HEADER HYDROLASE/ANTIBIOTIC 16-FEB-17 5X5M TITLE CRYSTAL STRUCTURE OF A HYDROLASE ENCODED BY LIN2189 FROM LISTERIA TITLE 2 INNOCUA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIN2189 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA INNOCUA SEROVAR 6A (STRAIN ATCC BAA- SOURCE 3 680 / CLIP 11262); SOURCE 4 ORGANISM_TAXID: 272626; SOURCE 5 STRAIN: ATCC BAA-680 / CLIP 11262; SOURCE 6 GENE: LIN2189; SOURCE 7 EXPRESSION_SYSTEM: ENTEROBACTERIA PHAGE L1; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 268588 KEYWDS HYDROLASE, HYDROLASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHANG REVDAT 2 22-NOV-23 5X5M 1 REMARK REVDAT 1 06-DEC-17 5X5M 0 JRNL AUTH H.YUAN,J.ZHANG,Y.CAI,S.WU,K.YANG,H.C.S.CHAN,W.HUANG,W.B.JIN, JRNL AUTH 2 Y.LI,Y.YIN,Y.IGARASHI,S.YUAN,J.ZHOU,G.L.TANG JRNL TITL GYRI-LIKE PROTEINS CATALYZE CYCLOPROPANOID HYDROLYSIS TO JRNL TITL 2 CONFER CELLULAR PROTECTION JRNL REF NAT COMMUN V. 8 1485 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 29133784 JRNL DOI 10.1038/S41467-017-01508-1 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 112028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0682 - 3.7628 0.98 3758 178 0.1652 0.1959 REMARK 3 2 3.7628 - 2.9869 1.00 3729 209 0.1669 0.1668 REMARK 3 3 2.9869 - 2.6094 0.97 3619 182 0.1904 0.2011 REMARK 3 4 2.6094 - 2.3708 0.99 3691 184 0.1937 0.2205 REMARK 3 5 2.3708 - 2.2009 0.99 3691 196 0.1877 0.2059 REMARK 3 6 2.2009 - 2.0711 0.99 3639 203 0.1761 0.1912 REMARK 3 7 2.0711 - 1.9674 0.98 3613 181 0.1718 0.1720 REMARK 3 8 1.9674 - 1.8818 0.94 3496 191 0.1801 0.1762 REMARK 3 9 1.8818 - 1.8093 0.98 3620 185 0.1765 0.1791 REMARK 3 10 1.8093 - 1.7469 0.98 3567 189 0.1789 0.2030 REMARK 3 11 1.7469 - 1.6923 0.98 3648 173 0.1800 0.2005 REMARK 3 12 1.6923 - 1.6439 0.98 3627 181 0.1780 0.1897 REMARK 3 13 1.6439 - 1.6006 0.97 3576 183 0.1785 0.1980 REMARK 3 14 1.6006 - 1.5615 0.93 3424 192 0.1703 0.2172 REMARK 3 15 1.5615 - 1.5260 0.95 3512 194 0.1788 0.2227 REMARK 3 16 1.5260 - 1.4936 0.97 3502 196 0.1804 0.1954 REMARK 3 17 1.4936 - 1.4637 0.96 3542 193 0.1800 0.2044 REMARK 3 18 1.4637 - 1.4361 0.97 3555 189 0.1846 0.2097 REMARK 3 19 1.4361 - 1.4104 0.97 3562 182 0.1909 0.2178 REMARK 3 20 1.4104 - 1.3865 0.96 3578 185 0.1920 0.2218 REMARK 3 21 1.3865 - 1.3641 0.96 3500 206 0.1986 0.1959 REMARK 3 22 1.3641 - 1.3432 0.94 3420 196 0.1906 0.2136 REMARK 3 23 1.3432 - 1.3234 0.94 3443 185 0.1998 0.2094 REMARK 3 24 1.3234 - 1.3048 0.96 3518 191 0.2049 0.2247 REMARK 3 25 1.3048 - 1.2871 0.95 3510 176 0.2110 0.2237 REMARK 3 26 1.2871 - 1.2704 0.96 3466 184 0.2072 0.2443 REMARK 3 27 1.2704 - 1.2545 0.94 3458 202 0.2125 0.2288 REMARK 3 28 1.2545 - 1.2394 0.94 3462 184 0.2144 0.2373 REMARK 3 29 1.2394 - 1.2250 0.94 3460 165 0.2154 0.2075 REMARK 3 30 1.2250 - 1.2112 0.88 3237 150 0.2220 0.2390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3594 REMARK 3 ANGLE : 1.146 4867 REMARK 3 CHIRALITY : 0.083 486 REMARK 3 PLANARITY : 0.005 615 REMARK 3 DIHEDRAL : 24.625 1397 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112031 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3B49 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, GLYCEROL, MES/IMIDAZOLE, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.81500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.64750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.81500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.64750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 129 O HOH B 402 2.07 REMARK 500 O HOH B 562 O HOH B 568 2.14 REMARK 500 O HOH B 425 O HOH B 566 2.15 REMARK 500 OD1 ASP B 176 O HOH B 403 2.17 REMARK 500 O HOH A 555 O HOH A 634 2.17 REMARK 500 O HOH B 564 O HOH B 567 2.18 REMARK 500 OE2 GLU A 117 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 55.54 -144.91 REMARK 500 ILE A 180 -63.82 -107.74 REMARK 500 ALA B 17 57.37 -141.02 REMARK 500 ARG B 20 43.27 -81.40 REMARK 500 LYS B 90 163.93 69.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7YU A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7YU B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X5R RELATED DB: PDB DBREF 5X5M A 2 208 UNP Q929T5 Q929T5_LISIN 2 208 DBREF 5X5M B 2 208 UNP Q929T5 Q929T5_LISIN 2 208 SEQADV 5X5M MET A -7 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M GLY A -6 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M SER A -5 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS A -4 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS A -3 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS A -2 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS A -1 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS A 0 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS A 1 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M ALA A 157 UNP Q929T5 GLU 157 ENGINEERED MUTATION SEQADV 5X5M LEU A 185 UNP Q929T5 GLU 185 ENGINEERED MUTATION SEQADV 5X5M MET B -7 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M GLY B -6 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M SER B -5 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS B -4 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS B -3 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS B -2 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS B -1 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS B 0 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M HIS B 1 UNP Q929T5 EXPRESSION TAG SEQADV 5X5M ALA B 157 UNP Q929T5 GLU 157 ENGINEERED MUTATION SEQADV 5X5M LEU B 185 UNP Q929T5 GLU 185 ENGINEERED MUTATION SEQRES 1 A 216 MET GLY SER HIS HIS HIS HIS HIS HIS THR GLU LYS LYS SEQRES 2 A 216 ILE ASP PHE LYS LYS GLU GLU LYS LYS PHE TYR ALA PRO SEQRES 3 A 216 LYS ARG LYS PRO GLU ARG ILE PHE VAL PRO GLU MET ASN SEQRES 4 A 216 PHE LEU MET VAL ASP GLY LYS GLY ASP PRO ASP GLY GLU SEQRES 5 A 216 GLU TYR GLN LYS ALA VAL GLN SER LEU TYR ALA ILE ALA SEQRES 6 A 216 TYR THR ILE LYS MET SER LYS MET GLY GLU THR ARG LEU SEQRES 7 A 216 ASP GLY TYR SER ASP PHE VAL VAL PRO PRO LEU GLU GLY SEQRES 8 A 216 PHE TRP TRP SER GLU GLY LYS PHE ASP LEU LYS ASP ARG SEQRES 9 A 216 ASP ALA TRP LEU TRP THR SER ILE LEU ARG GLN PRO ASP SEQRES 10 A 216 PHE VAL THR GLU GLU VAL LEU GLU TRP ALA LYS GLU VAL SEQRES 11 A 216 ALA ARG LYS LYS LYS PRO ASP VAL ASP THR SER ARG VAL SEQRES 12 A 216 LYS LEU VAL ARG PHE GLU GLU GLY GLU CYS VAL GLN MET SEQRES 13 A 216 MET HIS VAL GLY PRO PHE SER GLU ALA VAL HIS THR VAL SEQRES 14 A 216 ALA GLU MET HIS GLN PHE MET GLU THR GLU GLY LEU ARG SEQRES 15 A 216 ASN ASP THR GLY ALA ILE ARG LYS HIS HIS LEU ILE TYR SEQRES 16 A 216 LEU SER ASP PRO ARG LYS ALA ASN PRO GLU LYS MET LYS SEQRES 17 A 216 THR ILE LEU ARG LEU PRO VAL SER SEQRES 1 B 216 MET GLY SER HIS HIS HIS HIS HIS HIS THR GLU LYS LYS SEQRES 2 B 216 ILE ASP PHE LYS LYS GLU GLU LYS LYS PHE TYR ALA PRO SEQRES 3 B 216 LYS ARG LYS PRO GLU ARG ILE PHE VAL PRO GLU MET ASN SEQRES 4 B 216 PHE LEU MET VAL ASP GLY LYS GLY ASP PRO ASP GLY GLU SEQRES 5 B 216 GLU TYR GLN LYS ALA VAL GLN SER LEU TYR ALA ILE ALA SEQRES 6 B 216 TYR THR ILE LYS MET SER LYS MET GLY GLU THR ARG LEU SEQRES 7 B 216 ASP GLY TYR SER ASP PHE VAL VAL PRO PRO LEU GLU GLY SEQRES 8 B 216 PHE TRP TRP SER GLU GLY LYS PHE ASP LEU LYS ASP ARG SEQRES 9 B 216 ASP ALA TRP LEU TRP THR SER ILE LEU ARG GLN PRO ASP SEQRES 10 B 216 PHE VAL THR GLU GLU VAL LEU GLU TRP ALA LYS GLU VAL SEQRES 11 B 216 ALA ARG LYS LYS LYS PRO ASP VAL ASP THR SER ARG VAL SEQRES 12 B 216 LYS LEU VAL ARG PHE GLU GLU GLY GLU CYS VAL GLN MET SEQRES 13 B 216 MET HIS VAL GLY PRO PHE SER GLU ALA VAL HIS THR VAL SEQRES 14 B 216 ALA GLU MET HIS GLN PHE MET GLU THR GLU GLY LEU ARG SEQRES 15 B 216 ASN ASP THR GLY ALA ILE ARG LYS HIS HIS LEU ILE TYR SEQRES 16 B 216 LEU SER ASP PRO ARG LYS ALA ASN PRO GLU LYS MET LYS SEQRES 17 B 216 THR ILE LEU ARG LEU PRO VAL SER HET DMS A 301 4 HET 7YU A 302 49 HET DMS B 301 4 HET 7YU B 302 49 HETNAM DMS DIMETHYL SULFOXIDE HETNAM 7YU (+)-YATAKEMYCIN FORMUL 3 DMS 2(C2 H6 O S) FORMUL 4 7YU 2(C35 H29 N5 O8 S) FORMUL 7 HOH *428(H2 O) HELIX 1 AA1 ASP A 7 GLU A 12 1 6 HELIX 2 AA2 LYS A 13 TYR A 16 5 4 HELIX 3 AA3 GLY A 43 SER A 63 1 21 HELIX 4 AA4 LYS A 64 GLY A 66 5 3 HELIX 5 AA5 ASP A 95 ALA A 98 5 4 HELIX 6 AA6 THR A 112 LYS A 127 1 16 HELIX 7 AA7 PRO A 153 SER A 155 5 3 HELIX 8 AA8 GLU A 156 GLY A 172 1 17 HELIX 9 AA9 ASN A 195 LYS A 198 5 4 HELIX 10 AB1 ASP B 7 GLU B 12 1 6 HELIX 11 AB2 GLU B 12 ALA B 17 1 6 HELIX 12 AB3 GLY B 43 MET B 62 1 20 HELIX 13 AB4 SER B 63 GLY B 66 5 4 HELIX 14 AB5 GLU B 88 LYS B 90 5 3 HELIX 15 AB6 ASP B 95 ALA B 98 5 4 HELIX 16 AB7 THR B 112 LYS B 127 1 16 HELIX 17 AB8 PRO B 153 SER B 155 5 3 HELIX 18 AB9 GLU B 156 GLY B 172 1 17 HELIX 19 AC1 ASN B 195 LYS B 198 5 4 SHEET 1 AA1 7 GLU A 23 LYS A 38 0 SHEET 2 AA1 7 LEU A 100 GLN A 107 -1 O LEU A 105 N LEU A 33 SHEET 3 AA1 7 GLU A 82 TRP A 86 -1 N GLU A 82 O ILE A 104 SHEET 4 AA1 7 HIS A 183 TYR A 187 -1 O LEU A 185 N GLY A 83 SHEET 5 AA1 7 LYS A 200 PRO A 206 -1 O ARG A 204 N HIS A 184 SHEET 6 AA1 7 LYS A 136 VAL A 151 -1 N HIS A 150 O THR A 201 SHEET 7 AA1 7 GLU A 23 LYS A 38 -1 N VAL A 27 O GLY A 143 SHEET 1 AA2 7 GLU B 23 LYS B 38 0 SHEET 2 AA2 7 LEU B 100 GLN B 107 -1 O LEU B 105 N LEU B 33 SHEET 3 AA2 7 GLU B 82 TRP B 86 -1 N PHE B 84 O THR B 102 SHEET 4 AA2 7 LYS B 182 TYR B 187 -1 O LEU B 185 N GLY B 83 SHEET 5 AA2 7 LYS B 200 PRO B 206 -1 O ILE B 202 N ILE B 186 SHEET 6 AA2 7 LYS B 136 VAL B 151 -1 N HIS B 150 O THR B 201 SHEET 7 AA2 7 GLU B 23 LYS B 38 -1 N ILE B 25 O CYS B 145 SITE 1 AC1 7 PRO A 41 TYR A 46 GLY A 83 PHE A 84 SITE 2 AC1 7 TRP A 101 TYR A 187 HOH A 441 SITE 1 AC2 20 PRO A 41 ASP A 42 TYR A 46 GLN A 47 SITE 2 AC2 20 VAL A 50 TYR A 54 TYR A 58 TRP A 85 SITE 3 AC2 20 TRP A 99 PHE A 154 TYR A 187 ASP A 190 SITE 4 AC2 20 PRO A 191 ARG A 192 HOH A 504 HOH A 534 SITE 5 AC2 20 HOH A 561 HOH A 570 HOH A 579 HOH A 601 SITE 1 AC3 3 GLY B 83 TYR B 187 HOH B 467 SITE 1 AC4 20 TYR B 46 GLN B 47 VAL B 50 GLN B 51 SITE 2 AC4 20 TYR B 54 TYR B 58 TRP B 85 TRP B 99 SITE 3 AC4 20 LYS B 127 PHE B 154 TYR B 187 PRO B 191 SITE 4 AC4 20 ARG B 192 HOH B 425 HOH B 460 HOH B 493 SITE 5 AC4 20 HOH B 501 HOH B 505 HOH B 516 HOH B 568 CRYST1 119.630 49.295 80.361 90.00 124.98 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008359 0.000000 0.005849 0.00000 SCALE2 0.000000 0.020286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015188 0.00000