HEADER TRANSFERASE 22-FEB-17 5X6K TITLE CRYSTAL STRUCTURE OF ADENYLATE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE KINASE ISOENZYME 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOTOTHENIA CORIICEPS; SOURCE 3 ORGANISM_TAXID: 8208; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MOON,E.BAE REVDAT 3 22-NOV-23 5X6K 1 REMARK REVDAT 2 30-JAN-19 5X6K 1 JRNL REVDAT 1 28-FEB-18 5X6K 0 JRNL AUTH S.MOON,J.KIM,E.BAE JRNL TITL STRUCTURAL ANALYSES OF ADENYLATE KINASES FROM ANTARCTIC AND JRNL TITL 2 TROPICAL FISHES FOR UNDERSTANDING COLD ADAPTATION OF ENZYMES JRNL REF SCI REP V. 7 16027 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29167503 JRNL DOI 10.1038/S41598-017-16266-9 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1649 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2268 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2860 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.460 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3024 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2944 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4082 ; 2.417 ; 2.052 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6826 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 368 ; 6.038 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;34.703 ;24.655 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 576 ;13.045 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.669 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3242 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 592 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1478 ; 2.782 ; 2.541 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1477 ; 2.777 ; 2.539 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1844 ; 3.641 ; 3.785 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1845 ; 3.645 ; 3.787 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1546 ; 4.602 ; 3.048 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1542 ; 4.604 ; 3.047 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2232 ; 6.926 ; 4.340 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3521 ; 8.397 ;21.222 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3477 ; 8.336 ;20.991 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): -30.2764 -10.6048 -21.4974 REMARK 3 T TENSOR REMARK 3 T11: 0.0251 T22: 0.0696 REMARK 3 T33: 0.0233 T12: -0.0020 REMARK 3 T13: 0.0121 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5731 L22: 0.3556 REMARK 3 L33: 0.2490 L12: -0.3592 REMARK 3 L13: -0.1323 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: -0.0062 S13: -0.0108 REMARK 3 S21: -0.0497 S22: -0.0890 S23: 0.0230 REMARK 3 S31: -0.0343 S32: 0.0494 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): -53.6696 -24.0116 -1.1652 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: 0.0420 REMARK 3 T33: 0.0534 T12: 0.0049 REMARK 3 T13: 0.0050 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 0.8192 L22: 0.4289 REMARK 3 L33: 0.0703 L12: -0.0492 REMARK 3 L13: -0.0554 L23: 0.0647 REMARK 3 S TENSOR REMARK 3 S11: 0.0754 S12: 0.0159 S13: -0.0025 REMARK 3 S21: 0.0051 S22: -0.0136 S23: -0.0605 REMARK 3 S31: -0.0109 S32: -0.0468 S33: -0.0619 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1300002881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33142 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Z83 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M ACETATE REMARK 280 PH4.5, 50% PEG 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.13200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.75150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.75150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 21.06600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.75150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.75150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.19800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.75150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.75150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 21.06600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.75150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.75150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.19800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 42.13200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 465 ILE B 5 REMARK 465 LYS B 6 REMARK 465 ASP B 7 REMARK 465 ALA B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 93 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 138 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 44 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 128 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 128 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 149 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 149 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 109 -67.19 -130.16 REMARK 500 THR A 135 -74.84 -65.31 REMARK 500 ILE B 109 -63.26 -124.35 REMARK 500 SER B 136 92.26 -175.53 REMARK 500 ASP B 141 47.62 -88.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 388 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AP5 B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5X6L RELATED DB: PDB REMARK 900 RELATED ID: 5X6J RELATED DB: PDB REMARK 900 RELATED ID: 5X6I RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE GENEBANK ACCESSION NUMBER IS XP_010788477.1 REMARK 999 FOR THIS SAMPLE SEQUENCE. DBREF 5X6K A -1 193 PDB 5X6K 5X6K -1 193 DBREF 5X6K B -1 193 PDB 5X6K 5X6K -1 193 SEQRES 1 A 195 GLY HIS MET ALA ASP LYS ILE LYS ASP ALA LYS ILE ILE SEQRES 2 A 195 PHE VAL VAL GLY GLY PRO GLY SER GLY LYS GLY THR GLN SEQRES 3 A 195 CYS GLU LYS VAL VAL ALA LYS TYR GLY TYR THR HIS LEU SEQRES 4 A 195 SER SER GLY ASP LEU LEU ARG ALA GLU VAL SER SER GLY SEQRES 5 A 195 SER GLU ARG GLY LYS GLN LEU GLN ALA ILE MET GLN LYS SEQRES 6 A 195 GLY GLU LEU VAL PRO LEU ASP THR VAL LEU ASP MET ILE SEQRES 7 A 195 LYS ASP ALA MET ILE ALA LYS ALA ASP VAL SER LYS GLY SEQRES 8 A 195 TYR LEU ILE ASP GLY TYR PRO ARG GLU VAL LYS GLN GLY SEQRES 9 A 195 GLU GLU PHE GLU LYS LYS ILE GLY LYS PRO CYS LEU LEU SEQRES 10 A 195 LEU TYR VAL ASP ALA LYS GLY GLU THR MET VAL LYS ARG SEQRES 11 A 195 LEU MET LYS ARG GLY GLU THR SER GLY ARG ALA ASP ASP SEQRES 12 A 195 ASN GLU GLU THR ILE LYS LYS ARG LEU ASP LEU TYR TYR SEQRES 13 A 195 LYS ALA THR GLU PRO VAL ILE ALA PHE TYR GLU GLY ARG SEQRES 14 A 195 GLY ILE VAL ARG LYS VAL ASP SER GLU LEU PRO VAL ASP SEQRES 15 A 195 GLU VAL PHE LYS GLN VAL SER THR ALA ILE ASP ALA LEU SEQRES 1 B 195 GLY HIS MET ALA ASP LYS ILE LYS ASP ALA LYS ILE ILE SEQRES 2 B 195 PHE VAL VAL GLY GLY PRO GLY SER GLY LYS GLY THR GLN SEQRES 3 B 195 CYS GLU LYS VAL VAL ALA LYS TYR GLY TYR THR HIS LEU SEQRES 4 B 195 SER SER GLY ASP LEU LEU ARG ALA GLU VAL SER SER GLY SEQRES 5 B 195 SER GLU ARG GLY LYS GLN LEU GLN ALA ILE MET GLN LYS SEQRES 6 B 195 GLY GLU LEU VAL PRO LEU ASP THR VAL LEU ASP MET ILE SEQRES 7 B 195 LYS ASP ALA MET ILE ALA LYS ALA ASP VAL SER LYS GLY SEQRES 8 B 195 TYR LEU ILE ASP GLY TYR PRO ARG GLU VAL LYS GLN GLY SEQRES 9 B 195 GLU GLU PHE GLU LYS LYS ILE GLY LYS PRO CYS LEU LEU SEQRES 10 B 195 LEU TYR VAL ASP ALA LYS GLY GLU THR MET VAL LYS ARG SEQRES 11 B 195 LEU MET LYS ARG GLY GLU THR SER GLY ARG ALA ASP ASP SEQRES 12 B 195 ASN GLU GLU THR ILE LYS LYS ARG LEU ASP LEU TYR TYR SEQRES 13 B 195 LYS ALA THR GLU PRO VAL ILE ALA PHE TYR GLU GLY ARG SEQRES 14 B 195 GLY ILE VAL ARG LYS VAL ASP SER GLU LEU PRO VAL ASP SEQRES 15 B 195 GLU VAL PHE LYS GLN VAL SER THR ALA ILE ASP ALA LEU HET AP5 A 201 57 HET SO4 A 202 5 HET AP5 B 201 57 HETNAM AP5 BIS(ADENOSINE)-5'-PENTAPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 AP5 2(C20 H29 N10 O22 P5) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *172(H2 O) HELIX 1 AA1 GLY A 20 GLY A 33 1 14 HELIX 2 AA2 SER A 39 SER A 49 1 11 HELIX 3 AA3 SER A 51 LYS A 63 1 13 HELIX 4 AA4 PRO A 68 LYS A 83 1 16 HELIX 5 AA5 GLU A 98 ILE A 109 1 12 HELIX 6 AA6 LYS A 121 GLY A 137 1 17 HELIX 7 AA7 ASN A 142 THR A 157 1 16 HELIX 8 AA8 THR A 157 GLY A 168 1 12 HELIX 9 AA9 PRO A 178 ALA A 192 1 15 HELIX 10 AB1 GLY B 20 GLY B 33 1 14 HELIX 11 AB2 SER B 39 SER B 49 1 11 HELIX 12 AB3 SER B 51 LYS B 63 1 13 HELIX 13 AB4 PRO B 68 LYS B 83 1 16 HELIX 14 AB5 GLU B 98 ILE B 109 1 12 HELIX 15 AB6 LYS B 121 GLY B 137 1 17 HELIX 16 AB7 ASN B 142 GLY B 168 1 27 HELIX 17 AB8 PRO B 178 ALA B 192 1 15 SHEET 1 AA1 5 THR A 35 SER A 38 0 SHEET 2 AA1 5 TYR A 90 ASP A 93 1 O ASP A 93 N LEU A 37 SHEET 3 AA1 5 ILE A 10 GLY A 15 1 N ILE A 11 O ILE A 92 SHEET 4 AA1 5 LEU A 114 ASP A 119 1 O LEU A 116 N PHE A 12 SHEET 5 AA1 5 VAL A 170 ASP A 174 1 O ARG A 171 N LEU A 115 SHEET 1 AA2 5 THR B 35 SER B 38 0 SHEET 2 AA2 5 TYR B 90 ASP B 93 1 O LEU B 91 N LEU B 37 SHEET 3 AA2 5 ILE B 10 GLY B 15 1 N ILE B 11 O ILE B 92 SHEET 4 AA2 5 LEU B 114 ASP B 119 1 O LEU B 116 N PHE B 12 SHEET 5 AA2 5 VAL B 170 ASP B 174 1 O VAL B 173 N TYR B 117 CISPEP 1 TYR A 95 PRO A 96 0 1.28 CISPEP 2 TYR B 95 PRO B 96 0 3.48 SITE 1 AC1 35 GLY A 16 PRO A 17 GLY A 18 SER A 19 SITE 2 AC1 35 GLY A 20 LYS A 21 GLY A 22 THR A 23 SITE 3 AC1 35 SER A 39 GLY A 40 LEU A 43 ARG A 44 SITE 4 AC1 35 MET A 61 GLU A 65 VAL A 67 GLY A 94 SITE 5 AC1 35 TYR A 95 ARG A 97 GLN A 101 ARG A 128 SITE 6 AC1 35 ARG A 132 ARG A 138 ARG A 149 SER A 175 SITE 7 AC1 35 LEU A 177 VAL A 179 HOH A 302 HOH A 310 SITE 8 AC1 35 HOH A 311 HOH A 312 HOH A 313 HOH A 314 SITE 9 AC1 35 HOH A 329 HOH A 337 HOH A 338 SITE 1 AC2 6 ARG A 53 ASP A 74 ASP A 78 HOH A 324 SITE 2 AC2 6 ARG B 138 ALA B 139 SITE 1 AC3 39 GLY B 16 PRO B 17 GLY B 18 SER B 19 SITE 2 AC3 39 GLY B 20 LYS B 21 GLY B 22 THR B 23 SITE 3 AC3 39 SER B 39 GLY B 40 LEU B 43 ARG B 44 SITE 4 AC3 39 MET B 61 GLU B 65 LEU B 66 VAL B 67 SITE 5 AC3 39 GLY B 94 TYR B 95 ARG B 97 GLN B 101 SITE 6 AC3 39 ARG B 128 ARG B 132 ARG B 138 ARG B 149 SITE 7 AC3 39 SER B 175 LEU B 177 VAL B 179 HOH B 302 SITE 8 AC3 39 HOH B 303 HOH B 307 HOH B 309 HOH B 310 SITE 9 AC3 39 HOH B 317 HOH B 318 HOH B 320 HOH B 339 SITE 10 AC3 39 HOH B 348 HOH B 360 HOH B 373 CRYST1 105.503 105.503 84.264 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009478 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011867 0.00000