A 522 N GLY A 511 SHEET 3 AA7 4 VAL A 534 ASP A 538 -1 O GLU A 535 N ALA A 521 SHEET 4 AA7 4 THR A 543 PHE A 546 -1 O THR A 545 N ARG A 536 SHEET 1 AA8 4 GLY A 558 HIS A 562 0 SHEET 2 AA8 4 ARG A 565 LEU A 569 -1 O LEU A 569 N GLY A 558 SHEET 3 AA8 4 SER A 580 ASP A 585 -1 O TYR A 584 N ILE A 566 SHEET 4 AA8 4 THR A 590 ARG A 596 -1 O SER A 592 N CYS A 583 SHEET 1 AA9 4 TRP B 352 LEU B 355 0 SHEET 2 AA9 4 LEU B 342 TYR B 345 -1 N LEU B 342 O LEU B 355 SHEET 3 AA9 4 LEU B 327 ALA B 331 -1 N THR B 330 O GLU B 343 SHEET 4 AA9 4 GLY B 605 THR B 609 -1 O GLY B 605 N ALA B 331 SHEET 1 AB1 4 ALA B 366 VAL B 370 0 SHEET 2 AB1 4 LEU B 373 VAL B 377 -1 O VAL B 377 N ALA B 366 SHEET 3 AB1 4 LEU B 393 TYR B 396 -1 O TYR B 396 N LEU B 374 SHEET 4 AB1 4 TRP B 403 PRO B 405 -1 O SER B 404 N CYS B 395 SHEET 1 AB2 2 ARG B 380 SER B 383 0 SHEET 2 AB2 2 GLY B 386 ASP B 389 -1 O THR B 388 N ASN B 381 SHEET 1 AB3 4 GLY B 417 ILE B 421 0 SHEET 2 AB3 4 HIS B 424 VAL B 428 -1 O TYR B 426 N GLY B 419 SHEET 3 AB3 4 VAL B 440 GLU B 444 -1 O GLU B 441 N ALA B 427 SHEET 4 AB3 4 GLU B 449 VAL B 453 -1 O HIS B 451 N ARG B 442 SHEET 1 AB4 2 SER B 431 HIS B 432 0 SHEET 2 AB4 2 ILE B 435 HIS B 436 -1 O ILE B 435 N HIS B 432 SHEET 1 AB5 4 GLY B 464 LEU B 468 0 SHEET 2 AB5 4 LEU B 471 PHE B 478 -1 O TYR B 473 N ALA B 466 SHEET 3 AB5 4 ARG B 483 TYR B 491 -1 O TYR B 490 N LEU B 472 SHEET 4 AB5 4 GLU B 496 MET B 499 -1 O ARG B 498 N CYS B 489 SHEET 1 AB6 4 GLY B 511 LEU B 515 0 SHEET 2 AB6 4 CYS B 518 ALA B 522 -1 O ALA B 522 N GLY B 511 SHEET 3 AB6 4 VAL B 534 ASP B 538 -1 O GLU B 535 N ALA B 521 SHEET 4 AB6 4 THR B 543 PHE B 546 -1 O THR B 545 N ARG B 536 SHEET 1 AB7 4 GLY B 558 HIS B 562 0 SHEET 2 AB7 4 ARG B 565 LEU B 569 -1 O TYR B 567 N THR B 560 SHEET 3 AB7 4 SER B 580 ASP B 585 -1 O TYR B 584 N ILE B 566 SHEET 4 AB7 4 THR B 590 ARG B 596 -1 O SER B 592 N CYS B 583 LINK C ACE C 0 N GLU C 1 1555 1555 1.32 LINK C ACE D 0 N GLU D 1 1555 1555 1.35 SITE 1 AC1 5 TYR B 491 PRO B 492 GLU B 493 ARG B 494 SITE 2 AC1 5 HOH B1065 SITE 1 AC2 2 ASP B 357 ARG B 470 SITE 1 AC3 11 ARG A 415 ARG A 483 SER A 508 ASP A 587 SITE 2 AC3 11 THR A 588 TRP C 2 TRP C 3 TRP C 4 SITE 3 AC3 11 HOH C 101 HOH C 103 HOH C 104 SITE 1 AC4 7 ARG B 415 ARG B 483 SER B 508 TRP D 2 SITE 2 AC4 7 TRP D 3 TRP D 4 HOH D 101 CRYST1 68.566 75.705 168.132 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005948 0.00000