HEADER METAL BINDING PROTEIN 06-MAR-17 5X9A TITLE CRYSTAL STRUCTURE OF CALAXIN WITH CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALAXIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CIONA INTESTINALIS; SOURCE 3 ORGANISM_COMMON: TRANSPARENT SEA SQUIRT; SOURCE 4 ORGANISM_TAXID: 7719; SOURCE 5 GENE: CALX, CALX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EF-HAND, CALCIUM-BINDING PROTEIN, NEURONAL CALCIUM SENSOR, CALCIUM KEYWDS 2 ION, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.SHOJIMA,F.HOU,Y.TAKAHASHI,M.OKAI,K.MIZUNO,K.INABA,T.MIYAKAWA, AUTHOR 2 M.TANOKURA REVDAT 2 27-MAR-24 5X9A 1 LINK REVDAT 1 14-MAR-18 5X9A 0 JRNL AUTH T.SHOJIMA,F.HOU,Y.TAKAHASHI,Y.MATSUMURA,M.OKAI,A.NAKAMURA, JRNL AUTH 2 K.MIZUNO,K.INABA,M.KOJIMA,T.MIYAKAWA,M.TANOKURA JRNL TITL CRYSTAL STRUCTURE OF A CA2+-DEPENDENT REGULATOR OF FLAGELLAR JRNL TITL 2 MOTILITY REVEALS THE OPEN-CLOSED STRUCTURAL TRANSITION JRNL REF SCI REP V. 8 2014 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29386625 JRNL DOI 10.1038/S41598-018-19898-7 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 38347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2550 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.579 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3227 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3117 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4322 ; 1.988 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7232 ; 0.946 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 383 ; 6.451 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;30.470 ;25.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 651 ;15.231 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 479 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3523 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 691 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1541 ; 2.555 ; 2.274 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1540 ; 2.546 ; 2.272 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1921 ; 3.570 ; 3.390 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1922 ; 3.571 ; 3.392 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1686 ; 3.655 ; 2.757 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1686 ; 3.654 ; 2.757 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2402 ; 5.646 ; 3.947 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4059 ; 7.078 ;18.746 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4060 ; 7.077 ;18.750 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5X9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1300003096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40393 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM ACETATE, PEG 8000, PH 6.2, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.77000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.15500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.38500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 129 REMARK 465 GLN A 130 REMARK 465 PRO A 131 REMARK 465 THR A 132 REMARK 465 GLU A 133 REMARK 465 GLU A 134 REMARK 465 ASP A 135 REMARK 465 GLN A 200 REMARK 465 CYS A 201 REMARK 465 ARG A 202 REMARK 465 GLY A 203 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLN B 200 REMARK 465 CYS B 201 REMARK 465 ARG B 202 REMARK 465 GLY B 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 49 O HOH B 401 2.04 REMARK 500 OG1 THR A 94 O HOH A 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 73 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 73 CB - CG - OD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 44 NE - CZ - NH1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 44 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP B 73 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET B 151 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 6 -38.58 -25.14 REMARK 500 GLU B 176 45.77 -109.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 5 GLN A 6 140.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 71 OD1 REMARK 620 2 ASP A 73 OD2 84.5 REMARK 620 3 ASP A 75 OD1 85.6 80.4 REMARK 620 4 TYR A 77 O 84.7 157.5 79.2 REMARK 620 5 GLU A 82 OE1 109.1 123.8 151.9 78.5 REMARK 620 6 GLU A 82 OE2 95.8 73.5 153.6 127.3 51.4 REMARK 620 7 HOH A 448 O 163.5 86.5 79.3 98.8 87.4 94.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD1 REMARK 620 2 ASN A 109 OD1 83.6 REMARK 620 3 ASP A 111 OD1 87.7 74.7 REMARK 620 4 TYR A 113 O 86.2 152.0 78.9 REMARK 620 5 GLU A 118 OE1 100.3 130.7 153.8 76.8 REMARK 620 6 GLU A 118 OE2 102.6 77.4 148.9 130.4 53.6 REMARK 620 7 HOH A 474 O 175.1 95.4 87.4 92.6 84.1 81.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 138 OE2 REMARK 620 2 ASP A 142 OD1 88.9 REMARK 620 3 ASP A 142 OD2 100.7 51.3 REMARK 620 4 HOH A 470 O 68.8 82.0 132.9 REMARK 620 5 HOH A 480 O 80.9 151.0 157.4 69.0 REMARK 620 6 ASP B 135 O 157.5 82.8 90.4 89.2 96.4 REMARK 620 7 HOH B 511 O 115.6 129.6 80.1 146.7 79.0 85.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 152 OD1 REMARK 620 2 ASP A 154 OD1 86.0 REMARK 620 3 ASP A 156 OD1 83.4 65.7 REMARK 620 4 ARG A 158 O 83.9 136.6 71.2 REMARK 620 5 ASP A 163 OD1 102.5 142.7 150.6 80.7 REMARK 620 6 HOH A 425 O 162.9 87.5 79.5 90.0 92.3 REMARK 620 7 HOH A 436 O 101.5 71.2 136.1 152.3 71.5 91.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 71 OD1 REMARK 620 2 ASP B 73 OD1 83.0 REMARK 620 3 ASP B 75 OD1 87.8 79.0 REMARK 620 4 TYR B 77 O 89.9 158.0 80.0 REMARK 620 5 GLU B 82 OE1 107.0 125.3 152.2 76.8 REMARK 620 6 GLU B 82 OE2 94.2 74.3 152.7 127.1 51.7 REMARK 620 7 HOH B 507 O 166.6 86.5 82.1 97.0 85.8 90.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 107 OD1 REMARK 620 2 ASN B 109 OD1 82.6 REMARK 620 3 ASP B 111 OD1 88.4 75.7 REMARK 620 4 TYR B 113 O 84.3 154.1 81.7 REMARK 620 5 GLU B 118 OE1 110.7 124.4 152.8 81.3 REMARK 620 6 GLU B 118 OE2 100.8 72.2 145.0 132.5 52.5 REMARK 620 7 HOH B 488 O 167.2 87.3 81.3 101.7 81.5 83.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 152 OD1 REMARK 620 2 ASP B 154 OD1 83.8 REMARK 620 3 ASP B 156 OD1 86.4 67.6 REMARK 620 4 ARG B 158 O 84.9 145.2 79.0 REMARK 620 5 ASP B 163 OD1 99.4 131.8 160.0 82.5 REMARK 620 6 HOH B 404 O 102.0 61.0 126.3 153.7 71.4 REMARK 620 7 HOH B 476 O 167.1 94.0 81.0 89.9 91.6 87.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 DBREF 5X9A A 1 203 UNP Q8T893 Q8T893_CIOIN 1 203 DBREF 5X9A B 1 203 UNP Q8T893 Q8T893_CIOIN 1 203 SEQADV 5X9A MET A -19 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A GLY A -18 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A SER A -17 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A SER A -16 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS A -15 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS A -14 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS A -13 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS A -12 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS A -11 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS A -10 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A SER A -9 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A SER A -8 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A GLY A -7 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A LEU A -6 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A VAL A -5 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A PRO A -4 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A ARG A -3 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A GLY A -2 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A SER A -1 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS A 0 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A MET B -19 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A GLY B -18 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A SER B -17 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A SER B -16 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS B -15 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS B -14 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS B -13 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS B -12 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS B -11 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS B -10 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A SER B -9 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A SER B -8 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A GLY B -7 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A LEU B -6 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A VAL B -5 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A PRO B -4 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A ARG B -3 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A GLY B -2 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A SER B -1 UNP Q8T893 EXPRESSION TAG SEQADV 5X9A HIS B 0 UNP Q8T893 EXPRESSION TAG SEQRES 1 A 223 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 223 LEU VAL PRO ARG GLY SER HIS MET SER LYS LYS ASN GLN SEQRES 3 A 223 LYS LEU ALA GLU GLU LEU TYR LYS THR SER CYS GLN LYS SEQRES 4 A 223 HIS PHE THR LYS THR GLU VAL GLU SER LEU ILE ILE CYS SEQRES 5 A 223 TYR LYS ASN LEU LEU GLU GLY LEU LYS MET ASP ARG ASN SEQRES 6 A 223 LEU PHE ARG ASP ILE LEU HIS GLN LYS PHE ASN MET THR SEQRES 7 A 223 GLU ASP LEU LEU MET ASP ARG VAL PHE ARG ALA PHE ASP SEQRES 8 A 223 LYS ASP SER ASP SER TYR ILE SER LEU THR GLU TRP VAL SEQRES 9 A 223 GLU GLY LEU SER VAL PHE LEU ARG GLY THR LEU ASP GLU SEQRES 10 A 223 LYS MET GLU TYR THR PHE THR VAL PHE ASP LEU ASN GLY SEQRES 11 A 223 ASP GLY TYR ILE SER ARG GLU GLU MET PHE GLN MET LEU SEQRES 12 A 223 LYS THR CYS LEU VAL LYS GLN PRO THR GLU GLU ASP PRO SEQRES 13 A 223 ASP GLU GLY ILE LYS ASP LEU VAL GLU ILE ALA LEU LYS SEQRES 14 A 223 LYS MET ASP HIS ASP HIS ASP SER ARG LEU SER LYS LYS SEQRES 15 A 223 ASP PHE LYS ASP ALA VAL LEU ILE GLU PRO LEU LEU LEU SEQRES 16 A 223 GLU ALA PHE GLY LYS CYS LEU PRO ASP GLU LYS SER SER SEQRES 17 A 223 GLU ILE PHE GLU TYR HIS VAL LEU GLY VAL LYS GLN CYS SEQRES 18 A 223 ARG GLY SEQRES 1 B 223 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 223 LEU VAL PRO ARG GLY SER HIS MET SER LYS LYS ASN GLN SEQRES 3 B 223 LYS LEU ALA GLU GLU LEU TYR LYS THR SER CYS GLN LYS SEQRES 4 B 223 HIS PHE THR LYS THR GLU VAL GLU SER LEU ILE ILE CYS SEQRES 5 B 223 TYR LYS ASN LEU LEU GLU GLY LEU LYS MET ASP ARG ASN SEQRES 6 B 223 LEU PHE ARG ASP ILE LEU HIS GLN LYS PHE ASN MET THR SEQRES 7 B 223 GLU ASP LEU LEU MET ASP ARG VAL PHE ARG ALA PHE ASP SEQRES 8 B 223 LYS ASP SER ASP SER TYR ILE SER LEU THR GLU TRP VAL SEQRES 9 B 223 GLU GLY LEU SER VAL PHE LEU ARG GLY THR LEU ASP GLU SEQRES 10 B 223 LYS MET GLU TYR THR PHE THR VAL PHE ASP LEU ASN GLY SEQRES 11 B 223 ASP GLY TYR ILE SER ARG GLU GLU MET PHE GLN MET LEU SEQRES 12 B 223 LYS THR CYS LEU VAL LYS GLN PRO THR GLU GLU ASP PRO SEQRES 13 B 223 ASP GLU GLY ILE LYS ASP LEU VAL GLU ILE ALA LEU LYS SEQRES 14 B 223 LYS MET ASP HIS ASP HIS ASP SER ARG LEU SER LYS LYS SEQRES 15 B 223 ASP PHE LYS ASP ALA VAL LEU ILE GLU PRO LEU LEU LEU SEQRES 16 B 223 GLU ALA PHE GLY LYS CYS LEU PRO ASP GLU LYS SER SER SEQRES 17 B 223 GLU ILE PHE GLU TYR HIS VAL LEU GLY VAL LYS GLN CYS SEQRES 18 B 223 ARG GLY HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HET EDO B 304 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CA 7(CA 2+) FORMUL 10 EDO C2 H6 O2 FORMUL 11 HOH *225(H2 O) HELIX 1 AA1 ASN A 5 SER A 16 1 12 HELIX 2 AA2 THR A 22 LEU A 37 1 16 HELIX 3 AA3 ARG A 44 ASN A 56 1 13 HELIX 4 AA4 GLU A 59 ASP A 71 1 13 HELIX 5 AA5 SER A 79 GLY A 93 1 15 HELIX 6 AA6 THR A 94 ASP A 107 1 14 HELIX 7 AA7 ARG A 116 LEU A 127 1 12 HELIX 8 AA8 ASP A 137 ASP A 152 1 16 HELIX 9 AA9 LYS A 161 ALA A 167 1 7 HELIX 10 AB1 GLU A 171 GLY A 179 1 9 HELIX 11 AB2 LYS A 180 LEU A 182 5 3 HELIX 12 AB3 ASP A 184 GLY A 197 1 14 HELIX 13 AB4 LYS B 3 SER B 16 1 14 HELIX 14 AB5 THR B 22 LEU B 37 1 16 HELIX 15 AB6 ARG B 44 ASN B 56 1 13 HELIX 16 AB7 GLU B 59 ASP B 71 1 13 HELIX 17 AB8 SER B 79 GLY B 93 1 15 HELIX 18 AB9 THR B 94 ASP B 107 1 14 HELIX 19 AC1 ARG B 116 GLN B 130 1 15 HELIX 20 AC2 PRO B 136 ASP B 152 1 17 HELIX 21 AC3 LYS B 161 GLU B 171 1 11 HELIX 22 AC4 PRO B 172 ALA B 177 5 6 HELIX 23 AC5 ASP B 184 GLY B 197 1 14 SHEET 1 AA1 2 MET A 42 ASP A 43 0 SHEET 2 AA1 2 TYR A 77 ILE A 78 -1 O ILE A 78 N MET A 42 SHEET 1 AA2 2 TYR A 113 SER A 115 0 SHEET 2 AA2 2 ARG A 158 SER A 160 -1 O LEU A 159 N ILE A 114 SHEET 1 AA3 2 MET B 42 ASP B 43 0 SHEET 2 AA3 2 TYR B 77 ILE B 78 -1 O ILE B 78 N MET B 42 SHEET 1 AA4 2 TYR B 113 SER B 115 0 SHEET 2 AA4 2 ARG B 158 SER B 160 -1 O LEU B 159 N ILE B 114 LINK OD1 ASP A 71 CA CA A 301 1555 1555 2.27 LINK OD2 ASP A 73 CA CA A 301 1555 1555 2.24 LINK OD1 ASP A 75 CA CA A 301 1555 1555 2.42 LINK O TYR A 77 CA CA A 301 1555 1555 2.28 LINK OE1 GLU A 82 CA CA A 301 1555 1555 2.37 LINK OE2 GLU A 82 CA CA A 301 1555 1555 2.67 LINK OD1 ASP A 107 CA CA A 302 1555 1555 2.31 LINK OD1 ASN A 109 CA CA A 302 1555 1555 2.42 LINK OD1 ASP A 111 CA CA A 302 1555 1555 2.34 LINK O TYR A 113 CA CA A 302 1555 1555 2.34 LINK OE1 GLU A 118 CA CA A 302 1555 1555 2.41 LINK OE2 GLU A 118 CA CA A 302 1555 1555 2.39 LINK OE2 GLU A 138 CA CA A 304 1555 1555 2.89 LINK OD1 ASP A 142 CA CA A 304 1555 1555 2.55 LINK OD2 ASP A 142 CA CA A 304 1555 1555 2.49 LINK OD1 ASP A 152 CA CA A 303 1555 1555 2.24 LINK OD1 ASP A 154 CA CA A 303 1555 1555 2.78 LINK OD1 ASP A 156 CA CA A 303 1555 1555 2.21 LINK O ARG A 158 CA CA A 303 1555 1555 2.47 LINK OD1 ASP A 163 CA CA A 303 1555 1555 2.43 LINK CA CA A 301 O HOH A 448 1555 1555 2.23 LINK CA CA A 302 O HOH A 474 1555 1555 2.25 LINK CA CA A 303 O HOH A 425 1555 1555 2.37 LINK CA CA A 303 O HOH A 436 1555 1555 2.23 LINK CA CA A 304 O HOH A 470 1555 1555 2.34 LINK CA CA A 304 O HOH A 480 1555 1555 2.38 LINK CA CA A 304 O ASP B 135 1555 1555 2.43 LINK CA CA A 304 O HOH B 511 1555 1555 2.54 LINK OD1 ASP B 71 CA CA B 301 1555 1555 2.31 LINK OD1 ASP B 73 CA CA B 301 1555 1555 2.37 LINK OD1 ASP B 75 CA CA B 301 1555 1555 2.38 LINK O TYR B 77 CA CA B 301 1555 1555 2.25 LINK OE1 GLU B 82 CA CA B 301 1555 1555 2.42 LINK OE2 GLU B 82 CA CA B 301 1555 1555 2.62 LINK OD1 ASP B 107 CA CA B 302 1555 1555 2.31 LINK OD1 ASN B 109 CA CA B 302 1555 1555 2.24 LINK OD1 ASP B 111 CA CA B 302 1555 1555 2.35 LINK O TYR B 113 CA CA B 302 1555 1555 2.16 LINK OE1 GLU B 118 CA CA B 302 1555 1555 2.40 LINK OE2 GLU B 118 CA CA B 302 1555 1555 2.47 LINK OD1 ASP B 152 CA CA B 303 1555 1555 2.16 LINK OD1 ASP B 154 CA CA B 303 1555 1555 2.53 LINK OD1 ASP B 156 CA CA B 303 1555 1555 2.24 LINK O ARG B 158 CA CA B 303 1555 1555 2.36 LINK OD1 ASP B 163 CA CA B 303 1555 1555 2.49 LINK CA CA B 301 O HOH B 507 1555 1555 2.18 LINK CA CA B 302 O HOH B 488 1555 1555 2.36 LINK CA CA B 303 O HOH B 404 1555 1555 2.42 LINK CA CA B 303 O HOH B 476 1555 1555 2.12 SITE 1 AC1 6 ASP A 71 ASP A 73 ASP A 75 TYR A 77 SITE 2 AC1 6 GLU A 82 HOH A 448 SITE 1 AC2 6 ASP A 107 ASN A 109 ASP A 111 TYR A 113 SITE 2 AC2 6 GLU A 118 HOH A 474 SITE 1 AC3 7 ASP A 152 ASP A 154 ASP A 156 ARG A 158 SITE 2 AC3 7 ASP A 163 HOH A 425 HOH A 436 SITE 1 AC4 6 GLU A 138 ASP A 142 HOH A 470 HOH A 480 SITE 2 AC4 6 ASP B 135 HOH B 511 SITE 1 AC5 6 ASP B 71 ASP B 73 ASP B 75 TYR B 77 SITE 2 AC5 6 GLU B 82 HOH B 507 SITE 1 AC6 6 ASP B 107 ASN B 109 ASP B 111 TYR B 113 SITE 2 AC6 6 GLU B 118 HOH B 488 SITE 1 AC7 7 ASP B 152 ASP B 154 ASP B 156 ARG B 158 SITE 2 AC7 7 ASP B 163 HOH B 404 HOH B 476 SITE 1 AC8 4 LEU B 40 LYS B 41 ASP B 43 HOH B 489 CRYST1 65.540 65.540 113.540 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008807 0.00000