HEADER HYDROLASE 14-FEB-17 5X55 TITLE CRYSTAL STRUCTURE OF MIMIVIRUS URACIL-DNA GLYCOSYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDG; COMPND 5 EC: 3.2.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACANTHAMOEBA POLYPHAGA MIMIVIRUS; SOURCE 3 ORGANISM_COMMON: APMV; SOURCE 4 ORGANISM_TAXID: 212035; SOURCE 5 GENE: UNG, MIMI_L249; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS FAMILY-I URACIL-DNA GLYCOSYLASE, LONG N-DOMAIN, INSERTIONAL MOTIF, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.KWON,D.PATHAK,D.Y.KIM REVDAT 2 22-NOV-23 5X55 1 REMARK REVDAT 1 09-AUG-17 5X55 0 JRNL AUTH E.KWON,D.PATHAK,H.W.CHANG,D.Y.KIM JRNL TITL CRYSTAL STRUCTURE OF MIMIVIRUS URACIL-DNA GLYCOSYLASE JRNL REF PLOS ONE V. 12 82382 2017 JRNL REFN ESSN 1932-6203 JRNL PMID 28763516 JRNL DOI 10.1371/JOURNAL.PONE.0182382 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2313: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7468 - 4.9517 1.00 2703 163 0.1585 0.1942 REMARK 3 2 4.9517 - 3.9332 1.00 2648 139 0.1385 0.1472 REMARK 3 3 3.9332 - 3.4368 1.00 2613 127 0.1559 0.1970 REMARK 3 4 3.4368 - 3.1230 1.00 2615 143 0.1822 0.2612 REMARK 3 5 3.1230 - 2.8993 1.00 2603 117 0.1939 0.2514 REMARK 3 6 2.8993 - 2.7285 1.00 2549 154 0.1937 0.2587 REMARK 3 7 2.7285 - 2.5919 1.00 2564 151 0.1957 0.2430 REMARK 3 8 2.5919 - 2.4792 1.00 2585 130 0.2030 0.2347 REMARK 3 9 2.4792 - 2.3838 1.00 2617 94 0.2059 0.2965 REMARK 3 10 2.3838 - 2.3016 0.98 2508 158 0.2105 0.2652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4643 REMARK 3 ANGLE : 0.987 6318 REMARK 3 CHIRALITY : 0.057 676 REMARK 3 PLANARITY : 0.006 796 REMARK 3 DIHEDRAL : 12.609 2759 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27418 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3CXM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, PEG3350, ISOPROPANOL, CACL2, PH REMARK 280 7.5, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.19000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.19000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.13350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.80900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.13350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.80900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.19000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.13350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.80900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.19000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.13350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.80900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 5 REMARK 465 VAL A 6 REMARK 465 ASP A 7 REMARK 465 PRO A 8 REMARK 465 PHE A 9 REMARK 465 SER A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 GLU A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 SER A 20 REMARK 465 ILE A 21 REMARK 465 PHE A 22 REMARK 465 SER A 23 REMARK 465 SER A 24 REMARK 465 ASP A 25 REMARK 465 ASN A 26 REMARK 465 GLU A 27 REMARK 465 GLU A 28 REMARK 465 ASN A 29 REMARK 465 SER A 30 REMARK 465 ASP A 31 REMARK 465 VAL A 32 REMARK 465 ASP A 33 REMARK 465 ASN A 34 REMARK 465 SER A 35 REMARK 465 VAL A 36 REMARK 465 ILE A 37 REMARK 465 ILE A 38 REMARK 465 ASN A 39 REMARK 465 ASP A 40 REMARK 465 LYS A 41 REMARK 465 ASN A 42 REMARK 465 THR A 43 REMARK 465 LYS A 44 REMARK 465 SER A 45 REMARK 465 ASP A 46 REMARK 465 GLU A 47 REMARK 465 ALA A 48 REMARK 465 ASP A 49 REMARK 465 ILE A 50 REMARK 465 LYS A 51 REMARK 465 TYR A 52 REMARK 465 MET A 53 REMARK 465 ASP A 54 REMARK 465 GLU A 55 REMARK 465 ASP A 56 REMARK 465 GLU A 57 REMARK 465 SER A 58 REMARK 465 SER A 59 REMARK 465 ASP A 60 REMARK 465 SER A 61 REMARK 465 GLU A 62 REMARK 465 SER A 63 REMARK 465 GLU A 64 REMARK 465 SER A 65 REMARK 465 GLU A 66 REMARK 465 SER A 67 REMARK 465 LYS A 68 REMARK 465 LYS A 69 REMARK 465 LYS A 70 REMARK 465 SER A 71 REMARK 465 LYS A 72 REMARK 465 LYS A 73 REMARK 465 SER A 74 REMARK 465 LYS A 75 REMARK 465 LYS A 76 REMARK 465 SER A 77 REMARK 465 LYS A 78 REMARK 465 LYS A 79 REMARK 465 SER A 80 REMARK 465 LYS A 81 REMARK 465 LYS A 82 REMARK 465 SER A 83 REMARK 465 VAL A 84 REMARK 465 THR A 85 REMARK 465 LYS A 86 REMARK 465 LYS A 87 REMARK 465 LYS A 88 REMARK 465 ASN A 89 REMARK 465 ASN A 90 REMARK 465 LEU A 91 REMARK 465 LEU A 92 REMARK 465 VAL A 93 REMARK 465 GLY A 94 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 LYS B 4 REMARK 465 ASN B 5 REMARK 465 VAL B 6 REMARK 465 ASP B 7 REMARK 465 PRO B 8 REMARK 465 PHE B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 SER B 12 REMARK 465 ASP B 13 REMARK 465 SER B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 GLU B 17 REMARK 465 PRO B 18 REMARK 465 PRO B 19 REMARK 465 SER B 20 REMARK 465 ILE B 21 REMARK 465 PHE B 22 REMARK 465 SER B 23 REMARK 465 SER B 24 REMARK 465 ASP B 25 REMARK 465 ASN B 26 REMARK 465 GLU B 27 REMARK 465 GLU B 28 REMARK 465 ASN B 29 REMARK 465 SER B 30 REMARK 465 ASP B 31 REMARK 465 VAL B 32 REMARK 465 ASP B 33 REMARK 465 ASN B 34 REMARK 465 SER B 35 REMARK 465 VAL B 36 REMARK 465 ILE B 37 REMARK 465 ILE B 38 REMARK 465 ASN B 39 REMARK 465 ASP B 40 REMARK 465 LYS B 41 REMARK 465 ASN B 42 REMARK 465 THR B 43 REMARK 465 LYS B 44 REMARK 465 SER B 45 REMARK 465 ASP B 46 REMARK 465 GLU B 47 REMARK 465 ALA B 48 REMARK 465 ASP B 49 REMARK 465 ILE B 50 REMARK 465 LYS B 51 REMARK 465 TYR B 52 REMARK 465 MET B 53 REMARK 465 ASP B 54 REMARK 465 GLU B 55 REMARK 465 ASP B 56 REMARK 465 GLU B 57 REMARK 465 SER B 58 REMARK 465 SER B 59 REMARK 465 ASP B 60 REMARK 465 SER B 61 REMARK 465 GLU B 62 REMARK 465 SER B 63 REMARK 465 GLU B 64 REMARK 465 SER B 65 REMARK 465 GLU B 66 REMARK 465 SER B 67 REMARK 465 LYS B 68 REMARK 465 LYS B 69 REMARK 465 LYS B 70 REMARK 465 SER B 71 REMARK 465 LYS B 72 REMARK 465 LYS B 73 REMARK 465 SER B 74 REMARK 465 LYS B 75 REMARK 465 LYS B 76 REMARK 465 SER B 77 REMARK 465 LYS B 78 REMARK 465 LYS B 79 REMARK 465 SER B 80 REMARK 465 LYS B 81 REMARK 465 LYS B 82 REMARK 465 SER B 83 REMARK 465 VAL B 84 REMARK 465 THR B 85 REMARK 465 LYS B 86 REMARK 465 LYS B 87 REMARK 465 LYS B 88 REMARK 465 ASN B 89 REMARK 465 ASN B 90 REMARK 465 LEU B 91 REMARK 465 LEU B 92 REMARK 465 VAL B 93 REMARK 465 GLY B 94 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 480 O HOH A 563 2.00 REMARK 500 OG1 THR B 284 O HOH B 401 2.06 REMARK 500 O HOH A 508 O HOH A 534 2.07 REMARK 500 O HOH B 455 O HOH B 486 2.08 REMARK 500 OD1 ASP B 289 NH1 ARG B 361 2.09 REMARK 500 OD2 ASP A 349 O HOH A 401 2.09 REMARK 500 O HOH B 486 O HOH B 522 2.10 REMARK 500 O GLU B 116 O HOH B 402 2.11 REMARK 500 O THR B 284 NZ LYS B 310 2.11 REMARK 500 O HOH B 451 O HOH B 522 2.15 REMARK 500 OD1 ASN A 355 O HOH A 402 2.16 REMARK 500 O LEU B 370 O HOH B 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 447 O HOH B 403 6445 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 190 -83.11 -98.64 REMARK 500 PHE A 209 -25.45 69.79 REMARK 500 GLN B 190 -70.03 -87.51 REMARK 500 PHE B 209 -22.58 71.60 REMARK 500 ASP B 289 36.06 71.85 REMARK 500 ASP B 369 -65.01 -99.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 543 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 544 DISTANCE = 6.71 ANGSTROMS DBREF 5X55 A 1 370 UNP Q5UPT2 UNG_MIMIV 1 370 DBREF 5X55 B 1 370 UNP Q5UPT2 UNG_MIMIV 1 370 SEQRES 1 A 370 MET SER LYS LYS ASN VAL ASP PRO PHE SER ASP SER ASP SEQRES 2 A 370 SER SER SER GLU PRO PRO SER ILE PHE SER SER ASP ASN SEQRES 3 A 370 GLU GLU ASN SER ASP VAL ASP ASN SER VAL ILE ILE ASN SEQRES 4 A 370 ASP LYS ASN THR LYS SER ASP GLU ALA ASP ILE LYS TYR SEQRES 5 A 370 MET ASP GLU ASP GLU SER SER ASP SER GLU SER GLU SER SEQRES 6 A 370 GLU SER LYS LYS LYS SER LYS LYS SER LYS LYS SER LYS SEQRES 7 A 370 LYS SER LYS LYS SER VAL THR LYS LYS LYS ASN ASN LEU SEQRES 8 A 370 LEU VAL GLY ASN ARG ILE ILE THR GLU TYR ILE LEU ILE SEQRES 9 A 370 ASP ALA ASN ASN TYR HIS PHE LYS SER TRP ILE GLU CYS SEQRES 10 A 370 PHE PRO ASP CYS LYS VAL ASN LEU LYS LEU LEU LEU PHE SEQRES 11 A 370 ARG PRO GLU TRP PHE ASP PHE PHE LYS TYR VAL GLU SER SEQRES 12 A 370 LYS THR TYR PHE PRO GLN LEU GLU SER LYS LEU SER SER SEQRES 13 A 370 TYR LEU GLU LYS ARG GLN ARG ILE VAL PRO TYR PRO GLU SEQRES 14 A 370 LEU LEU PHE ASN THR MET ASN VAL LEU PRO PRO GLY LYS SEQRES 15 A 370 ILE LYS VAL VAL ILE LEU GLY GLN ASP PRO TYR PRO GLY SEQRES 16 A 370 SER CYS ILE SER GLY VAL PRO TYR ALA MET GLY CYS SER SEQRES 17 A 370 PHE SER VAL PRO LEU ASN CYS PRO VAL PRO LYS SER LEU SEQRES 18 A 370 ALA ASN ILE TYR THR ASN LEU ILE LYS PHE ASN HIS MET SEQRES 19 A 370 ARG LYS ALA PRO LYS HIS GLY CYS LEU ALA SER TRP ILE SEQRES 20 A 370 LEU GLN GLY THR PHE MET ILE ASN SER ALA PHE THR THR SEQRES 21 A 370 VAL LEU ASN GLU SER GLY VAL HIS ALA ARG THR TRP GLU SEQRES 22 A 370 SER PHE THR ALA ASP LEU ILE ASP TYR LEU THR ASP ASN SEQRES 23 A 370 TYR ASP ASP LEU ILE PHE VAL ALA TRP GLY ALA HIS ALA SEQRES 24 A 370 HIS LYS LEU CYS GLN ARG VAL ASP PRO LYS LYS HIS TYR SEQRES 25 A 370 ILE ILE THR SER SER HIS PRO SER PRO TYR SER VAL SER SEQRES 26 A 370 ASN THR MET THR SER MET SER TYR GLY PRO ASN PRO LYS SEQRES 27 A 370 LYS VAL THR TYR PRO SER PHE ASN SER VAL ASP HIS PHE SEQRES 28 A 370 GLY LYS ILE ASN GLU HIS LEU LYS SER ARG ASN LYS LYS SEQRES 29 A 370 PRO ILE PHE TRP ASP LEU SEQRES 1 B 370 MET SER LYS LYS ASN VAL ASP PRO PHE SER ASP SER ASP SEQRES 2 B 370 SER SER SER GLU PRO PRO SER ILE PHE SER SER ASP ASN SEQRES 3 B 370 GLU GLU ASN SER ASP VAL ASP ASN SER VAL ILE ILE ASN SEQRES 4 B 370 ASP LYS ASN THR LYS SER ASP GLU ALA ASP ILE LYS TYR SEQRES 5 B 370 MET ASP GLU ASP GLU SER SER ASP SER GLU SER GLU SER SEQRES 6 B 370 GLU SER LYS LYS LYS SER LYS LYS SER LYS LYS SER LYS SEQRES 7 B 370 LYS SER LYS LYS SER VAL THR LYS LYS LYS ASN ASN LEU SEQRES 8 B 370 LEU VAL GLY ASN ARG ILE ILE THR GLU TYR ILE LEU ILE SEQRES 9 B 370 ASP ALA ASN ASN TYR HIS PHE LYS SER TRP ILE GLU CYS SEQRES 10 B 370 PHE PRO ASP CYS LYS VAL ASN LEU LYS LEU LEU LEU PHE SEQRES 11 B 370 ARG PRO GLU TRP PHE ASP PHE PHE LYS TYR VAL GLU SER SEQRES 12 B 370 LYS THR TYR PHE PRO GLN LEU GLU SER LYS LEU SER SER SEQRES 13 B 370 TYR LEU GLU LYS ARG GLN ARG ILE VAL PRO TYR PRO GLU SEQRES 14 B 370 LEU LEU PHE ASN THR MET ASN VAL LEU PRO PRO GLY LYS SEQRES 15 B 370 ILE LYS VAL VAL ILE LEU GLY GLN ASP PRO TYR PRO GLY SEQRES 16 B 370 SER CYS ILE SER GLY VAL PRO TYR ALA MET GLY CYS SER SEQRES 17 B 370 PHE SER VAL PRO LEU ASN CYS PRO VAL PRO LYS SER LEU SEQRES 18 B 370 ALA ASN ILE TYR THR ASN LEU ILE LYS PHE ASN HIS MET SEQRES 19 B 370 ARG LYS ALA PRO LYS HIS GLY CYS LEU ALA SER TRP ILE SEQRES 20 B 370 LEU GLN GLY THR PHE MET ILE ASN SER ALA PHE THR THR SEQRES 21 B 370 VAL LEU ASN GLU SER GLY VAL HIS ALA ARG THR TRP GLU SEQRES 22 B 370 SER PHE THR ALA ASP LEU ILE ASP TYR LEU THR ASP ASN SEQRES 23 B 370 TYR ASP ASP LEU ILE PHE VAL ALA TRP GLY ALA HIS ALA SEQRES 24 B 370 HIS LYS LEU CYS GLN ARG VAL ASP PRO LYS LYS HIS TYR SEQRES 25 B 370 ILE ILE THR SER SER HIS PRO SER PRO TYR SER VAL SER SEQRES 26 B 370 ASN THR MET THR SER MET SER TYR GLY PRO ASN PRO LYS SEQRES 27 B 370 LYS VAL THR TYR PRO SER PHE ASN SER VAL ASP HIS PHE SEQRES 28 B 370 GLY LYS ILE ASN GLU HIS LEU LYS SER ARG ASN LYS LYS SEQRES 29 B 370 PRO ILE PHE TRP ASP LEU FORMUL 3 HOH *320(H2 O) HELIX 1 AA1 ILE A 97 LEU A 103 1 7 HELIX 2 AA2 ASP A 105 TYR A 109 5 5 HELIX 3 AA3 SER A 113 PHE A 118 1 6 HELIX 4 AA4 ASN A 124 LEU A 129 5 6 HELIX 5 AA5 ARG A 131 GLU A 133 5 3 HELIX 6 AA6 TRP A 134 SER A 143 1 10 HELIX 7 AA7 THR A 145 LYS A 160 1 16 HELIX 8 AA8 TYR A 167 LEU A 171 5 5 HELIX 9 AA9 PHE A 172 LEU A 178 1 7 HELIX 10 AB1 PRO A 179 ILE A 183 5 5 HELIX 11 AB2 PRO A 218 PHE A 231 1 14 HELIX 12 AB3 LEU A 243 GLN A 249 1 7 HELIX 13 AB4 TRP A 272 TYR A 287 1 16 HELIX 14 AB5 GLY A 296 GLN A 304 1 9 HELIX 15 AB6 SER A 344 VAL A 348 5 5 HELIX 16 AB7 ASP A 349 ARG A 361 1 13 HELIX 17 AB8 ILE B 97 LEU B 103 1 7 HELIX 18 AB9 SER B 113 PHE B 118 1 6 HELIX 19 AC1 ASN B 124 LEU B 129 5 6 HELIX 20 AC2 ARG B 131 GLU B 133 5 3 HELIX 21 AC3 TRP B 134 LYS B 144 1 11 HELIX 22 AC4 THR B 145 LYS B 160 1 16 HELIX 23 AC5 TYR B 167 PHE B 172 1 6 HELIX 24 AC6 PHE B 172 LEU B 178 1 7 HELIX 25 AC7 PRO B 179 ILE B 183 5 5 HELIX 26 AC8 PRO B 218 PHE B 231 1 14 HELIX 27 AC9 LEU B 243 GLN B 249 1 7 HELIX 28 AD1 HIS B 268 TYR B 287 1 20 HELIX 29 AD2 GLY B 296 GLN B 304 1 9 HELIX 30 AD3 SER B 344 VAL B 348 5 5 HELIX 31 AD4 ASP B 349 ARG B 361 1 13 SHEET 1 AA1 2 ILE A 164 VAL A 165 0 SHEET 2 AA1 2 THR A 260 VAL A 261 -1 O THR A 260 N VAL A 165 SHEET 1 AA2 4 THR A 251 ASN A 255 0 SHEET 2 AA2 4 VAL A 185 GLY A 189 1 N VAL A 185 O PHE A 252 SHEET 3 AA2 4 ILE A 291 TRP A 295 1 O ILE A 291 N VAL A 186 SHEET 4 AA2 4 TYR A 312 SER A 316 1 O ILE A 314 N ALA A 294 SHEET 1 AA3 2 MET A 328 SER A 332 0 SHEET 2 AA3 2 LYS A 338 TYR A 342 -1 O TYR A 342 N MET A 328 SHEET 1 AA4 2 ILE B 164 VAL B 165 0 SHEET 2 AA4 2 THR B 260 VAL B 261 -1 O THR B 260 N VAL B 165 SHEET 1 AA5 4 THR B 251 ASN B 255 0 SHEET 2 AA5 4 VAL B 185 GLY B 189 1 N VAL B 185 O PHE B 252 SHEET 3 AA5 4 ILE B 291 TRP B 295 1 O VAL B 293 N VAL B 186 SHEET 4 AA5 4 TYR B 312 SER B 316 1 O ILE B 314 N ALA B 294 SHEET 1 AA6 2 MET B 328 SER B 332 0 SHEET 2 AA6 2 LYS B 338 TYR B 342 -1 O LYS B 338 N SER B 332 SSBOND 1 CYS B 197 CYS B 215 1555 1555 2.08 CISPEP 1 VAL A 165 PRO A 166 0 -5.57 CISPEP 2 VAL B 165 PRO B 166 0 -2.83 CRYST1 96.267 95.618 132.380 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010388 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007554 0.00000