HEADER IMMUNE SYSTEM 18-FEB-17 5X5X TITLE CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ANTI-OSTEOCALCIN C-TERMINAL TITLE 2 PEPTIDE ANTIBODY KTM219 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FD CHAIN OF ANTI-OSTEOCALCIN ANTIBODY KTM219; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: L CHAIN OF ANTI-OSTEOCALCIN ANTIBODY KTM219; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 CELL_LINE: HYBRIDOMA KTM-219; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SHUFFLE T7 EXPRESS LYSY; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-FAB; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 CELL_LINE: HYBRIDOMA KTM-219; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: SHUFFLE T7 EXPRESS LYSY; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-FAB KEYWDS QUENCHBODY (Q-BODY), IMMUNOGLOBULIN FOLD, OSTEOCALCIN, OPEN SANDWICH KEYWDS 2 IMMUNOASSAY (OS-IA), IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.KOMATSU,J.DONG,H.UEDA,R.ARAI REVDAT 2 22-NOV-23 5X5X 1 REMARK REVDAT 1 21-FEB-18 5X5X 0 JRNL AUTH R.ARAI,M.KOMATSU,J.DONG,H.UEDA JRNL TITL CRYSTAL STRUCTURE OF THE FAB FRAGMENT OF ANTI-OSTEOCALCIN JRNL TITL 2 C-TERMINAL PEPTIDE ANTIBODY KTM219 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.L.LIM,H.ICHINOSE,T.SHINODA,H.UEDA REMARK 1 TITL NONCOMPETITIVE DETECTION OF LOW MOLECULAR WEIGHT PEPTIDES BY REMARK 1 TITL 2 OPEN SANDWICH IMMUNOASSAY. REMARK 1 REF ANAL. CHEM. V. 79 6193 2007 REMARK 1 REFN ISSN 0003-2700 REMARK 1 PMID 17636882 REMARK 1 DOI 10.1021/AC070653Z REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 33891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1786 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2404 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3271 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.128 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3460 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3193 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4678 ; 1.539 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7428 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 6.779 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;35.011 ;25.118 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;13.377 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;17.487 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3855 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 749 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5X5X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35733 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48400 REMARK 200 FOR SHELL : 4.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 4KUZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M SODIUM FORMATE, 29% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.40000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.44100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 48.44100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET H -3 REMARK 465 ALA H -2 REMARK 465 THR H -1 REMARK 465 GLY H 0 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 ALA H 216 REMARK 465 SER H 217 REMARK 465 ALA H 218 REMARK 465 ALA H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 GLY H 226 REMARK 465 ALA H 227 REMARK 465 ALA H 228 REMARK 465 GLU H 229 REMARK 465 GLN H 230 REMARK 465 LYS H 231 REMARK 465 LEU H 232 REMARK 465 ILE H 233 REMARK 465 SER H 234 REMARK 465 GLU H 235 REMARK 465 GLU H 236 REMARK 465 ASP H 237 REMARK 465 LEU H 238 REMARK 465 ASN H 239 REMARK 465 GLY H 240 REMARK 465 ALA H 241 REMARK 465 ALA H 242 REMARK 465 MET L -1 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 GLY L 214 REMARK 465 GLY L 215 REMARK 465 GLY L 216 REMARK 465 SER L 217 REMARK 465 ASP L 218 REMARK 465 TYR L 219 REMARK 465 LYS L 220 REMARK 465 ASP L 221 REMARK 465 ASP L 222 REMARK 465 ASP L 223 REMARK 465 ASP L 224 REMARK 465 LYS L 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 499 O HOH H 499 2656 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 22 CA - CB - SG ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU L 51 -56.02 83.79 REMARK 500 LEU L 51 -57.23 83.40 REMARK 500 LYS L 190 -62.25 -106.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 H 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 H 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT H 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT H 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT L 303 DBREF 5X5X H -3 242 PDB 5X5X 5X5X -3 242 DBREF 5X5X L -1 225 PDB 5X5X 5X5X -1 225 SEQRES 1 H 249 MET ALA THR GLY GLN VAL LYS LEU GLN GLN SER GLY ALA SEQRES 2 H 249 GLU PHE VAL LYS ALA GLY ALA SER VAL LYS LEU SER CYS SEQRES 3 H 249 LYS THR SER GLY TYR THR PHE ASN ASN TYR TRP ILE HIS SEQRES 4 H 249 TRP VAL LYS GLN SER PRO GLY GLN GLY LEU GLU TRP ILE SEQRES 5 H 249 GLY GLU ILE ASP PRO SER ASP GLY TYR SER ASN TYR ASN SEQRES 6 H 249 GLN LYS PHE LYS GLY LYS ALA THR LEU THR VAL ASP LYS SEQRES 7 H 249 SER SER SER THR ALA TYR MET HIS LEU ASN SER LEU THR SEQRES 8 H 249 SER GLU ASP SER ALA VAL TYR TYR CYS THR SER SER THR SEQRES 9 H 249 SER VAL GLY GLY SER TRP GLY GLN GLY THR THR VAL THR SEQRES 10 H 249 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 249 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 249 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 249 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 249 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 249 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 249 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 249 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 H 249 SER ALA SER ALA ALA HIS HIS HIS HIS HIS HIS GLY ALA SEQRES 19 H 249 ALA GLU GLN LYS LEU ILE SER GLU GLU ASP LEU ASN GLY SEQRES 20 H 249 ALA ALA SEQRES 1 L 232 MET SER ASP ILE GLU LEU THR GLN SER PRO LEU SER LEU SEQRES 2 L 232 PRO VAL SER LEU GLY ASP GLN ALA SER ILE SER CYS THR SEQRES 3 L 232 SER SER GLN SER LEU LEU HIS SER ASN GLY ASP THR TYR SEQRES 4 L 232 LEU HIS TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS SEQRES 5 L 232 LEU LEU ILE TYR THR LEU SER ASN ARG PHE SER GLY VAL SEQRES 6 L 232 PRO ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE SEQRES 7 L 232 THR LEU LYS ILE SER ARG VAL GLU ALA ALA ASP LEU GLY SEQRES 8 L 232 ILE TYR PHE CYS SER GLN THR THR HIS VAL PRO TYR THR SEQRES 9 L 232 PHE GLY GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP SEQRES 10 L 232 ALA ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU SEQRES 11 L 232 GLN LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU SEQRES 12 L 232 ASN ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS SEQRES 13 L 232 VAL ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER SEQRES 14 L 232 VAL THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SEQRES 15 L 232 SER SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS SEQRES 16 L 232 HIS LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SEQRES 17 L 232 SER SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU GLY SEQRES 18 L 232 GLY GLY SER ASP TYR LYS ASP ASP ASP ASP LYS HET PEG H 301 7 HET PEG H 302 7 HET PEG H 303 7 HET PEG H 304 7 HET PG4 H 305 13 HET PG4 H 306 13 HET FMT H 307 3 HET FMT H 308 3 HET PGE L 301 10 HET PGE L 302 10 HET FMT L 303 3 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM FMT FORMIC ACID HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 PEG 4(C4 H10 O3) FORMUL 7 PG4 2(C8 H18 O5) FORMUL 9 FMT 3(C H2 O2) FORMUL 11 PGE 2(C6 H14 O4) FORMUL 14 HOH *239(H2 O) HELIX 1 AA1 GLN H 61 LYS H 64 5 4 HELIX 2 AA2 THR H 83 SER H 87 5 5 HELIX 3 AA3 SER H 127 THR H 131 5 5 HELIX 4 AA4 SER H 156 ALA H 158 5 3 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 GLU L 79 LEU L 83 5 5 HELIX 7 AA7 SER L 121 SER L 127 1 7 HELIX 8 AA8 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 4 LYS H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O SER H 25 N LYS H 3 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O MET H 80 N LEU H 20 SHEET 4 AA1 4 ALA H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 SER H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 TRP H 33 SER H 40 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLY H 44 ILE H 51 -1 O ILE H 48 N TRP H 36 SHEET 6 AA2 6 SER H 57 TYR H 59 -1 O ASN H 58 N GLU H 50 SHEET 1 AA3 4 SER H 120 LEU H 124 0 SHEET 2 AA3 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA3 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA3 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O TYR H 176 N TYR H 145 SHEET 4 AA4 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA5 3 THR H 151 TRP H 154 0 SHEET 2 AA5 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA5 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA6 4 LEU L 4 SER L 7 0 SHEET 2 AA6 4 ALA L 19 SER L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA6 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA6 4 PHE L 62 GLY L 66 -1 N SER L 63 O LYS L 74 SHEET 1 AA7 6 SER L 10 VAL L 13 0 SHEET 2 AA7 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA7 6 GLY L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA7 6 LEU L 33 GLN L 38 -1 N GLN L 38 O ILE L 85 SHEET 5 AA7 6 PRO L 44 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 AA7 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA8 4 SER L 10 VAL L 13 0 SHEET 2 AA8 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA8 4 GLY L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB1 4 ALA L 153 LEU L 154 0 SHEET 2 AB1 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB1 4 VAL L 191 THR L 197 -1 O THR L 197 N LYS L 145 SHEET 4 AB1 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.18 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.19 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.07 CISPEP 1 PHE H 146 PRO H 147 0 -10.01 CISPEP 2 GLU H 148 PRO H 149 0 1.54 CISPEP 3 SER L 7 PRO L 8 0 -5.75 CISPEP 4 VAL L 94 PRO L 95 0 0.04 CISPEP 5 TYR L 140 PRO L 141 0 1.58 SITE 1 AC1 4 LYS H 62 LYS H 66 ASP H 86 HOH H 444 SITE 1 AC2 5 TYR H 91 GLN H 105 THR H 108 GLN L 38 SITE 2 AC2 5 GLN L 42 SITE 1 AC3 4 ASP H 54 GLY H 55 TYR H 56 HOH H 401 SITE 1 AC4 6 ASN H 30 ASN H 31 TYR H 32 TRP H 33 SITE 2 AC4 6 ASP H 52 HOH H 457 SITE 1 AC5 11 HIS H 35 SER H 95 THR H 96 GLY H 99 SITE 2 AC5 11 HOH H 403 HIS L 34 TYR L 36 THR L 50 SITE 3 AC5 11 THR L 91 PGE L 302 HOH L 414 SITE 1 AC6 6 LYS H 19 LYS H 64 TYR H 79 HIS H 81 SITE 2 AC6 6 GLY L 16 GLU L 79 SITE 1 AC7 2 SER H 21 LYS H 23 SITE 1 AC8 4 GLY H 26 TYR H 32 HOH H 417 HOH H 429 SITE 1 AC9 3 LEU L 9 GLY L 100 HOH L 401 SITE 1 AD1 7 TRP H 33 GLU H 50 PG4 H 305 HOH H 403 SITE 2 AD1 7 HIS L 27D TYR L 96 HOH L 402 SITE 1 AD2 3 TYR H 56 SER L 168 HOH L 435 CRYST1 64.800 71.472 96.882 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010322 0.00000