HEADER HYDROLASE 15-FEB-17 5X5G TITLE CRYSTAL STRUCTURE OF TLA-3 EXTENDED-SPECTRUM BETA-LACTAMASE IN A TITLE 2 COMPLEX WITH OP0595 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 30-309; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS EXTENDED-SPECTRUM BETA-LACTAMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WACHINO,W.JIN,Y.ARAKAWA REVDAT 4 09-OCT-24 5X5G 1 REMARK REVDAT 3 22-NOV-23 5X5G 1 REMARK REVDAT 2 23-JAN-19 5X5G 1 JRNL REVDAT 1 12-JUL-17 5X5G 0 JRNL AUTH W.JIN,J.WACHINO,Y.YAMAGUCHI,K.KIMURA,A.KUMAR,M.YAMADA, JRNL AUTH 2 A.MORINAKA,Y.SAKAMAKI,M.YONEZAWA,H.KUROSAKI,Y.ARAKAWA JRNL TITL STRUCTURAL INSIGHTS INTO THE TLA-3 EXTENDED-SPECTRUM JRNL TITL 2 BETA-LACTAMASE AND ITS INHIBITION BY AVIBACTAM AND OP0595. JRNL REF ANTIMICROB. AGENTS V. 61 2017 JRNL REF 2 CHEMOTHER. JRNL REFN ESSN 1098-6596 JRNL PMID 28739781 JRNL DOI 10.1128/AAC.00501-17 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 17989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 903 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : 1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.97000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.525 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2246 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2108 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3036 ; 1.477 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4933 ; 0.775 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 6.953 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;32.856 ;26.196 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 419 ;15.491 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;13.130 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 350 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2416 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 404 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1099 ; 2.247 ; 1.848 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1098 ; 2.226 ; 1.845 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1372 ; 2.915 ; 2.752 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1373 ; 2.914 ; 2.755 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1147 ; 3.546 ; 2.213 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1148 ; 3.545 ; 2.214 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1665 ; 4.903 ; 3.172 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2671 ; 5.955 ;23.390 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2672 ; 5.955 ;23.401 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AICHISR REMARK 200 BEAMLINE : BL2S1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18894 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 55.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5GS8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 2.8M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.59500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.95500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.59500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.95500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -3.63462 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.17402 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 499 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 523 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 538 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 549 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 551 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 554 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 572 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 10 REMARK 465 LYS A 11 REMARK 465 ASP A 287 REMARK 465 GLY A 288 REMARK 465 LYS A 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 488 O HOH A 553 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 55 -129.01 40.88 REMARK 500 ASN A 91 50.64 -94.56 REMARK 500 SER A 94 90.62 -162.73 REMARK 500 ASN A 149 36.23 73.40 REMARK 500 LYS A 185 26.59 -79.36 REMARK 500 ASN A 186 51.07 27.24 REMARK 500 ARG A 210 -117.47 -97.55 REMARK 500 ASP A 261 59.33 39.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 159 O REMARK 620 2 ALA A 162 O 72.3 REMARK 620 3 TRP A 163 O 139.5 72.3 REMARK 620 4 HOH A 480 O 80.1 141.9 119.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OP0 A 305 DBREF1 5X5G A 10 289 UNP A0A0B6VPP7_SERMA DBREF2 5X5G A A0A0B6VPP7 30 309 SEQRES 1 A 280 ALA LYS GLY THR ASP SER LEU LYS ASN SER ILE GLU LYS SEQRES 2 A 280 TYR LEU LYS ASP LYS LYS ALA LYS VAL GLY VAL ALA VAL SEQRES 3 A 280 LEU GLY ILE GLU ASP ASN PHE LYS LEU ASN VAL ASN GLU SEQRES 4 A 280 LYS HIS HIS TYR PRO MET GLN SER THR TYR LYS PHE HIS SEQRES 5 A 280 LEU ALA LEU ALA VAL LEU ASP LYS LEU ASP LYS GLU ASN SEQRES 6 A 280 ILE SER VAL ASP LYS LYS LEU PHE VAL LYS LYS SER ASP SEQRES 7 A 280 LEU GLN PRO ASN THR TRP SER PRO LEU LYS ASP LYS TYR SEQRES 8 A 280 PRO ASN GLY ASN LEU GLU LEU SER PHE SER GLU ILE ILE SEQRES 9 A 280 LYS SER THR VAL SER HIS SER ASP ASN ASN GLY CYS ASP SEQRES 10 A 280 ILE LEU PHE ARG PHE VAL GLY GLY THR ASN LYS VAL HIS SEQRES 11 A 280 ASN PHE ILE SER LYS LEU GLY VAL LYS ASN ILE SER ILE SEQRES 12 A 280 LYS ALA THR GLU GLU GLU MET HIS LYS ALA TRP ASN VAL SEQRES 13 A 280 GLN TYR THR ASN TRP THR THR PRO ASP ALA THR VAL GLN SEQRES 14 A 280 LEU LEU LYS LYS PHE TYR LYS ASN GLU ILE LEU SER LYS SEQRES 15 A 280 ASN SER TYR ASP PHE LEU LEU ASN THR MET ILE GLU THR SEQRES 16 A 280 THR THR GLY PRO LYS ARG LEU LYS GLY LEU LEU PRO ASP SEQRES 17 A 280 GLY THR VAL VAL ALA HIS LYS THR GLY SER SER ASP THR SEQRES 18 A 280 ASN ASN LYS GLY ILE THR ALA ALA THR ASN ASP ILE GLY SEQRES 19 A 280 ILE ILE THR LEU PRO ASN GLY LYS HIS PHE ALA ILE ALA SEQRES 20 A 280 VAL TYR VAL SER ASP SER SER GLU LYS SER ASP VAL ASN SEQRES 21 A 280 GLU LYS ILE ILE ALA GLU ILE CYS LYS SER VAL TRP ASP SEQRES 22 A 280 TYR LEU VAL LYS ASP GLY LYS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET NA A 304 1 HET OP0 A 305 21 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM OP0 (2S,5R)-N-(2-AMINOETHOXY)-1-FORMYL-5-[(SULFOOXY) HETNAM 2 OP0 AMINO]PIPERIDINE-2-CARBOXAMIDE FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 NA NA 1+ FORMUL 6 OP0 C9 H18 N4 O7 S FORMUL 7 HOH *172(H2 O) HELIX 1 AA1 GLY A 12 LYS A 25 1 14 HELIX 2 AA2 THR A 57 GLU A 73 1 17 HELIX 3 AA3 LYS A 84 LEU A 88 5 5 HELIX 4 AA4 SER A 94 TYR A 100 1 7 HELIX 5 AA5 PHE A 109 HIS A 119 1 11 HELIX 6 AA6 ASP A 121 GLY A 133 1 13 HELIX 7 AA7 GLY A 134 LEU A 145 1 12 HELIX 8 AA8 THR A 155 LYS A 161 1 7 HELIX 9 AA9 ALA A 162 THR A 168 5 7 HELIX 10 AB1 THR A 172 LYS A 185 1 14 HELIX 11 AB2 SER A 190 GLU A 203 1 14 HELIX 12 AB3 LYS A 265 LYS A 286 1 22 SHEET 1 AA1 5 LYS A 43 VAL A 46 0 SHEET 2 AA1 5 LYS A 30 GLY A 37 -1 N VAL A 33 O VAL A 46 SHEET 3 AA1 5 HIS A 252 SER A 262 -1 O ALA A 254 N LEU A 36 SHEET 4 AA1 5 THR A 236 THR A 246 -1 N THR A 236 O SER A 262 SHEET 5 AA1 5 VAL A 221 SER A 227 -1 N GLY A 226 O ASN A 240 SHEET 1 AA2 3 TYR A 52 PRO A 53 0 SHEET 2 AA2 3 TRP A 170 THR A 171 -1 O THR A 171 N TYR A 52 SHEET 3 AA2 3 ILE A 150 SER A 151 -1 N SER A 151 O TRP A 170 SHEET 1 AA3 2 LYS A 80 VAL A 83 0 SHEET 2 AA3 2 LEU A 105 SER A 108 -1 O LEU A 105 N VAL A 83 LINK OG SER A 56 C1 OP0 A 305 1555 1555 1.53 LINK O MET A 159 NA NA A 304 1555 1555 2.84 LINK O ALA A 162 NA NA A 304 1555 1555 2.79 LINK O TRP A 163 NA NA A 304 1555 1555 2.93 LINK NA NA A 304 O HOH A 480 1555 1555 2.88 SITE 1 AC1 9 LYS A 30 HIS A 50 HIS A 51 TYR A 184 SITE 2 AC1 9 VAL A 220 THR A 246 HIS A 252 HOH A 407 SITE 3 AC1 9 HOH A 442 SITE 1 AC2 10 LYS A 85 PRO A 90 LYS A 97 PRO A 101 SITE 2 AC2 10 GLY A 207 ARG A 210 GLU A 270 HOH A 434 SITE 3 AC2 10 HOH A 448 HOH A 463 SITE 1 AC3 5 ALA A 162 TRP A 163 ASN A 164 ASN A 232 SITE 2 AC3 5 HOH A 517 SITE 1 AC4 6 MET A 159 ALA A 162 TRP A 163 VAL A 165 SITE 2 AC4 6 GLN A 166 HOH A 480 SITE 1 AC5 20 GLN A 55 SER A 56 LYS A 59 PRO A 90 SITE 2 AC5 20 TRP A 93 SER A 120 ASN A 122 GLU A 156 SITE 3 AC5 20 HIS A 160 THR A 206 LYS A 224 THR A 225 SITE 4 AC5 20 GLY A 226 SER A 227 ASP A 229 HOH A 402 SITE 5 AC5 20 HOH A 403 HOH A 443 HOH A 480 HOH A 510 CRYST1 95.190 67.910 45.320 90.00 94.60 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010505 0.000000 0.000845 0.00000 SCALE2 0.000000 0.014725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022137 0.00000