HEADER TRANSFERASE/TRANSFERASE INHIBITOR 02-MAR-17 5X8I TITLE CRYSTAL STRUCTURE OF HUMAN CLK1 IN COMPLEX WITH COMPOUND 25 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE CLK1; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 148-484; COMPND 5 SYNONYM: CDC-LIKE KINASE 1; COMPND 6 EC: 2.7.12.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLK1, CLK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, COMPLEX, KINASE, CLK1, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.Z.SUN,G.F.LIN,L.L.LI,X.T.JIN,L.Y.HUANG,G.ZHANG,Y.Q.WEI,G.W.LU, AUTHOR 2 S.Y.YANG REVDAT 2 22-NOV-23 5X8I 1 REMARK REVDAT 1 16-AUG-17 5X8I 0 JRNL AUTH Q.Z.SUN,G.F.LIN,L.L.LI,X.T.JIN,L.Y.HUANG,G.ZHANG,W.YANG, JRNL AUTH 2 K.CHEN,R.XIANG,C.CHEN,Y.Q.WEI,G.W.LU,S.Y.YANG JRNL TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS OF CDC2-LIKE JRNL TITL 2 KINASE 1 (CLK1) AS A NEW CLASS OF AUTOPHAGY INDUCERS JRNL REF J. MED. CHEM. V. 60 6337 2017 JRNL REFN ISSN 1520-4804 JRNL PMID 28692292 JRNL DOI 10.1021/ACS.JMEDCHEM.7B00665 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 58718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6048 - 5.2403 0.95 2538 153 0.1942 0.2049 REMARK 3 2 5.2403 - 4.1619 0.99 2676 138 0.1500 0.1818 REMARK 3 3 4.1619 - 3.6365 1.00 2670 127 0.1457 0.1911 REMARK 3 4 3.6365 - 3.3043 1.00 2688 124 0.1550 0.1810 REMARK 3 5 3.3043 - 3.0676 1.00 2674 132 0.1616 0.1568 REMARK 3 6 3.0676 - 2.8869 1.00 2690 115 0.1648 0.2111 REMARK 3 7 2.8869 - 2.7424 1.00 2659 127 0.1692 0.2116 REMARK 3 8 2.7424 - 2.6230 1.00 2668 134 0.1729 0.1969 REMARK 3 9 2.6230 - 2.5221 1.00 2640 158 0.1705 0.2336 REMARK 3 10 2.5221 - 2.4351 1.00 2676 138 0.1694 0.2228 REMARK 3 11 2.4351 - 2.3590 1.00 2661 146 0.1696 0.2423 REMARK 3 12 2.3590 - 2.2916 1.00 2708 109 0.1688 0.2222 REMARK 3 13 2.2916 - 2.2313 1.00 2669 122 0.1622 0.1982 REMARK 3 14 2.2313 - 2.1768 1.00 2650 171 0.1636 0.1991 REMARK 3 15 2.1768 - 2.1273 1.00 2641 137 0.1682 0.2086 REMARK 3 16 2.1273 - 2.0821 1.00 2666 154 0.1763 0.2435 REMARK 3 17 2.0821 - 2.0404 1.00 2648 150 0.1719 0.2475 REMARK 3 18 2.0404 - 2.0019 1.00 2657 143 0.1784 0.2344 REMARK 3 19 2.0019 - 1.9662 1.00 2631 165 0.1831 0.2420 REMARK 3 20 1.9662 - 1.9329 1.00 2670 149 0.1860 0.2572 REMARK 3 21 1.9329 - 1.9017 0.99 2638 108 0.1845 0.2081 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5598 REMARK 3 ANGLE : 1.129 7575 REMARK 3 CHIRALITY : 0.057 810 REMARK 3 PLANARITY : 0.006 959 REMARK 3 DIHEDRAL : 15.902 3313 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5X8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97849 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58842 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 15.90 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 15.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : 0.43100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2VAG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% (V/V) PEG 200, 20% (V/V) TACSIMATE REMARK 280 (PH 7.0), 0.1M HEPES (PH 9.0), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 190.48067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 95.24033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 142.86050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.62017 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 238.10083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 147 REMARK 465 HIS B 148 REMARK 465 LEU B 149 REMARK 465 ILE B 150 REMARK 465 CYS B 151 REMARK 465 GLN B 152 REMARK 465 SER B 153 REMARK 465 GLY B 154 REMARK 465 LYS B 482 REMARK 465 SER B 483 REMARK 465 ILE B 484 REMARK 465 LEU B 485 REMARK 465 GLU B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 465 HIS B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 HIS B 492 REMARK 465 MET A 147 REMARK 465 HIS A 148 REMARK 465 LEU A 149 REMARK 465 ILE A 150 REMARK 465 CYS A 151 REMARK 465 GLN A 152 REMARK 465 SER A 153 REMARK 465 LYS A 482 REMARK 465 SER A 483 REMARK 465 ILE A 484 REMARK 465 LEU A 485 REMARK 465 GLU A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 469 CZ NH1 NH2 REMARK 470 ARG A 469 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 881 O HOH B 902 1.86 REMARK 500 O HOH A 704 O HOH A 827 1.88 REMARK 500 NE ARG B 311 O HOH B 601 1.89 REMARK 500 O HOH A 782 O HOH A 845 1.91 REMARK 500 O HOH A 603 O HOH A 879 1.94 REMARK 500 O HOH B 657 O HOH B 861 1.97 REMARK 500 O HOH A 772 O HOH A 868 1.97 REMARK 500 O HOH A 651 O HOH A 861 1.97 REMARK 500 NE ARG A 311 O HOH A 601 1.98 REMARK 500 N GLY A 154 O HOH A 602 1.98 REMARK 500 OH TYR B 305 CD LYS B 310 1.98 REMARK 500 O HOH A 719 O HOH A 792 2.00 REMARK 500 O HOH B 784 O HOH B 801 2.02 REMARK 500 O HOH B 657 O HOH B 750 2.03 REMARK 500 O HOH A 719 O HOH A 857 2.04 REMARK 500 NZ LYS B 437 O HOH B 602 2.04 REMARK 500 O HOH A 852 O HOH A 876 2.07 REMARK 500 O HOH B 874 O HOH B 903 2.07 REMARK 500 O HOH A 709 O HOH A 717 2.10 REMARK 500 O HOH A 896 O HOH A 900 2.10 REMARK 500 O HOH B 724 O HOH B 873 2.14 REMARK 500 O HOH B 609 O HOH B 807 2.14 REMARK 500 OD2 ASP A 333 O HOH A 603 2.14 REMARK 500 NZ LYS B 434 O HOH B 603 2.15 REMARK 500 NZ LYS B 400 O HOH B 604 2.15 REMARK 500 O HOH A 734 O HOH A 818 2.15 REMARK 500 O HOH B 876 O HOH A 818 2.16 REMARK 500 O HOH A 831 O HOH A 850 2.16 REMARK 500 O HOH B 698 O HOH B 828 2.16 REMARK 500 OH TYR B 305 O HOH B 605 2.17 REMARK 500 O HOH B 841 O HOH B 842 2.17 REMARK 500 O HOH A 875 O HOH A 921 2.18 REMARK 500 NZ LYS A 434 O HOH A 604 2.18 REMARK 500 NH2 ARG B 431 O HOH B 606 2.19 REMARK 500 O HOH A 672 O HOH A 867 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 850 O HOH A 860 6564 1.93 REMARK 500 O HOH B 673 O HOH A 838 6564 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 307 C - N - CD ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 287 -12.70 79.09 REMARK 500 ASP B 325 69.37 71.83 REMARK 500 SER B 341 157.49 72.76 REMARK 500 SER B 357 -156.59 -151.18 REMARK 500 LEU B 458 30.90 -95.43 REMARK 500 SER A 158 16.50 51.60 REMARK 500 ASP A 165 137.24 -178.00 REMARK 500 THR A 287 -11.57 79.94 REMARK 500 ASP A 325 69.85 71.45 REMARK 500 SER A 341 158.08 74.05 REMARK 500 SER A 357 -154.64 -153.44 REMARK 500 LEU A 479 6.16 -66.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 908 DISTANCE = 7.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SQZ B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SQZ A 501 DBREF 5X8I B 148 484 UNP P49759 CLK1_HUMAN 148 484 DBREF 5X8I A 148 484 UNP P49759 CLK1_HUMAN 148 484 SEQADV 5X8I MET B 147 UNP P49759 EXPRESSION TAG SEQADV 5X8I ALA B 432 UNP P49759 ARG 432 ENGINEERED MUTATION SEQADV 5X8I LEU B 485 UNP P49759 EXPRESSION TAG SEQADV 5X8I GLU B 486 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS B 487 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS B 488 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS B 489 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS B 490 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS B 491 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS B 492 UNP P49759 EXPRESSION TAG SEQADV 5X8I MET A 147 UNP P49759 EXPRESSION TAG SEQADV 5X8I ALA A 432 UNP P49759 ARG 432 ENGINEERED MUTATION SEQADV 5X8I LEU A 485 UNP P49759 EXPRESSION TAG SEQADV 5X8I GLU A 486 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS A 487 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS A 488 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS A 489 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS A 490 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS A 491 UNP P49759 EXPRESSION TAG SEQADV 5X8I HIS A 492 UNP P49759 EXPRESSION TAG SEQRES 1 B 346 MET HIS LEU ILE CYS GLN SER GLY ASP VAL LEU SER ALA SEQRES 2 B 346 ARG TYR GLU ILE VAL ASP THR LEU GLY GLU GLY ALA PHE SEQRES 3 B 346 GLY LYS VAL VAL GLU CYS ILE ASP HIS LYS ALA GLY GLY SEQRES 4 B 346 ARG HIS VAL ALA VAL LYS ILE VAL LYS ASN VAL ASP ARG SEQRES 5 B 346 TYR CYS GLU ALA ALA ARG SER GLU ILE GLN VAL LEU GLU SEQRES 6 B 346 HIS LEU ASN THR THR ASP PRO ASN SER THR PHE ARG CYS SEQRES 7 B 346 VAL GLN MET LEU GLU TRP PHE GLU HIS HIS GLY HIS ILE SEQRES 8 B 346 CYS ILE VAL PHE GLU LEU LEU GLY LEU SER THR TYR ASP SEQRES 9 B 346 PHE ILE LYS GLU ASN GLY PHE LEU PRO PHE ARG LEU ASP SEQRES 10 B 346 HIS ILE ARG LYS MET ALA TYR GLN ILE CYS LYS SER VAL SEQRES 11 B 346 ASN PHE LEU HIS SER ASN LYS LEU THR HIS THR ASP LEU SEQRES 12 B 346 LYS PRO GLU ASN ILE LEU PHE VAL GLN SER ASP TYR THR SEQRES 13 B 346 GLU ALA TYR ASN PRO LYS ILE LYS ARG ASP GLU ARG THR SEQRES 14 B 346 LEU ILE ASN PRO ASP ILE LYS VAL VAL ASP PHE GLY SER SEQRES 15 B 346 ALA THR TYR ASP ASP GLU HIS HIS SER THR LEU VAL SER SEQRES 16 B 346 THR ARG HIS TYR ARG ALA PRO GLU VAL ILE LEU ALA LEU SEQRES 17 B 346 GLY TRP SER GLN PRO CYS ASP VAL TRP SER ILE GLY CYS SEQRES 18 B 346 ILE LEU ILE GLU TYR TYR LEU GLY PHE THR VAL PHE PRO SEQRES 19 B 346 THR HIS ASP SER LYS GLU HIS LEU ALA MET MET GLU ARG SEQRES 20 B 346 ILE LEU GLY PRO LEU PRO LYS HIS MET ILE GLN LYS THR SEQRES 21 B 346 ARG LYS ARG LYS TYR PHE HIS HIS ASP ARG LEU ASP TRP SEQRES 22 B 346 ASP GLU HIS SER SER ALA GLY ARG TYR VAL SER ARG ALA SEQRES 23 B 346 CYS LYS PRO LEU LYS GLU PHE MET LEU SER GLN ASP VAL SEQRES 24 B 346 GLU HIS GLU ARG LEU PHE ASP LEU ILE GLN LYS MET LEU SEQRES 25 B 346 GLU TYR ASP PRO ALA LYS ARG ILE THR LEU ARG GLU ALA SEQRES 26 B 346 LEU LYS HIS PRO PHE PHE ASP LEU LEU LYS LYS SER ILE SEQRES 27 B 346 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 346 MET HIS LEU ILE CYS GLN SER GLY ASP VAL LEU SER ALA SEQRES 2 A 346 ARG TYR GLU ILE VAL ASP THR LEU GLY GLU GLY ALA PHE SEQRES 3 A 346 GLY LYS VAL VAL GLU CYS ILE ASP HIS LYS ALA GLY GLY SEQRES 4 A 346 ARG HIS VAL ALA VAL LYS ILE VAL LYS ASN VAL ASP ARG SEQRES 5 A 346 TYR CYS GLU ALA ALA ARG SER GLU ILE GLN VAL LEU GLU SEQRES 6 A 346 HIS LEU ASN THR THR ASP PRO ASN SER THR PHE ARG CYS SEQRES 7 A 346 VAL GLN MET LEU GLU TRP PHE GLU HIS HIS GLY HIS ILE SEQRES 8 A 346 CYS ILE VAL PHE GLU LEU LEU GLY LEU SER THR TYR ASP SEQRES 9 A 346 PHE ILE LYS GLU ASN GLY PHE LEU PRO PHE ARG LEU ASP SEQRES 10 A 346 HIS ILE ARG LYS MET ALA TYR GLN ILE CYS LYS SER VAL SEQRES 11 A 346 ASN PHE LEU HIS SER ASN LYS LEU THR HIS THR ASP LEU SEQRES 12 A 346 LYS PRO GLU ASN ILE LEU PHE VAL GLN SER ASP TYR THR SEQRES 13 A 346 GLU ALA TYR ASN PRO LYS ILE LYS ARG ASP GLU ARG THR SEQRES 14 A 346 LEU ILE ASN PRO ASP ILE LYS VAL VAL ASP PHE GLY SER SEQRES 15 A 346 ALA THR TYR ASP ASP GLU HIS HIS SER THR LEU VAL SER SEQRES 16 A 346 THR ARG HIS TYR ARG ALA PRO GLU VAL ILE LEU ALA LEU SEQRES 17 A 346 GLY TRP SER GLN PRO CYS ASP VAL TRP SER ILE GLY CYS SEQRES 18 A 346 ILE LEU ILE GLU TYR TYR LEU GLY PHE THR VAL PHE PRO SEQRES 19 A 346 THR HIS ASP SER LYS GLU HIS LEU ALA MET MET GLU ARG SEQRES 20 A 346 ILE LEU GLY PRO LEU PRO LYS HIS MET ILE GLN LYS THR SEQRES 21 A 346 ARG LYS ARG LYS TYR PHE HIS HIS ASP ARG LEU ASP TRP SEQRES 22 A 346 ASP GLU HIS SER SER ALA GLY ARG TYR VAL SER ARG ALA SEQRES 23 A 346 CYS LYS PRO LEU LYS GLU PHE MET LEU SER GLN ASP VAL SEQRES 24 A 346 GLU HIS GLU ARG LEU PHE ASP LEU ILE GLN LYS MET LEU SEQRES 25 A 346 GLU TYR ASP PRO ALA LYS ARG ILE THR LEU ARG GLU ALA SEQRES 26 A 346 LEU LYS HIS PRO PHE PHE ASP LEU LEU LYS LYS SER ILE SEQRES 27 A 346 LEU GLU HIS HIS HIS HIS HIS HIS HET SQZ B 501 31 HET SQZ A 501 31 HETNAM SQZ 5-[1-[(1S)-1-(4-FLUOROPHENYL)ETHYL]-[1,2,3]TRIAZOLO[4, HETNAM 2 SQZ 5-C]QUINOLIN-8-YL]-1,3-BENZOXAZOLE HETSYN SQZ (S)-5-(1-(1-(4-FLUOROPHENYL)ETHYL)-1H-[1,2, HETSYN 2 SQZ 3]TRIAZOLO[4,5-C]QUINOLIN-8-YL)BENZO[D]OXAZOLE FORMUL 3 SQZ 2(C24 H16 F N5 O) FORMUL 5 HOH *630(H2 O) HELIX 1 AA1 VAL B 196 ASP B 217 1 22 HELIX 2 AA2 SER B 247 ASN B 255 1 9 HELIX 3 AA3 ARG B 261 ASN B 282 1 22 HELIX 4 AA4 LYS B 290 GLU B 292 5 3 HELIX 5 AA5 THR B 342 ARG B 346 5 5 HELIX 6 AA6 ALA B 347 LEU B 352 1 6 HELIX 7 AA7 GLN B 358 GLY B 375 1 18 HELIX 8 AA8 ASP B 383 GLY B 396 1 14 HELIX 9 AA9 PRO B 399 THR B 406 1 8 HELIX 10 AB1 LYS B 408 LYS B 410 5 3 HELIX 11 AB2 SER B 423 CYS B 433 1 11 HELIX 12 AB3 PRO B 435 MET B 440 5 6 HELIX 13 AB4 ASP B 444 LEU B 458 1 15 HELIX 14 AB5 THR B 467 LEU B 472 1 6 HELIX 15 AB6 LYS B 473 LYS B 481 5 9 HELIX 16 AB7 VAL A 196 ASP A 217 1 22 HELIX 17 AB8 SER A 247 ASN A 255 1 9 HELIX 18 AB9 ARG A 261 ASN A 282 1 22 HELIX 19 AC1 LYS A 290 GLU A 292 5 3 HELIX 20 AC2 THR A 342 ARG A 346 5 5 HELIX 21 AC3 ALA A 347 LEU A 352 1 6 HELIX 22 AC4 GLN A 358 GLY A 375 1 18 HELIX 23 AC5 ASP A 383 GLY A 396 1 14 HELIX 24 AC6 PRO A 399 THR A 406 1 8 HELIX 25 AC7 LYS A 408 LYS A 410 5 3 HELIX 26 AC8 SER A 423 CYS A 433 1 11 HELIX 27 AC9 PRO A 435 MET A 440 5 6 HELIX 28 AD1 ASP A 444 LEU A 458 1 15 HELIX 29 AD2 THR A 467 LEU A 472 1 6 HELIX 30 AD3 LYS A 473 LYS A 481 5 9 SHEET 1 AA1 6 VAL B 156 LEU B 157 0 SHEET 2 AA1 6 TYR B 161 GLY B 170 -1 O TYR B 161 N LEU B 157 SHEET 3 AA1 6 GLY B 173 ASP B 180 -1 O GLU B 177 N VAL B 164 SHEET 4 AA1 6 VAL B 188 VAL B 193 -1 O VAL B 190 N VAL B 176 SHEET 5 AA1 6 HIS B 236 GLU B 242 -1 O PHE B 241 N ALA B 189 SHEET 6 AA1 6 MET B 227 HIS B 233 -1 N PHE B 231 O CYS B 238 SHEET 1 AA2 2 LEU B 284 THR B 285 0 SHEET 2 AA2 2 THR B 330 TYR B 331 -1 O THR B 330 N THR B 285 SHEET 1 AA3 2 ILE B 294 PHE B 296 0 SHEET 2 AA3 2 ILE B 321 VAL B 323 -1 O LYS B 322 N LEU B 295 SHEET 1 AA4 2 TYR B 301 ASN B 306 0 SHEET 2 AA4 2 ARG B 311 LEU B 316 -1 O GLU B 313 N ALA B 304 SHEET 1 AA5 2 PHE B 412 HIS B 413 0 SHEET 2 AA5 2 ARG B 416 LEU B 417 -1 O ARG B 416 N HIS B 413 SHEET 1 AA6 6 VAL A 156 LEU A 157 0 SHEET 2 AA6 6 TYR A 161 GLY A 170 -1 O TYR A 161 N LEU A 157 SHEET 3 AA6 6 GLY A 173 ASP A 180 -1 O GLU A 177 N ASP A 165 SHEET 4 AA6 6 VAL A 188 VAL A 193 -1 O VAL A 190 N VAL A 176 SHEET 5 AA6 6 HIS A 236 GLU A 242 -1 O PHE A 241 N ALA A 189 SHEET 6 AA6 6 MET A 227 HIS A 233 -1 N PHE A 231 O CYS A 238 SHEET 1 AA7 2 LEU A 284 THR A 285 0 SHEET 2 AA7 2 THR A 330 TYR A 331 -1 O THR A 330 N THR A 285 SHEET 1 AA8 2 ILE A 294 PHE A 296 0 SHEET 2 AA8 2 ILE A 321 VAL A 323 -1 O LYS A 322 N LEU A 295 SHEET 1 AA9 2 TYR A 301 ASN A 306 0 SHEET 2 AA9 2 ARG A 311 LEU A 316 -1 O GLU A 313 N ALA A 304 SHEET 1 AB1 2 PHE A 412 HIS A 413 0 SHEET 2 AB1 2 ARG A 416 LEU A 417 -1 O ARG A 416 N HIS A 413 CISPEP 1 LYS B 308 ILE B 309 0 -11.59 SITE 1 AC1 13 LEU B 167 GLY B 168 PHE B 172 VAL B 175 SITE 2 AC1 13 ALA B 189 LYS B 191 PHE B 241 LEU B 244 SITE 3 AC1 13 GLU B 292 ASN B 293 LEU B 295 ASP B 325 SITE 4 AC1 13 HOH B 795 SITE 1 AC2 15 LEU A 167 GLY A 168 PHE A 172 VAL A 175 SITE 2 AC2 15 ALA A 189 LYS A 191 PHE A 241 GLU A 242 SITE 3 AC2 15 LEU A 244 GLU A 292 ASN A 293 LEU A 295 SITE 4 AC2 15 VAL A 324 ASP A 325 HOH A 776 CRYST1 68.330 68.330 285.721 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014635 0.008449 0.000000 0.00000 SCALE2 0.000000 0.016899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003500 0.00000