HEADER HYDROLASE 17-FEB-17 5X5S TITLE LIGAND INDUCED STRUCTURE OF AMYP-SBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 491-639; COMPND 5 SYNONYM: PUTATIVE AMYLASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 GENE: AMY-1E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STARCH BINDING DOMAIN, LIGAND INDUCED STRUCTURE, ALPHA-AMYLASE, KEYWDS 2 HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.LI,J.YU,H.SUN,X.ZHANG REVDAT 2 14-JUN-23 5X5S 1 REMARK REVDAT 1 05-APR-17 5X5S 0 JRNL AUTH X.LI,J.YU,X.TU,H.SUN,H.PENG,X.ZHANG JRNL TITL LIGAND BINDING INDUCED FOLDING OF A NOVEL CBM69 STARCH JRNL TITL 2 BINDING DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002888. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-99% 15N] AMYP-SBD, 2 REMARK 210 MM NA- BETA-CYCLODEXTRIN, 90% REMARK 210 H2O/10% D2O; 0.4 MM [U-99% 13C; REMARK 210 U-99% 15N] AMYP-SBD, 2 MM NA REMARK 210 BETA-CYCLODEXTRIN, 90% H2O/10% REMARK 210 D2O; 0.4 MM [U-99% 13C; U-99% REMARK 210 15N] AMYP-SBD, 2 MM NA BETA- REMARK 210 CYCLODEXTRIN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N TOCSY; REMARK 210 3D 1H-15N NOESY; 3D CBCA(CO)NH; REMARK 210 3D CBCANH; 3D HBHA(CO)NH; 3D REMARK 210 HCC(CO)NH; 3D CC(CO)NH; 3D HNCO; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 LEU A 150 REMARK 465 GLU A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 178.53 58.75 REMARK 500 1 THR A 8 -56.57 -136.95 REMARK 500 1 SER A 14 -81.91 64.99 REMARK 500 1 ALA A 15 132.34 -177.17 REMARK 500 1 ALA A 16 98.79 -165.48 REMARK 500 1 ASP A 36 41.90 -107.18 REMARK 500 1 PRO A 38 91.12 -68.06 REMARK 500 1 PHE A 49 -69.68 -175.96 REMARK 500 1 ASP A 51 -70.22 -110.05 REMARK 500 1 ALA A 52 31.51 80.55 REMARK 500 1 TYR A 62 106.73 -163.82 REMARK 500 1 GLU A 67 32.57 169.68 REMARK 500 1 ALA A 80 101.60 57.28 REMARK 500 1 ASP A 89 38.19 -97.10 REMARK 500 1 GLU A 100 86.02 57.38 REMARK 500 1 LYS A 110 -160.57 -107.65 REMARK 500 1 TYR A 114 38.67 -172.29 REMARK 500 1 ASP A 139 -73.83 -112.87 REMARK 500 2 ALA A 4 -67.51 -161.31 REMARK 500 2 LEU A 7 77.35 56.88 REMARK 500 2 SER A 14 35.89 -98.98 REMARK 500 2 CYS A 28 76.58 59.58 REMARK 500 2 GLU A 34 107.33 -53.80 REMARK 500 2 ALA A 52 -57.43 -153.62 REMARK 500 2 SER A 53 86.98 50.51 REMARK 500 2 TRP A 54 60.87 62.10 REMARK 500 2 TYR A 62 120.86 -172.06 REMARK 500 2 GLU A 67 31.60 161.44 REMARK 500 2 ASP A 89 31.26 -96.76 REMARK 500 2 PRO A 92 105.27 -43.89 REMARK 500 2 ASP A 97 -157.61 -64.88 REMARK 500 2 GLU A 100 81.99 62.21 REMARK 500 2 LYS A 110 -73.02 -85.94 REMARK 500 2 ASP A 139 -62.86 -139.69 REMARK 500 3 SER A 3 96.26 -68.34 REMARK 500 3 VAL A 13 -52.52 -132.97 REMARK 500 3 ASP A 29 131.61 -174.86 REMARK 500 3 ASP A 36 42.45 -105.92 REMARK 500 3 PHE A 49 159.90 157.60 REMARK 500 3 GLN A 56 111.35 -169.15 REMARK 500 3 GLU A 67 28.92 171.55 REMARK 500 3 ALA A 78 143.36 69.61 REMARK 500 3 ALA A 80 74.87 77.17 REMARK 500 3 ASP A 89 35.48 -95.62 REMARK 500 3 LEU A 99 -36.42 -174.59 REMARK 500 3 GLU A 100 78.57 62.77 REMARK 500 3 LYS A 110 -67.89 -97.64 REMARK 500 3 ARG A 111 -45.71 -178.15 REMARK 500 3 ASP A 139 -65.63 -158.93 REMARK 500 4 PRO A 2 91.95 -55.62 REMARK 500 REMARK 500 THIS ENTRY HAS 171 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36061 RELATED DB: BMRB DBREF 5X5S A 1 149 UNP D9MZ14 D9MZ14_9BACT 491 639 SEQADV 5X5S LEU A 150 UNP D9MZ14 EXPRESSION TAG SEQADV 5X5S GLU A 151 UNP D9MZ14 EXPRESSION TAG SEQADV 5X5S HIS A 152 UNP D9MZ14 EXPRESSION TAG SEQADV 5X5S HIS A 153 UNP D9MZ14 EXPRESSION TAG SEQADV 5X5S HIS A 154 UNP D9MZ14 EXPRESSION TAG SEQADV 5X5S HIS A 155 UNP D9MZ14 EXPRESSION TAG SEQADV 5X5S HIS A 156 UNP D9MZ14 EXPRESSION TAG SEQADV 5X5S HIS A 157 UNP D9MZ14 EXPRESSION TAG SEQRES 1 A 157 THR PRO SER ALA SER GLY LEU THR LYS VAL ALA THR VAL SEQRES 2 A 157 SER ALA ALA SER SER LEU ILE GLY GLU GLY PHE MET ALA SEQRES 3 A 157 GLN CYS ASP ASN PRO THR ILE GLU GLY ASP GLY PRO ILE SEQRES 4 A 157 GLY LYS THR LEU TYR VAL VAL GLY ASP PHE ALA ASP ALA SEQRES 5 A 157 SER TRP LYS GLN LYS PRO HIS ARG ALA TYR ARG TYR VAL SEQRES 6 A 157 GLY GLU ASN THR TYR GLN ALA VAL VAL ASP GLU LYS ALA SEQRES 7 A 157 GLY ALA PHE ARG MET GLN TYR ALA SER LYS ASP TRP SER SEQRES 8 A 157 PRO GLN PHE THR ALA ASP GLY LEU GLU LEU THR PRO GLY SEQRES 9 A 157 LYS THR ALA SER LEU LYS ARG GLY GLY TYR GLY GLN ASP SEQRES 10 A 157 THR ALA VAL THR LEU PRO GLU ALA GLY GLN TYR VAL TRP SEQRES 11 A 157 SER LEU LYS PHE THR ASP SER GLY ASP PRO GLU GLN ILE SEQRES 12 A 157 MET VAL SER LYS CYS PRO LEU GLU HIS HIS HIS HIS HIS SEQRES 13 A 157 HIS HELIX 1 AA1 GLY A 23 CYS A 28 5 6 HELIX 2 AA2 LYS A 57 ALA A 61 5 5 SHEET 1 AA1 3 TYR A 44 ASP A 48 0 SHEET 2 AA1 3 PHE A 81 ALA A 86 -1 O ARG A 82 N ASP A 48 SHEET 3 AA1 3 THR A 118 VAL A 120 -1 O VAL A 120 N PHE A 81 SHEET 1 AA2 5 ARG A 63 VAL A 65 0 SHEET 2 AA2 5 THR A 69 GLU A 76 -1 O GLN A 71 N ARG A 63 SHEET 3 AA2 5 GLY A 126 PHE A 134 -1 O LEU A 132 N TYR A 70 SHEET 4 AA2 5 GLU A 141 SER A 146 -1 O MET A 144 N SER A 131 SHEET 5 AA2 5 LYS A 105 SER A 108 -1 N ALA A 107 O ILE A 143 SSBOND 1 CYS A 28 CYS A 148 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1